Wall clock time and date at job start Tue Mar 31 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41260 * 128.07649 * 2 1 4 4 N 1.30133 * 106.59019 * 180.02562 * 3 2 1 5 5 O 1.20890 * 111.97997 * 359.69954 * 4 3 2 6 6 C 1.34646 * 111.46559 * 0.49374 * 5 4 3 7 7 C 1.47513 * 126.94076 * 179.78544 * 6 5 4 8 8 O 1.21584 * 120.00157 * 185.76150 * 7 6 5 9 9 N 1.34779 * 120.00115 * 5.77148 * 7 6 5 10 10 C 1.48210 * 119.97068 * 176.29509 * 9 7 6 11 11 C 1.47202 * 110.35516 * 102.78352 * 10 9 7 12 12 C 1.53799 * 111.83465 * 58.26567 * 11 10 9 13 13 N 1.43462 * 107.95647 * 281.68951 * 12 11 10 14 14 C 1.36937 * 118.94275 * 273.63258 * 13 12 11 15 15 H 1.08001 * 119.99859 * 20.12204 * 14 13 12 16 16 C 1.38809 * 120.00117 * 200.12484 * 14 13 12 17 17 N 1.31626 * 119.99925 * 20.42834 * 16 14 13 18 18 Si 1.86798 * 120.00063 * 200.42991 * 16 14 13 19 19 H 1.48499 * 109.47103 * 60.00117 * 18 16 14 20 20 H 1.48500 * 109.47357 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47080 * 300.00037 * 18 16 14 22 22 C 1.48864 * 122.11719 * 93.66009 * 13 12 11 23 23 C 1.43627 * 119.96569 * 356.56506 * 9 7 6 24 24 H 1.08998 * 109.46611 * 269.97099 * 1 2 3 25 25 H 1.09004 * 109.46813 * 29.96451 * 1 2 3 26 26 H 1.08991 * 109.47115 * 149.97121 * 1 2 3 27 27 H 1.07998 * 126.70635 * 0.04762 * 3 2 1 28 28 H 1.08997 * 109.32418 * 223.03022 * 10 9 7 29 29 H 1.09003 * 109.32657 * 342.50008 * 10 9 7 30 30 H 1.09000 * 108.98873 * 297.67380 * 11 10 9 31 31 H 1.09000 * 109.03261 * 178.88299 * 11 10 9 32 32 H 1.08999 * 109.75917 * 162.07676 * 12 11 10 33 33 H 1.08999 * 109.80857 * 41.33163 * 12 11 10 34 34 H 0.97002 * 119.99780 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47701 * 200.61339 * 22 13 12 36 36 H 1.08996 * 109.48982 * 80.58355 * 22 13 12 37 37 H 1.08993 * 108.87511 * 31.17620 * 23 9 7 38 38 H 1.09000 * 108.86662 * 149.61236 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 -0.0006 5 8 3.5995 -0.5735 0.0050 6 6 2.3508 -1.0771 -0.0007 7 6 1.9695 -2.5021 -0.0010 8 8 0.8009 -2.8187 -0.1122 9 7 2.9165 -3.4531 0.1220 10 6 2.5261 -4.8805 0.2042 11 6 2.7612 -5.5507 -1.0852 12 6 4.2332 -5.4539 -1.5202 13 7 4.4502 -4.1416 -2.0575 14 6 4.1822 -3.9147 -3.3811 15 1 3.5273 -4.5822 -3.9215 16 6 4.7522 -2.8270 -4.0282 17 7 5.8298 -2.2567 -3.5320 18 14 3.9902 -2.1727 -5.6032 19 1 2.5951 -1.7401 -5.3355 20 1 4.7816 -1.0153 -6.0923 21 1 3.9878 -3.2422 -6.6334 22 6 4.9581 -3.0186 -1.2226 23 6 4.3028 -3.0819 0.1792 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 2.0947 2.1541 0.0007 28 1 3.1156 -5.3717 0.9783 29 1 1.4689 -4.9512 0.4602 30 1 2.1348 -5.0852 -1.8462 31 1 2.4860 -6.6015 -0.9949 32 1 4.4420 -6.2038 -2.2832 33 1 4.8837 -5.6123 -0.6600 34 1 6.2279 -1.4964 -3.9840 35 1 4.7081 -2.0702 -1.6982 36 1 6.0403 -3.1007 -1.1220 37 1 4.3867 -2.1035 0.6522 38 1 4.8384 -3.8119 0.7862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983531389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:02 Heat of formation + Delta-G solvation = 69.436931 kcal Electronic energy + Delta-G solvation = -23465.562856 eV Core-core repulsion = 20120.103704 eV Total energy + Delta-G solvation = -3345.459152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.73921 -39.72898 -37.15956 -34.73919 -34.11836 -33.08278 -31.71195 -30.81332 -28.40667 -27.50908 -25.62067 -23.81186 -23.64157 -22.53373 -21.15400 -19.76470 -19.53662 -17.61259 -17.30240 -16.49317 -16.10472 -15.73557 -15.09618 -14.57267 -14.23418 -13.79720 -13.66499 -13.33572 -13.13124 -13.10647 -13.00613 -12.55953 -12.41802 -12.24495 -11.72795 -11.37410 -11.06466 -10.97043 -10.74219 -10.55778 -10.28543 -10.24180 -10.10996 -9.85161 -9.75559 -9.69833 -9.21581 -8.41586 -8.17424 -6.76185 -5.78282 -3.13495 1.10654 2.29718 2.87769 3.37288 3.39527 3.45971 3.48664 3.52617 4.36507 4.52927 4.69714 4.88974 5.21511 5.28353 5.31833 5.47678 5.52492 5.62398 5.68056 5.73536 5.82307 5.88119 5.98473 6.11174 6.12524 6.32132 6.35121 6.41764 6.48249 6.78392 6.80915 7.03674 7.35705 7.49807 7.75142 7.83497 8.22282 8.42823 8.43564 9.21037 9.90751 10.33671 11.29967 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.009057 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.594261 B = 3090.779689 C = 3982.848710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.135 4.135 3 C -0.021 4.021 4 N -0.347 5.347 5 O 0.130 5.870 6 C -0.074 4.074 7 C 0.606 3.394 8 O -0.529 6.529 9 N -0.568 5.568 10 C 0.132 3.868 11 C -0.172 4.172 12 C 0.161 3.839 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.892 3.108 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.165 3.835 23 C 0.069 3.931 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.193 0.807 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 1.197 10.492 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C -0.199 4.199 4 N -0.047 5.047 5 O 0.058 5.942 6 C -0.139 4.139 7 C 0.391 3.609 8 O -0.407 6.407 9 N -0.297 5.297 10 C 0.011 3.989 11 C -0.213 4.213 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.722 3.278 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.039 3.961 23 C -0.056 4.056 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.210 0.790 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.780 1.713 10.378 12.002 hybrid contribution -0.960 0.493 -1.049 1.505 sum -6.739 2.205 9.329 11.718 Atomic orbital electron populations 1.20269 0.86757 1.04072 1.02814 1.21550 0.98799 0.90455 1.03234 1.24886 0.88012 1.01734 1.05268 1.73745 1.23042 0.92273 1.15641 1.85227 1.27846 1.14833 1.66324 1.24050 0.84540 0.96362 1.08990 1.16559 0.85391 0.81588 0.77315 1.90752 1.17794 1.80555 1.51645 1.47319 1.06616 1.06528 1.69267 1.20669 1.00975 0.78897 0.98361 1.21907 1.02920 0.98787 0.97722 1.20285 0.91636 0.88365 0.96449 1.43729 1.76659 1.04066 1.06934 1.19129 1.22222 1.10674 0.86437 0.91551 1.24821 0.96050 1.00656 0.97894 1.70049 1.18668 1.24788 1.41142 0.86511 0.79037 0.78635 0.83595 1.21238 1.21635 1.20873 1.21950 0.95228 0.93200 0.85690 1.22540 0.80786 1.00365 1.01936 0.90733 0.91114 0.89131 0.78964 0.91501 0.90163 0.91088 0.92283 0.93513 0.94697 0.93606 0.89824 0.93894 0.90351 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.02 36.01 0.36 -0.69 16 2 C -0.14 -2.14 6.36 -103.99 -0.66 -2.80 16 3 C -0.02 -0.32 12.14 -17.12 -0.21 -0.52 16 4 N -0.35 -6.18 12.04 30.46 0.37 -5.81 16 5 O 0.13 2.43 7.19 15.54 0.11 2.55 16 6 C -0.07 -1.35 6.88 -36.32 -0.25 -1.60 16 7 C 0.61 11.64 7.67 -12.48 -0.10 11.55 16 8 O -0.53 -10.74 14.54 5.29 0.08 -10.66 16 9 N -0.57 -10.25 2.46 -177.87 -0.44 -10.69 16 10 C 0.13 2.08 5.68 -5.89 -0.03 2.05 16 11 C -0.17 -2.98 5.64 -29.10 -0.16 -3.14 16 12 C 0.16 3.17 5.63 -5.23 -0.03 3.14 16 13 N -0.59 -14.21 2.55 -171.99 -0.44 -14.64 16 14 C -0.26 -6.94 9.29 -15.06 -0.14 -7.08 16 15 H 0.07 1.81 7.91 -52.49 -0.42 1.39 16 16 C 0.00 0.11 4.83 -17.43 -0.08 0.03 16 17 N -0.90 -25.92 10.95 55.49 0.61 -25.31 16 18 Si 0.89 22.31 29.60 -169.99 -5.03 17.28 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 C 0.17 3.77 5.12 -1.75 -0.01 3.76 16 23 C 0.07 1.24 4.84 -4.58 -0.02 1.22 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.35 6.63 -51.93 -0.34 1.00 16 27 H 0.19 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.08 1.25 7.16 -51.93 -0.37 0.87 16 30 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 33 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.08 2.19 5.64 -51.93 -0.29 1.90 16 36 H 0.04 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.08 1.35 4.94 -51.93 -0.26 1.10 16 38 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -31.22 305.20 -6.45 -37.66 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.97 Total: -0.88 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.34 Total: 5.91 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.10 Total: -56.46 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.19 Total: -8.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.22 -6.45 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983531389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.101 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds