Wall clock time and date at job start Tue Mar 31 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33737 * 2 1 4 4 O 1.20654 * 112.30291 * 180.30145 * 3 2 1 5 5 C 1.33494 * 113.15749 * 359.71106 * 4 3 2 6 6 C 1.37364 * 106.33725 * 0.02562 * 5 4 3 7 7 C 1.47399 * 128.56161 * 179.97438 * 6 5 4 8 8 O 1.21609 * 119.99884 * 187.49287 * 7 6 5 9 9 N 1.34773 * 120.00239 * 7.49334 * 7 6 5 10 10 C 1.47430 * 125.64604 * 357.71755 * 9 7 6 11 11 C 1.54916 * 104.82868 * 155.92016 * 10 9 7 12 12 C 1.55154 * 101.58361 * 37.01197 * 11 10 9 13 13 H 1.09003 * 110.72168 * 82.85847 * 12 11 10 14 14 N 1.46504 * 110.72154 * 205.95716 * 12 11 10 15 15 C 1.36932 * 119.99982 * 271.15772 * 14 12 11 16 16 H 1.08008 * 119.99991 * 359.97438 * 15 14 12 17 17 C 1.38808 * 120.00144 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00205 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99808 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47011 * 90.00292 * 19 17 15 21 21 H 1.48505 * 109.46902 * 210.00038 * 19 17 15 22 22 H 1.48497 * 109.47197 * 329.99803 * 19 17 15 23 23 C 1.47026 * 125.65222 * 177.77611 * 9 7 6 24 24 H 1.08998 * 109.88057 * 300.43062 * 23 9 7 25 25 C 1.53001 * 109.87993 * 61.58948 * 23 9 7 26 26 H 1.09002 * 109.47483 * 270.14843 * 1 2 3 27 27 H 1.09003 * 109.46895 * 30.15003 * 1 2 3 28 28 H 1.08997 * 109.47084 * 150.14085 * 1 2 3 29 29 H 1.07994 * 126.83412 * 180.02562 * 5 4 3 30 30 H 1.08999 * 110.36619 * 37.08805 * 10 9 7 31 31 H 1.08998 * 110.46265 * 274.80255 * 10 9 7 32 32 H 1.08994 * 111.00335 * 278.93423 * 11 10 9 33 33 H 1.08998 * 111.00153 * 155.08652 * 11 10 9 34 34 H 0.96997 * 120.00053 * 91.15230 * 14 12 11 35 35 H 0.96994 * 120.00011 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.46846 * 177.81041 * 25 23 9 37 37 H 1.08994 * 109.47514 * 297.81353 * 25 23 9 38 38 H 1.09003 * 109.46595 * 57.81810 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6008 -0.0047 6 6 2.3991 -1.1696 0.0025 7 6 2.0400 -2.5992 0.0061 8 8 0.8785 -2.9347 -0.1247 9 7 2.9989 -3.5345 0.1545 10 6 4.4446 -3.2714 0.2744 11 6 5.0118 -4.5057 1.0192 12 6 4.1549 -5.6520 0.4201 13 1 4.5647 -5.9813 -0.5348 14 7 4.0627 -6.7744 1.3571 15 6 5.0072 -7.7656 1.3333 16 1 5.8200 -7.7201 0.6234 17 6 4.9202 -8.8288 2.2214 18 7 5.8278 -9.7817 2.1982 19 14 3.5149 -8.9071 3.4496 20 1 2.3718 -9.6394 2.8478 21 1 3.9668 -9.6151 4.6743 22 1 3.0891 -7.5291 3.8032 23 6 2.7768 -4.9863 0.2223 24 1 2.1265 -5.2229 1.0645 25 6 2.1439 -5.4773 -1.0813 26 1 -0.3634 0.0027 1.0277 27 1 -0.3633 0.8887 -0.5162 28 1 -0.3633 -0.8912 -0.5116 29 1 4.5966 -1.1196 -0.0086 30 1 4.6184 -2.3653 0.8547 31 1 4.8988 -3.1821 -0.7124 32 1 4.8532 -4.4202 2.0942 33 1 6.0683 -4.6477 0.7918 34 1 3.3326 -6.8155 1.9944 35 1 5.7668 -10.5248 2.8186 36 1 2.0180 -6.5592 -1.0391 37 1 1.1715 -5.0032 -1.2143 38 1 2.7916 -5.2193 -1.9192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986793793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:06 Heat of formation + Delta-G solvation = 53.763996 kcal Electronic energy + Delta-G solvation = -22000.137615 eV Core-core repulsion = 18653.998833 eV Total energy + Delta-G solvation = -3346.138782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -45.11886 -40.17019 -37.64053 -34.67284 -34.48164 -32.78314 -31.50143 -31.00290 -29.74167 -28.80028 -25.66427 -24.99460 -23.05011 -22.38384 -21.34165 -20.45838 -19.68051 -17.94010 -17.73937 -17.44022 -16.85997 -16.31240 -15.52053 -14.71223 -14.35844 -14.18343 -13.95186 -13.57259 -13.48531 -13.29325 -12.96804 -12.81192 -12.76067 -12.42350 -12.09297 -11.87359 -11.55408 -11.37925 -11.30084 -10.96836 -10.75282 -10.48527 -10.17922 -10.12945 -9.95822 -9.94588 -9.69496 -9.05242 -8.67716 -7.42525 -5.88503 -3.26535 0.85933 1.58484 2.55795 3.05524 3.09543 3.31106 3.34471 3.40014 3.81787 4.07530 4.42330 4.49313 4.65434 4.70968 4.91700 5.00715 5.14927 5.22662 5.31562 5.34609 5.38376 5.49609 5.51058 5.53474 5.69057 5.75312 5.88339 5.95521 6.06829 6.22840 6.38957 6.42754 6.48736 6.68595 7.44865 7.84467 7.95930 8.07877 8.29721 9.05912 9.78528 9.96127 11.29066 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.004157 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.305612 B = 6733.296277 C = 7058.834743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 N -0.362 5.362 4 O 0.094 5.906 5 C -0.019 4.019 6 C -0.245 4.245 7 C 0.607 3.393 8 O -0.531 6.531 9 N -0.602 5.602 10 C 0.081 3.919 11 C -0.155 4.155 12 C 0.182 3.818 13 H 0.077 0.923 14 N -0.738 5.738 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.929 5.929 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.127 3.873 24 H 0.077 0.923 25 C -0.157 4.157 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.235 0.765 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 18.475 -5.289 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 N -0.070 5.070 4 O 0.035 5.965 5 C -0.101 4.101 6 C -0.253 4.253 7 C 0.395 3.605 8 O -0.409 6.409 9 N -0.335 5.335 10 C -0.042 4.042 11 C -0.196 4.196 12 C 0.070 3.930 13 H 0.095 0.905 14 N -0.380 5.380 15 C -0.380 4.380 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.576 5.576 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.023 3.977 24 H 0.095 0.905 25 C -0.215 4.215 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.251 0.749 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.369 19.462 -5.411 20.901 hybrid contribution -0.754 -1.000 1.051 1.635 sum -6.123 18.462 -4.360 19.934 Atomic orbital electron populations 1.20284 0.84877 1.04487 1.03891 1.24864 0.98962 0.86284 0.99310 1.73659 0.89353 1.23680 1.20328 1.84573 1.21503 1.23305 1.67124 1.27255 1.00975 0.83769 0.98093 1.22352 0.92813 0.95583 1.14505 1.16415 0.84501 0.82455 0.77130 1.90768 1.18199 1.81501 1.50395 1.48343 1.06931 1.07046 1.71187 1.22812 0.80624 1.00044 1.00685 1.23562 1.01262 0.94111 1.00629 1.21223 0.90267 0.87162 0.94332 0.90485 1.42689 1.31303 1.23971 1.39986 1.19011 1.04063 0.98430 1.16529 0.88938 1.24656 0.97990 0.96761 0.99148 1.69690 1.35603 1.12330 1.39944 0.86604 0.82909 0.77509 0.81804 1.20857 1.21589 1.20316 1.21984 0.99019 0.77711 0.98938 0.90513 1.22075 1.01195 1.02050 0.96148 0.89849 0.90464 0.88412 0.74920 0.90782 0.90711 0.90498 0.89696 0.80330 0.92861 0.90910 0.91698 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.20 36.01 0.37 -0.43 16 2 C 0.07 0.84 7.58 -79.77 -0.60 0.24 16 3 N -0.36 -4.46 12.01 34.78 0.42 -4.05 16 4 O 0.09 1.00 11.06 18.65 0.21 1.20 16 5 C -0.02 -0.18 10.70 30.41 0.33 0.15 16 6 C -0.25 -2.99 6.39 -102.89 -0.66 -3.65 16 7 C 0.61 8.77 7.65 -12.53 -0.10 8.68 16 8 O -0.53 -9.07 14.63 5.27 0.08 -9.00 16 9 N -0.60 -8.15 3.07 -164.27 -0.50 -8.66 16 10 C 0.08 0.85 5.43 -2.52 -0.01 0.84 16 11 C -0.15 -2.15 6.77 -24.58 -0.17 -2.31 16 12 C 0.18 3.07 3.12 -66.10 -0.21 2.86 16 13 H 0.08 1.32 7.81 -51.93 -0.41 0.92 16 14 N -0.74 -15.98 5.04 -51.65 -0.26 -16.24 16 15 C -0.25 -6.56 10.45 -15.06 -0.16 -6.72 16 16 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 17 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 18 N -0.93 -27.94 13.97 55.49 0.78 -27.16 16 19 Si 0.88 21.24 27.73 -169.99 -4.71 16.52 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 23 C 0.13 1.97 3.23 -66.95 -0.22 1.76 16 24 H 0.08 1.32 7.71 -51.93 -0.40 0.92 16 25 C -0.16 -2.33 9.09 37.16 0.34 -1.99 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.09 7.02 -51.93 -0.36 0.73 16 29 H 0.24 1.29 5.07 -52.49 -0.27 1.02 16 30 H 0.07 0.60 5.23 -51.93 -0.27 0.32 16 31 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.36 7.94 5.41 -40.82 -0.22 7.72 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.01 6.83 -51.93 -0.35 0.65 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -31.90 312.78 -5.31 -37.21 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.83 Total: 5.82 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.18 Total: -0.37 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.43 Total: -56.11 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.28 Total: -7.79 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.90 -5.31 -37.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986793793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.971 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds