Wall clock time and date at job start Tue Mar 31 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29936 * 125.37835 * 2 1 4 4 C 1.36062 * 108.47856 * 180.16458 * 3 2 1 5 5 C 1.47423 * 126.44842 * 179.82254 * 4 3 2 6 6 O 1.21617 * 119.99554 * 179.68515 * 5 4 3 7 7 N 1.34770 * 120.00135 * 359.67851 * 5 4 3 8 8 C 1.47421 * 125.64855 * 0.05204 * 7 5 4 9 9 C 1.54906 * 104.83574 * 155.82992 * 8 7 5 10 10 C 1.55160 * 101.58189 * 37.00572 * 9 8 7 11 11 H 1.09007 * 110.71921 * 82.86065 * 10 9 8 12 12 N 1.46496 * 110.72388 * 206.13358 * 10 9 8 13 13 C 1.36931 * 120.00138 * 268.52508 * 12 10 9 14 14 H 1.07998 * 120.00260 * 359.97438 * 13 12 10 15 15 C 1.38818 * 120.00045 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00004 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47572 * 89.99722 * 17 15 13 19 19 H 1.48510 * 109.46821 * 209.99599 * 17 15 13 20 20 H 1.48497 * 109.47106 * 329.99011 * 17 15 13 21 21 C 1.47022 * 125.65017 * 179.97438 * 7 5 4 22 22 H 1.08999 * 109.88386 * 300.67318 * 21 7 5 23 23 C 1.53006 * 109.88102 * 61.68195 * 21 7 5 24 24 C 1.36096 * 107.10357 * 359.55322 * 4 3 2 25 25 O 1.34051 * 125.37787 * 179.66600 * 2 1 3 26 26 H 1.09000 * 109.46903 * 180.35501 * 1 2 3 27 27 H 1.09000 * 109.47376 * 300.35471 * 1 2 3 28 28 H 1.08994 * 109.47122 * 60.35779 * 1 2 3 29 29 H 1.08998 * 110.36424 * 274.66948 * 8 7 5 30 30 H 1.09006 * 110.37093 * 36.87674 * 8 7 5 31 31 H 1.09004 * 111.00880 * 155.07832 * 9 8 7 32 32 H 1.08996 * 111.00548 * 278.93822 * 9 8 7 33 33 H 0.97000 * 119.99470 * 88.51850 * 12 10 9 34 34 H 0.97001 * 120.00020 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.47002 * 58.54455 * 23 21 7 36 36 H 1.08993 * 109.46955 * 178.54893 * 23 21 7 37 37 H 1.09000 * 109.47050 * 298.54721 * 23 21 7 38 38 H 1.07997 * 126.52813 * 180.28429 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6639 -0.0037 5 6 4.7438 1.5439 -0.0087 6 8 5.8604 1.0619 -0.0059 7 7 4.5877 2.8826 -0.0165 8 6 3.2983 3.5972 -0.0197 9 6 3.6142 4.9880 0.5850 10 6 5.0225 5.2703 -0.0019 11 1 4.9456 5.6746 -1.0113 12 7 5.7732 6.1803 0.8666 13 6 5.7132 7.5322 0.6569 14 1 5.1127 7.9275 -0.1490 15 6 6.4249 8.3944 1.4797 16 7 7.1571 7.9126 2.4616 17 14 6.3425 10.2386 1.1940 18 1 5.2212 10.8118 1.9809 19 1 7.6193 10.8636 1.6240 20 1 6.1219 10.5065 -0.2498 21 6 5.6751 3.8720 -0.0216 22 1 6.3008 3.7399 0.8612 23 6 6.5201 3.7101 -1.2869 24 6 3.5660 -0.6970 0.0042 25 8 2.2831 -1.0930 0.0064 26 1 -0.3633 -1.0277 0.0064 27 1 -0.3634 0.5193 0.8868 28 1 -0.3633 0.5082 -0.8931 29 1 2.9255 3.7023 -1.0385 30 1 2.5707 3.0698 0.5973 31 1 2.8938 5.7334 0.2479 32 1 3.6466 4.9425 1.6735 33 1 6.3127 5.8252 1.5903 34 1 7.6542 8.5152 3.0367 35 1 5.8868 3.8358 -2.1651 36 1 7.3081 4.4631 -1.2963 37 1 6.9671 2.7161 -1.3005 38 1 4.4361 -1.3367 0.0082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986189284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:50 Heat of formation + Delta-G solvation = -16.230832 kcal Electronic energy + Delta-G solvation = -21795.112554 eV Core-core repulsion = 18445.938569 eV Total energy + Delta-G solvation = -3349.173985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.44903 -41.18795 -38.84328 -36.14742 -35.77065 -33.47633 -33.01659 -32.24494 -30.81912 -28.74051 -26.86102 -25.76955 -24.73592 -23.30004 -22.54895 -21.53257 -20.52057 -19.21254 -18.58069 -17.98803 -17.69851 -17.23221 -16.60324 -16.27213 -15.59149 -15.44553 -15.05035 -14.89112 -14.66657 -14.54570 -14.09644 -13.87190 -13.61354 -13.35824 -13.24287 -13.17447 -12.93044 -12.70222 -12.58995 -12.32052 -12.15600 -12.12760 -11.85222 -11.71750 -11.42868 -11.24630 -10.87969 -10.10537 -9.67432 -9.03441 -7.93690 -5.24080 0.05220 0.96699 1.49927 1.51585 1.57553 1.60134 1.84890 2.17068 2.57726 2.85614 3.36708 3.50215 3.73321 3.77842 3.80416 4.02375 4.16767 4.33539 4.40191 4.41210 4.51190 4.54804 4.65143 4.70929 4.72057 4.78173 4.86458 5.01323 5.03309 5.19188 5.20409 5.24260 5.37175 5.42650 5.54641 6.26011 6.37353 6.50670 6.96514 7.32787 8.03490 8.28544 9.29868 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031734 B = 0.003825 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.129043 B = 7318.775022 C = 7859.359073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.202 3.798 3 N -0.484 5.484 4 C -0.094 4.094 5 C 0.605 3.395 6 O -0.573 6.573 7 N -0.594 5.594 8 C 0.117 3.883 9 C -0.148 4.148 10 C 0.173 3.827 11 H 0.074 0.926 12 N -0.727 5.727 13 C -0.239 4.239 14 H 0.083 0.917 15 C -0.074 4.074 16 N -0.971 5.971 17 Si 0.975 3.025 18 H -0.287 1.287 19 H -0.299 1.299 20 H -0.266 1.266 21 C 0.131 3.869 22 H 0.050 0.950 23 C -0.143 4.143 24 C 0.027 3.973 25 O -0.195 6.195 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 -18.052 -7.458 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.008 4.008 3 N -0.215 5.215 4 C -0.213 4.213 5 C 0.394 3.606 6 O -0.454 6.454 7 N -0.325 5.325 8 C -0.005 4.005 9 C -0.189 4.189 10 C 0.063 3.937 11 H 0.092 0.908 12 N -0.366 5.366 13 C -0.371 4.371 14 H 0.101 0.899 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.804 3.196 18 H -0.214 1.214 19 H -0.226 1.226 20 H -0.191 1.191 21 C 0.026 3.974 22 H 0.068 0.932 23 C -0.201 4.201 24 C -0.048 4.048 25 O -0.081 6.081 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.203 0.797 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -15.519 -17.570 -7.550 24.628 hybrid contribution 1.119 0.379 0.585 1.318 sum -14.400 -17.191 -6.965 23.482 Atomic orbital electron populations 1.20615 0.77477 1.06786 1.06492 1.27420 0.98185 0.77576 0.97570 1.70825 1.00460 1.30729 1.19465 1.21511 0.91820 0.93518 1.14450 1.16786 0.86778 0.80629 0.76368 1.90772 1.25755 1.75204 1.53636 1.48358 1.09633 1.04157 1.70384 1.22513 0.84606 0.91340 1.02049 1.23432 0.99212 0.96073 1.00194 1.21409 0.90489 0.87112 0.94670 0.90770 1.42496 1.55888 1.02648 1.35571 1.19643 1.22620 0.83449 1.11342 0.89867 1.25585 1.00215 1.02466 0.98393 1.69837 1.35633 1.35065 1.21636 0.85120 0.76304 0.80141 0.78057 1.21394 1.22633 1.19089 1.21768 0.88591 0.88495 0.98504 0.93174 1.21937 0.99822 1.01910 0.96477 1.25642 0.85683 0.94889 0.98552 1.84438 1.16376 1.38064 1.69221 0.86936 0.87156 0.86890 0.90289 0.88199 0.89194 0.92784 0.79666 0.94074 0.91485 0.91802 0.92581 0.73080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.23 0.75 0.38 16 2 C 0.20 3.46 8.30 88.39 0.73 4.20 16 3 N -0.48 -11.64 8.43 -293.03 -2.47 -14.11 16 4 C -0.09 -2.58 6.81 40.41 0.28 -2.31 16 5 C 0.61 20.71 7.64 86.66 0.66 21.37 16 6 O -0.57 -22.29 15.93 -4.08 -0.07 -22.35 16 7 N -0.59 -20.33 3.06 -791.90 -2.43 -22.76 16 8 C 0.12 3.47 6.15 86.85 0.53 4.00 16 9 C -0.15 -5.10 6.77 31.99 0.22 -4.88 16 10 C 0.17 6.88 3.14 46.18 0.14 7.03 16 11 H 0.07 2.87 7.80 -2.38 -0.02 2.85 16 12 N -0.73 -36.64 5.22 -317.33 -1.66 -38.29 16 13 C -0.24 -12.98 9.96 84.04 0.84 -12.14 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 16 N -0.97 -59.72 13.06 21.65 0.28 -59.43 16 17 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C 0.13 4.97 3.21 45.34 0.15 5.12 16 22 H 0.05 2.19 7.72 -2.39 -0.02 2.17 16 23 C -0.14 -5.03 9.10 71.98 0.66 -4.37 16 24 C 0.03 0.55 11.95 67.32 0.80 1.35 16 25 O -0.19 -3.46 10.73 0.32 0.00 -3.46 16 26 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.84 6.13 -2.38 -0.01 2.83 16 31 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.37 20.62 7.57 -92.71 -0.70 19.91 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.02 6.88 -2.39 -0.02 2.00 16 38 H 0.25 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -71.73 321.78 2.30 -69.43 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.38 Total: 27.32 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.22 Total: 15.99 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -6.27 Total: -134.60 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.06 Total: -25.81 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.73 2.30 -69.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986189284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.203 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds