Wall clock time and date at job start Tue Mar 31 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29932 * 125.38187 * 2 1 4 4 C 1.36071 * 108.47914 * 180.16694 * 3 2 1 5 5 C 1.47413 * 126.44710 * 179.83040 * 4 3 2 6 6 O 1.21619 * 119.99612 * 185.52701 * 5 4 3 7 7 N 1.34771 * 120.00520 * 5.52262 * 5 4 3 8 8 C 1.48213 * 119.97564 * 175.35318 * 7 5 4 9 9 C 1.47142 * 110.34230 * 102.46484 * 8 7 5 10 10 C 1.53793 * 111.83775 * 58.30411 * 9 8 7 11 11 N 1.43466 * 107.96068 * 281.66251 * 10 9 8 12 12 C 1.36931 * 118.93768 * 273.61493 * 11 10 9 13 13 H 1.07998 * 120.00822 * 23.63813 * 12 11 10 14 14 C 1.38813 * 119.99811 * 203.64393 * 12 11 10 15 15 N 1.31620 * 120.00104 * 35.43065 * 14 12 11 16 16 Si 1.86799 * 120.00026 * 215.43619 * 14 12 11 17 17 H 1.48503 * 109.46946 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47232 * 59.99632 * 16 14 12 19 19 H 1.48501 * 109.47092 * 299.99416 * 16 14 12 20 20 C 1.48856 * 122.11928 * 93.89157 * 11 10 9 21 21 C 1.43623 * 119.96807 * 355.33031 * 7 5 4 22 22 C 1.36091 * 107.10271 * 359.56516 * 4 3 2 23 23 O 1.34055 * 125.37541 * 179.68490 * 2 1 3 24 24 H 1.08999 * 109.47112 * 180.29624 * 1 2 3 25 25 H 1.08999 * 109.46908 * 300.29491 * 1 2 3 26 26 H 1.09002 * 109.47169 * 60.29305 * 1 2 3 27 27 H 1.08998 * 109.32169 * 342.20675 * 8 7 5 28 28 H 1.08999 * 109.18697 * 222.65056 * 8 7 5 29 29 H 1.08996 * 109.01102 * 297.69477 * 9 8 7 30 30 H 1.09008 * 109.00555 * 178.90835 * 9 8 7 31 31 H 1.09003 * 109.76642 * 162.04563 * 10 9 8 32 32 H 1.09001 * 109.80669 * 41.30501 * 10 9 8 33 33 H 0.97001 * 120.00108 * 0.84348 * 15 14 12 34 34 H 1.08994 * 109.48376 * 80.34543 * 20 11 10 35 35 H 1.08994 * 109.47703 * 200.38321 * 20 11 10 36 36 H 1.08997 * 108.87157 * 31.46937 * 21 7 5 37 37 H 1.09002 * 108.87687 * 149.90296 * 21 7 5 38 38 H 1.07990 * 126.52851 * 180.28452 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6637 -0.0038 5 6 4.7439 1.5437 -0.0086 6 8 5.8572 1.0654 -0.1131 7 7 4.5916 2.8781 0.1027 8 6 5.7832 3.7538 0.2015 9 6 6.0443 4.4099 -1.0894 10 6 4.8420 5.2455 -1.5600 11 7 3.8671 4.3476 -2.1092 12 6 3.9645 3.9893 -3.4272 13 1 4.9171 4.0448 -3.9330 14 6 2.8388 3.5548 -4.1134 15 7 1.6627 4.0840 -3.8504 16 14 2.9929 2.2189 -5.4099 17 1 1.6560 1.9374 -5.9920 18 1 3.5320 0.9837 -4.7863 19 1 3.9134 2.6741 -6.4827 20 6 2.7496 3.7977 -1.2939 21 6 3.2745 3.4504 0.1249 22 6 3.5660 -0.6971 0.0038 23 8 2.2831 -1.0930 0.0060 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3633 0.5184 0.8873 26 1 -0.3633 0.5093 -0.8926 27 1 6.6490 3.1544 0.4829 28 1 5.6074 4.5134 0.9632 29 1 6.2615 3.6476 -1.8376 30 1 6.9117 5.0622 -0.9871 31 1 5.1619 5.9542 -2.3239 32 1 4.4127 5.7836 -0.7148 33 1 1.5845 4.7862 -3.1858 34 1 1.9546 4.5396 -1.2194 35 1 2.3624 2.8963 -1.7690 36 1 2.5899 2.7416 0.5908 37 1 3.2960 4.3617 0.7227 38 1 4.4360 -1.3369 0.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981034171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:59 Heat of formation + Delta-G solvation = 7.008666 kcal Electronic energy + Delta-G solvation = -23300.238238 eV Core-core repulsion = 19952.071993 eV Total energy + Delta-G solvation = -3348.166245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.45254 -41.12623 -38.73918 -36.31714 -35.95649 -34.27129 -33.09628 -32.64642 -29.41829 -28.68583 -27.25218 -25.47558 -25.36000 -23.22055 -22.40222 -21.50009 -20.44470 -19.37257 -18.47638 -17.96228 -17.66929 -17.42680 -16.46221 -16.19216 -15.93376 -15.59686 -15.14873 -15.02744 -14.71911 -14.51007 -14.34924 -13.91263 -13.90832 -13.72729 -13.26569 -13.03458 -12.90463 -12.60405 -12.39719 -12.10898 -12.01417 -11.90593 -11.86861 -11.50303 -11.39544 -10.95688 -10.26604 -10.07480 -9.59745 -8.86056 -8.35628 -5.27817 0.07241 0.97899 1.46190 1.52403 1.60266 1.72127 1.95163 2.25030 2.57514 2.90021 3.12675 3.53050 3.69438 3.81099 4.00449 4.13774 4.21906 4.39910 4.41162 4.47974 4.54162 4.62665 4.64489 4.68135 4.76554 4.77073 4.94425 5.04990 5.08412 5.13996 5.26529 5.35252 5.44132 5.70469 5.89212 6.30689 6.40344 6.54312 7.03417 7.13392 7.85704 8.24490 8.94466 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.009502 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.048765 B = 2945.906871 C = 4024.111436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.197 3.803 3 N -0.479 5.479 4 C -0.097 4.097 5 C 0.593 3.407 6 O -0.579 6.579 7 N -0.571 5.571 8 C 0.126 3.874 9 C -0.153 4.153 10 C 0.159 3.841 11 N -0.610 5.610 12 C -0.369 4.369 13 H 0.032 0.968 14 C -0.057 4.057 15 N -0.918 5.918 16 Si 1.090 2.910 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.277 1.277 20 C 0.160 3.840 21 C 0.085 3.915 22 C 0.019 3.981 23 O -0.193 6.193 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.256 0.744 34 H 0.014 0.986 35 H 0.039 0.961 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -7.093 12.800 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.011 4.011 3 N -0.210 5.210 4 C -0.216 4.216 5 C 0.381 3.619 6 O -0.461 6.461 7 N -0.299 5.299 8 C 0.005 3.995 9 C -0.194 4.194 10 C 0.032 3.968 11 N -0.334 5.334 12 C -0.498 4.498 13 H 0.050 0.950 14 C -0.256 4.256 15 N -0.558 5.558 16 Si 0.917 3.083 17 H -0.207 1.207 18 H -0.227 1.227 19 H -0.203 1.203 20 C 0.034 3.966 21 C -0.040 4.040 22 C -0.055 4.055 23 O -0.080 6.080 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.142 0.858 37 H 0.095 0.905 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.731 -7.571 11.672 14.020 hybrid contribution 1.403 0.578 0.443 1.581 sum -0.328 -6.993 12.116 13.993 Atomic orbital electron populations 1.20591 0.77782 1.06826 1.06156 1.27457 0.98215 0.77839 0.97629 1.70793 1.00805 1.30020 1.19349 1.21764 0.92152 0.93937 1.13707 1.17164 0.86408 0.82466 0.75814 1.90706 1.25920 1.75975 1.53532 1.47319 1.08432 1.05040 1.69121 1.20801 0.87440 0.93270 0.97961 1.21638 1.00558 0.99943 0.97254 1.20427 0.89234 0.90853 0.96322 1.43992 1.30613 1.51811 1.06953 1.19895 0.94597 1.45857 0.89498 0.94972 1.26573 0.92648 1.03235 1.03159 1.70924 1.26930 1.25848 1.32145 0.83159 0.75764 0.74899 0.74511 1.20659 1.22710 1.20335 1.21824 0.88657 0.95644 0.90492 1.22371 0.84019 1.00252 0.97387 1.25618 0.85679 0.94930 0.99267 1.84400 1.16376 1.37878 1.69319 0.86487 0.86284 0.88577 0.90150 0.88124 0.95658 0.89110 0.94946 0.92568 0.93380 0.96865 0.94201 0.85792 0.90486 0.72953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.20 5.41 8.30 88.39 0.73 6.15 16 3 N -0.48 -16.63 7.04 -293.04 -2.06 -18.69 16 4 C -0.10 -3.55 6.66 40.40 0.27 -3.28 16 5 C 0.59 24.38 7.66 86.66 0.66 25.05 16 6 O -0.58 -25.72 16.36 -4.09 -0.07 -25.79 16 7 N -0.57 -22.02 2.46 -834.39 -2.05 -24.08 16 8 C 0.13 4.22 5.67 84.23 0.48 4.70 16 9 C -0.15 -5.74 5.64 29.04 0.16 -5.58 16 10 C 0.16 6.72 5.63 87.21 0.49 7.21 16 11 N -0.61 -31.27 2.41 -697.40 -1.68 -32.95 16 12 C -0.37 -21.71 9.06 84.03 0.76 -20.94 16 13 H 0.03 1.99 8.03 -2.91 -0.02 1.96 16 14 C -0.06 -3.34 4.34 84.86 0.37 -2.97 16 15 N -0.92 -55.95 12.80 21.65 0.28 -55.67 16 16 Si 1.09 54.20 30.04 68.60 2.06 56.26 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 C 0.16 7.57 5.07 86.69 0.44 8.01 16 21 C 0.08 3.19 4.84 87.67 0.42 3.61 16 22 C 0.02 0.55 11.95 67.32 0.80 1.36 16 23 O -0.19 -5.14 10.73 0.25 0.00 -5.14 16 24 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.69 7.18 -2.39 -0.02 2.67 16 28 H 0.10 2.64 8.05 -2.39 -0.02 2.62 16 29 H 0.02 1.16 7.91 -2.39 -0.02 1.14 16 30 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.03 1.43 8.02 -2.39 -0.02 1.41 16 32 H 0.06 2.08 7.59 -2.39 -0.02 2.06 16 33 H 0.26 15.83 6.84 -92.71 -0.63 15.20 16 34 H 0.01 0.66 7.35 -2.39 -0.02 0.65 16 35 H 0.04 2.16 6.29 -2.39 -0.02 2.14 16 36 H 0.12 4.49 4.74 -2.46 -0.01 4.48 16 37 H 0.08 2.49 7.73 -2.39 -0.02 2.47 16 38 H 0.25 5.56 8.06 -2.92 -0.02 5.54 16 Total: -1.00 -76.81 308.83 4.03 -72.78 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.21 Total: 10.18 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.35 Total: 23.10 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.52 Total: -131.39 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.06 Total: -30.93 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 2.06 Total: 56.26 kcal Total: -76.81 4.03 -72.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981034171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.792 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds