Wall clock time and date at job start Tue Mar 31 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30017 * 127.34089 * 2 1 4 4 O 1.20651 * 112.30370 * 180.30557 * 3 2 1 5 5 C 1.33499 * 113.15759 * 359.71543 * 4 3 2 6 6 C 1.37357 * 106.33901 * 359.97438 * 5 4 3 7 7 C 1.47405 * 128.56047 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99629 * 197.10122 * 7 6 5 9 9 N 1.34776 * 120.00161 * 17.09559 * 7 6 5 10 10 C 1.48212 * 119.96840 * 174.62593 * 9 7 6 11 11 C 1.47135 * 110.34070 * 102.47310 * 10 9 7 12 12 C 1.53796 * 111.84183 * 58.29534 * 11 10 9 13 13 N 1.43458 * 107.96149 * 281.66773 * 12 11 10 14 14 C 1.36940 * 118.94094 * 273.61215 * 13 12 11 15 15 H 1.08009 * 119.99896 * 24.39843 * 14 13 12 16 16 C 1.38808 * 120.00142 * 204.41042 * 14 13 12 17 17 N 1.31620 * 120.00495 * 35.05770 * 16 14 13 18 18 Si 1.86811 * 119.99805 * 215.06525 * 16 14 13 19 19 H 1.48502 * 109.46954 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.46730 * 59.99319 * 18 16 14 21 21 H 1.48497 * 109.46750 * 299.99522 * 18 16 14 22 22 C 1.48851 * 122.12223 * 93.88552 * 13 12 11 23 23 C 1.43619 * 119.96781 * 354.61010 * 9 7 6 24 24 H 1.08996 * 109.46988 * 270.14259 * 1 2 3 25 25 H 1.09001 * 109.46748 * 30.14418 * 1 2 3 26 26 H 1.08999 * 109.47379 * 150.14133 * 1 2 3 27 27 H 1.08003 * 126.82770 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.32462 * 342.20866 * 10 9 7 29 29 H 1.08999 * 109.18224 * 222.64954 * 10 9 7 30 30 H 1.09005 * 109.00757 * 297.69045 * 11 10 9 31 31 H 1.09002 * 108.94462 * 178.86332 * 11 10 9 32 32 H 1.08998 * 109.76276 * 162.04943 * 12 11 10 33 33 H 1.09000 * 109.80375 * 41.31050 * 12 11 10 34 34 H 0.97005 * 119.99657 * 5.42044 * 17 16 14 35 35 H 1.09001 * 109.48127 * 80.34993 * 22 13 12 36 36 H 1.09001 * 109.48613 * 200.38077 * 22 13 12 37 37 H 1.08998 * 108.87769 * 31.46107 * 23 9 7 38 38 H 1.08998 * 108.87193 * 150.00262 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0060 5 6 3.6494 -0.6009 -0.0049 6 6 2.3991 -1.1697 0.0035 7 6 2.0400 -2.5993 0.0074 8 8 0.9136 -2.9441 -0.2950 9 7 2.9599 -3.5243 0.3460 10 6 2.5683 -4.9487 0.4657 11 6 3.0026 -5.7001 -0.7225 12 6 4.5237 -5.6108 -0.9315 13 7 4.8154 -4.3348 -1.5185 14 6 4.7545 -4.2021 -2.8801 15 1 4.1386 -4.8727 -3.4610 16 6 5.4846 -3.2060 -3.5137 17 7 6.6680 -2.8621 -3.0515 18 14 4.7873 -2.3533 -5.0225 19 1 5.7543 -1.3357 -5.5071 20 1 3.5068 -1.6898 -4.6686 21 1 4.5464 -3.3562 -6.0908 22 6 5.1881 -3.1517 -0.6956 23 6 4.3188 -3.1288 0.5901 24 1 -0.3633 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5116 27 1 4.5967 -1.1197 -0.0097 28 1 1.4846 -5.0181 0.5601 29 1 3.0358 -5.3753 1.3530 30 1 2.4993 -5.2967 -1.6012 31 1 2.7216 -6.7463 -0.6018 32 1 4.8512 -6.4074 -1.5996 33 1 5.0341 -5.7009 0.0273 34 1 7.0644 -3.3569 -2.3173 35 1 6.2420 -3.2147 -0.4246 36 1 5.0138 -2.2409 -1.2684 37 1 4.3238 -2.1194 1.0015 38 1 4.7582 -3.8087 1.3200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981862178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:40 Heat of formation + Delta-G solvation = 54.764217 kcal Electronic energy + Delta-G solvation = -23356.237685 eV Core-core repulsion = 20010.142276 eV Total energy + Delta-G solvation = -3346.095409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.00864 -41.30667 -38.76591 -36.24235 -35.68517 -34.91379 -33.12696 -32.33793 -29.87659 -29.45545 -27.28132 -25.66803 -25.50601 -23.41447 -22.41815 -21.55231 -20.66324 -19.33755 -18.83357 -18.52995 -17.97163 -17.47264 -16.60173 -16.12632 -16.07068 -15.65817 -15.35236 -14.92616 -14.55819 -14.37613 -14.27376 -14.09353 -13.94905 -13.74057 -13.33682 -12.97511 -12.74104 -12.56148 -12.35626 -12.13627 -12.08654 -11.97452 -11.82707 -11.41641 -11.17082 -11.00666 -10.76726 -10.31705 -9.71596 -8.89772 -8.28904 -5.30099 -0.02169 0.66420 1.50083 1.55460 1.68170 1.74277 2.00144 2.22175 2.58809 2.94915 3.07238 3.23371 3.48585 3.57658 3.80743 3.99179 4.07415 4.09224 4.28331 4.35367 4.43841 4.51572 4.52520 4.58336 4.67743 4.71935 4.80988 4.94060 4.95847 5.10093 5.13224 5.18679 5.41741 5.64205 5.90977 6.30788 6.42442 7.00795 7.09162 7.11194 7.82426 8.18904 8.95933 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.008798 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.097944 B = 3181.646569 C = 4116.854378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.059 3.941 3 N -0.375 5.375 4 O 0.091 5.909 5 C 0.000 4.000 6 C -0.273 4.273 7 C 0.593 3.407 8 O -0.571 6.571 9 N -0.577 5.577 10 C 0.131 3.869 11 C -0.156 4.156 12 C 0.159 3.841 13 N -0.603 5.603 14 C -0.361 4.361 15 H 0.032 0.968 16 C -0.049 4.049 17 N -0.916 5.916 18 Si 1.075 2.925 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.281 1.281 22 C 0.129 3.871 23 C 0.070 3.930 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.255 0.745 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.261 0.739 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.103 0.897 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 0.626 12.151 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 N -0.084 5.084 4 O 0.034 5.966 5 C -0.081 4.081 6 C -0.280 4.280 7 C 0.383 3.617 8 O -0.452 6.452 9 N -0.306 5.306 10 C 0.010 3.990 11 C -0.196 4.196 12 C 0.032 3.968 13 N -0.326 5.326 14 C -0.491 4.491 15 H 0.049 0.951 16 C -0.250 4.250 17 N -0.556 5.556 18 Si 0.903 3.097 19 H -0.210 1.210 20 H -0.228 1.228 21 H -0.207 1.207 22 C 0.003 3.997 23 C -0.055 4.055 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.270 0.730 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.089 2.919 10.918 12.837 hybrid contribution -0.126 -2.191 0.320 2.218 sum -6.216 0.727 11.238 12.863 Atomic orbital electron populations 1.20330 0.83384 1.04550 1.04843 1.25272 1.00045 0.86098 0.98960 1.73600 0.89656 1.24008 1.21162 1.84558 1.21267 1.23631 1.67132 1.27878 1.01375 0.83200 0.95632 1.22389 0.93676 0.95597 1.16357 1.17062 0.84599 0.83828 0.76257 1.90690 1.22473 1.81923 1.50143 1.47285 1.08586 1.07984 1.66770 1.20778 1.01179 0.78116 0.98893 1.21658 0.99685 1.00364 0.97926 1.20459 0.92783 0.86706 0.96850 1.43796 1.81195 1.05533 1.02119 1.19859 1.24727 1.19848 0.84668 0.95052 1.26276 0.93796 1.00429 1.04478 1.70935 1.11917 1.45470 1.27305 0.83362 0.74960 0.76525 0.74854 1.21020 1.22766 1.20736 1.22290 0.96031 0.90257 0.91144 1.22534 0.81553 1.03382 0.98059 0.87999 0.88911 0.89941 0.72973 0.90450 0.87469 0.95732 0.89345 0.94980 0.91654 0.92949 0.94079 0.93818 0.87975 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 10.29 71.24 0.73 -1.18 16 2 C 0.06 1.91 7.58 45.16 0.34 2.25 16 3 N -0.37 -12.22 12.01 -44.78 -0.54 -12.76 16 4 O 0.09 2.85 11.06 76.94 0.85 3.70 16 5 C 0.00 0.01 9.58 67.61 0.65 0.66 16 6 C -0.27 -9.32 6.19 -18.74 -0.12 -9.43 16 7 C 0.59 21.94 7.66 86.66 0.66 22.60 16 8 O -0.57 -23.96 15.22 -4.08 -0.06 -24.02 16 9 N -0.58 -18.42 2.46 -834.43 -2.05 -20.48 16 10 C 0.13 3.69 5.67 84.23 0.48 4.17 16 11 C -0.16 -5.10 5.64 29.04 0.16 -4.94 16 12 C 0.16 5.78 5.63 87.21 0.49 6.27 16 13 N -0.60 -26.82 2.41 -697.41 -1.68 -28.50 16 14 C -0.36 -19.41 9.04 84.03 0.76 -18.66 16 15 H 0.03 1.81 8.03 -2.91 -0.02 1.79 16 16 C -0.05 -2.70 4.35 84.86 0.37 -2.33 16 17 N -0.92 -51.24 12.70 21.65 0.28 -50.96 16 18 Si 1.07 51.56 30.04 68.60 2.06 53.62 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 C 0.13 4.89 4.52 86.69 0.39 5.28 16 23 C 0.07 1.93 4.74 87.67 0.42 2.34 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 27 H 0.26 6.88 3.63 -2.91 -0.01 6.87 16 28 H 0.08 2.28 7.19 -2.39 -0.02 2.27 16 29 H 0.11 2.18 8.05 -2.39 -0.02 2.16 16 30 H 0.02 1.03 7.91 -2.38 -0.02 1.01 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.03 1.26 8.02 -2.39 -0.02 1.24 16 33 H 0.07 1.96 7.59 -2.39 -0.02 1.94 16 34 H 0.26 14.49 7.10 -92.70 -0.66 13.84 16 35 H 0.04 1.57 7.43 -2.39 -0.02 1.55 16 36 H 0.04 1.90 5.19 -2.39 -0.01 1.89 16 37 H 0.10 2.38 4.26 -2.39 -0.01 2.37 16 38 H 0.11 2.34 7.72 -2.39 -0.02 2.32 16 Total: -1.00 -68.51 301.65 5.40 -63.11 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.20 Total: 9.25 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.34 Total: 7.04 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.99 Total: -112.70 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.79 Total: -20.32 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.06 Total: 53.62 kcal Total: -68.51 5.40 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981862178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.876 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds