Wall clock time and date at job start Tue Mar 31 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33700 * 126.27134 * 2 1 4 4 C 1.30615 * 108.99402 * 180.02562 * 3 2 1 5 5 O 1.33660 * 109.15462 * 359.72703 * 4 3 2 6 6 C 1.35341 * 107.68668 * 0.43245 * 5 4 3 7 7 C 1.46727 * 126.64520 * 179.83718 * 6 5 4 8 8 O 1.21683 * 120.00042 * 179.69061 * 7 6 5 9 9 N 1.34777 * 119.99891 * 359.41888 * 7 6 5 10 10 C 1.47424 * 125.64883 * 0.29521 * 9 7 6 11 11 C 1.54909 * 104.83605 * 204.09674 * 10 9 7 12 12 C 1.55162 * 101.57842 * 322.99026 * 11 10 9 13 13 H 1.08991 * 110.72054 * 276.96498 * 12 11 10 14 14 N 1.46498 * 110.72063 * 153.86575 * 12 11 10 15 15 C 1.36932 * 119.99900 * 86.45245 * 14 12 11 16 16 H 1.07995 * 120.00487 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99674 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47048 * 59.99588 * 19 17 15 21 21 H 1.48495 * 109.47147 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47044 * 300.00002 * 19 17 15 23 23 C 1.47020 * 125.64990 * 179.97438 * 9 7 6 24 24 H 1.08995 * 109.88562 * 59.55450 * 23 9 7 25 25 C 1.53005 * 109.87499 * 298.38807 * 23 9 7 26 26 H 1.09006 * 109.47469 * 269.97304 * 1 2 3 27 27 H 1.08991 * 109.47932 * 29.98102 * 1 2 3 28 28 H 1.09004 * 109.46709 * 149.98259 * 1 2 3 29 29 H 1.08001 * 125.41677 * 179.97438 * 4 3 2 30 30 H 1.09010 * 110.36972 * 322.93201 * 10 9 7 31 31 H 1.09003 * 110.37102 * 85.25505 * 10 9 7 32 32 H 1.08996 * 111.00687 * 81.06266 * 11 10 9 33 33 H 1.08998 * 111.00753 * 204.91535 * 11 10 9 34 34 H 0.97006 * 119.99733 * 266.45346 * 14 12 11 35 35 H 0.97001 * 119.99938 * 180.02562 * 18 17 15 36 36 H 1.09005 * 109.46949 * 61.45988 * 25 23 9 37 37 H 1.09002 * 109.46447 * 181.45150 * 25 23 9 38 38 H 1.08995 * 109.47253 * 301.45153 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0006 5 8 3.5889 -0.6459 0.0051 6 6 2.3137 -1.0991 -0.0004 7 6 1.8827 -2.5017 -0.0006 8 8 0.6967 -2.7737 -0.0003 9 7 2.8005 -3.4886 -0.0067 10 6 4.2629 -3.3020 -0.0073 11 6 4.8287 -4.6046 -0.6260 12 6 3.8625 -5.6706 -0.0450 13 1 4.1692 -5.9624 0.9594 14 7 3.7923 -6.8405 -0.9239 15 6 4.7071 -7.8510 -0.7932 16 1 5.4806 -7.7854 -0.0424 17 6 4.6408 -8.9593 -1.6264 18 7 3.6990 -9.0386 -2.5425 19 14 5.8882 -10.3382 -1.4476 20 1 5.8000 -10.9113 -0.0805 21 1 5.6014 -11.3979 -2.4476 22 1 7.2547 -9.8017 -1.6722 23 6 2.5092 -4.9297 -0.0071 24 1 1.9221 -5.1890 -0.8880 25 6 1.7422 -5.3056 1.2623 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8900 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 4.4042 1.3446 -0.0011 30 1 4.5354 -2.4420 -0.6192 31 1 4.6297 -3.1753 1.0113 32 1 4.7716 -4.5773 -1.7141 33 1 5.8517 -4.7824 -0.2945 34 1 3.0977 -6.8993 -1.5986 35 1 3.6525 -9.8132 -3.1245 36 1 0.7938 -4.7688 1.2862 37 1 1.5523 -6.3790 1.2675 38 1 2.3339 -5.0370 2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986109456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:19 Heat of formation + Delta-G solvation = 6.227896 kcal Electronic energy + Delta-G solvation = -22008.500225 eV Core-core repulsion = 18660.300124 eV Total energy + Delta-G solvation = -3348.200102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.60153 -39.94195 -37.60285 -35.49747 -34.15463 -32.10538 -31.43099 -30.92596 -29.37389 -27.72958 -25.28074 -24.24461 -23.19072 -22.48758 -21.57598 -20.26408 -19.51229 -17.46181 -17.26994 -17.08499 -16.71222 -16.00518 -15.20506 -14.85732 -14.60759 -14.05566 -13.69287 -13.48715 -13.36285 -13.20109 -12.94407 -12.85930 -12.30848 -12.24158 -11.94970 -11.67706 -11.30799 -11.21013 -11.11291 -10.97689 -10.85356 -10.62942 -10.32571 -10.16076 -9.95290 -9.75201 -9.15545 -8.98281 -8.51280 -7.08118 -5.85227 -3.16152 0.70488 2.25370 2.30810 3.05312 3.06917 3.39111 3.43986 3.45047 3.84091 4.46780 4.51486 4.57176 4.95866 5.08175 5.23292 5.30527 5.35301 5.43108 5.53471 5.57598 5.60826 5.69909 5.71188 5.82206 5.88288 6.00801 6.08681 6.15900 6.24396 6.37415 6.51514 6.54160 6.60355 6.86003 7.31853 7.54152 7.61698 8.04149 8.31801 9.43418 9.96922 10.31820 11.36799 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.003894 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.506411 B = 7188.948073 C = 7619.294214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.072 3.928 3 N -0.494 5.494 4 C 0.192 3.808 5 O -0.186 6.186 6 C -0.101 4.101 7 C 0.616 3.384 8 O -0.517 6.517 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.155 4.155 12 C 0.177 3.823 13 H 0.066 0.934 14 N -0.714 5.714 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.082 0.918 25 C -0.155 4.155 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.254 0.746 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 17.963 6.307 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.224 5.224 4 C -0.033 4.033 5 O -0.071 6.071 6 C -0.156 4.156 7 C 0.404 3.596 8 O -0.396 6.396 9 N -0.329 5.329 10 C -0.026 4.026 11 C -0.196 4.196 12 C 0.065 3.935 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.025 3.975 24 H 0.100 0.900 25 C -0.213 4.213 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.270 0.730 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.027 18.266 6.334 19.361 hybrid contribution 1.078 -1.184 -0.208 1.615 sum 0.051 17.082 6.127 18.148 Atomic orbital electron populations 1.20378 0.85348 1.04359 1.03642 1.22036 0.98376 0.86313 0.98452 1.70337 1.01372 1.31514 1.19168 1.28312 0.97576 0.79874 0.97521 1.84627 1.29657 1.24009 1.68833 1.23014 0.81278 0.96252 1.15102 1.15949 0.85031 0.80747 0.77920 1.90841 1.15295 1.81561 1.51883 1.48453 1.07157 1.06701 1.70542 1.22525 0.79109 0.99956 1.00981 1.23588 1.00712 0.93769 1.01538 1.21245 0.89831 0.87297 0.95130 0.91591 1.42329 1.36136 1.17623 1.39374 1.19150 1.06952 0.96799 1.14815 0.91006 1.24766 0.98763 0.98610 0.98352 1.69653 1.34540 1.30706 1.22790 0.86252 0.80764 0.81827 0.77205 1.21154 1.21650 1.21182 1.22003 0.98598 0.77586 0.99344 0.89959 1.22060 1.00403 1.02528 0.96335 0.90112 0.90611 0.88547 0.72993 0.90649 0.91485 0.90534 0.90340 0.77947 0.93267 0.91831 0.90796 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.87 36.00 0.36 -0.55 16 2 C 0.07 0.94 7.16 -82.47 -0.59 0.35 16 3 N -0.49 -5.91 11.26 -10.89 -0.12 -6.03 16 4 C 0.19 1.73 13.21 52.24 0.69 2.42 16 5 O -0.19 -2.14 8.07 4.44 0.04 -2.11 16 6 C -0.10 -1.41 6.96 -36.84 -0.26 -1.67 16 7 C 0.62 9.86 7.61 -12.83 -0.10 9.77 16 8 O -0.52 -9.19 13.84 5.20 0.07 -9.12 16 9 N -0.60 -9.38 3.06 -164.51 -0.50 -9.88 16 10 C 0.10 1.33 6.19 -2.53 -0.02 1.32 16 11 C -0.15 -2.51 6.77 -24.58 -0.17 -2.67 16 12 C 0.18 3.31 3.12 -66.09 -0.21 3.10 16 13 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 14 N -0.71 -16.98 5.25 -51.65 -0.27 -17.25 16 15 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 19 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.21 3.21 -66.94 -0.21 2.00 16 24 H 0.08 1.58 7.69 -51.93 -0.40 1.19 16 25 C -0.16 -2.50 9.11 37.16 0.34 -2.16 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.20 6.47 -51.93 -0.34 0.87 16 29 H 0.25 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.08 0.95 6.25 -51.92 -0.32 0.63 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.39 9.92 7.51 -40.82 -0.31 9.61 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 1.04 6.89 -51.93 -0.36 0.68 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -31.36 317.91 -5.77 -37.12 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.06 Total: 7.46 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.41 Total: 4.94 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.17 Total: -59.70 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.11 Total: -11.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.36 -5.77 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986109456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.352 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds