Wall clock time and date at job start Tue Mar 31 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30014 * 127.33316 * 2 1 4 4 O 1.20659 * 112.29862 * 180.27503 * 3 2 1 5 5 C 1.33493 * 113.15955 * 359.72636 * 4 3 2 6 6 C 1.37365 * 106.34133 * 0.02562 * 5 4 3 7 7 C 1.47390 * 128.56589 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00096 * 173.52495 * 7 6 5 9 9 N 1.34779 * 120.00013 * 353.53004 * 7 6 5 10 10 C 1.47418 * 125.64593 * 354.37880 * 9 7 6 11 11 C 1.55126 * 104.94163 * 204.03517 * 10 9 7 12 12 C 1.55152 * 101.48408 * 323.22383 * 11 10 9 13 13 H 1.09003 * 110.72011 * 276.82673 * 12 11 10 14 14 N 1.46505 * 110.72211 * 153.73523 * 12 11 10 15 15 C 1.36928 * 120.00107 * 88.83765 * 14 12 11 16 16 H 1.07998 * 120.00533 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99949 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99854 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46923 * 269.99683 * 19 17 15 21 21 H 1.48504 * 109.47132 * 29.99808 * 19 17 15 22 22 H 1.48502 * 109.47150 * 149.99852 * 19 17 15 23 23 C 1.47022 * 125.64977 * 174.41280 * 9 7 6 24 24 H 1.09000 * 109.87988 * 59.48690 * 23 9 7 25 25 C 1.53001 * 109.88485 * 298.32772 * 23 9 7 26 26 H 1.08998 * 109.47004 * 270.14826 * 1 2 3 27 27 H 1.08997 * 109.46885 * 30.15297 * 1 2 3 28 28 H 1.09004 * 109.47040 * 150.15512 * 1 2 3 29 29 H 1.07997 * 126.82760 * 180.02562 * 5 4 3 30 30 H 1.09004 * 110.36900 * 322.99703 * 10 9 7 31 31 H 1.08997 * 110.37259 * 85.32233 * 10 9 7 32 32 H 1.08995 * 111.16477 * 205.12989 * 11 10 9 33 33 H 1.09004 * 110.93344 * 81.21122 * 11 10 9 34 34 H 0.97003 * 119.99658 * 268.84248 * 14 12 11 35 35 H 0.97000 * 119.99610 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.46997 * 302.18811 * 25 23 9 37 37 H 1.09000 * 109.46867 * 62.18824 * 25 23 9 38 38 H 1.08997 * 109.47362 * 182.19017 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6495 -0.6007 -0.0041 6 6 2.3992 -1.1697 0.0026 7 6 2.0402 -2.5992 0.0061 8 8 0.8777 -2.9338 0.1309 9 7 3.0002 -3.5354 -0.1289 10 6 4.4244 -3.2722 -0.4036 11 6 4.9516 -4.5733 -1.0636 12 6 4.1682 -5.6576 -0.2778 13 1 4.6650 -5.8848 0.6655 14 7 4.0117 -6.8707 -1.0842 15 6 4.9699 -7.8481 -1.0437 16 1 5.8408 -7.7250 -0.4170 17 6 4.8219 -8.9973 -1.8082 18 7 3.7603 -9.1476 -2.5716 19 14 6.1287 -10.3309 -1.7524 20 1 7.1505 -10.0666 -2.7969 21 1 6.7762 -10.3339 -0.4160 22 1 5.4982 -11.6525 -1.9999 23 6 2.8004 -4.9885 -0.0272 24 1 2.0833 -5.3175 -0.7792 25 6 2.2939 -5.3475 1.3712 26 1 -0.3633 0.0027 1.0276 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5114 29 1 4.5968 -1.1194 -0.0076 30 1 4.5295 -2.4295 -1.0871 31 1 4.9604 -3.0774 0.5253 32 1 6.0258 -4.6826 -0.9150 33 1 4.7006 -4.6014 -2.1240 34 1 3.2294 -6.9815 -1.6469 35 1 3.6568 -9.9508 -3.1055 36 1 3.0075 -4.9976 2.1171 37 1 1.3280 -4.8716 1.5410 38 1 2.1852 -6.4290 1.4517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986793794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:12 Heat of formation + Delta-G solvation = 46.360349 kcal Electronic energy + Delta-G solvation = -21919.762045 eV Core-core repulsion = 18573.302217 eV Total energy + Delta-G solvation = -3346.459828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.06777 -40.04286 -37.50946 -34.61202 -34.31771 -32.71052 -31.33274 -30.91929 -29.32406 -28.69100 -25.43619 -24.94251 -23.30168 -22.31294 -21.30729 -20.37277 -19.47023 -17.89619 -17.42724 -17.31517 -16.77652 -16.10818 -15.44934 -14.74267 -14.30526 -14.01361 -13.72639 -13.53140 -13.40965 -13.27583 -12.96817 -12.82542 -12.67375 -12.27428 -11.99676 -11.65818 -11.44349 -11.26096 -11.10545 -10.89746 -10.67914 -10.34834 -10.15011 -10.06854 -9.94293 -9.88507 -9.76648 -9.01471 -8.56401 -7.10594 -5.87410 -3.18487 0.91660 1.63485 2.64180 3.12519 3.17745 3.37192 3.42729 3.44616 3.87181 4.13147 4.48851 4.53757 4.71606 4.82046 5.04449 5.18527 5.20463 5.34127 5.38968 5.40092 5.44489 5.55567 5.58386 5.67600 5.82883 5.97782 6.00238 6.03136 6.17945 6.34622 6.47003 6.51879 6.61408 6.81872 7.55775 7.59972 8.00809 8.16764 8.29555 9.41306 9.94734 10.29295 11.34588 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.003798 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.617676 B = 7371.297729 C = 7773.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.363 5.363 4 O 0.093 5.907 5 C -0.017 4.017 6 C -0.244 4.244 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.602 5.602 10 C 0.084 3.916 11 C -0.155 4.155 12 C 0.177 3.823 13 H 0.068 0.932 14 N -0.714 5.714 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.291 1.291 23 C 0.129 3.871 24 H 0.081 0.919 25 C -0.154 4.154 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.232 0.768 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 16.793 5.948 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 N -0.071 5.071 4 O 0.034 5.966 5 C -0.099 4.099 6 C -0.251 4.251 7 C 0.394 3.606 8 O -0.408 6.408 9 N -0.335 5.335 10 C -0.039 4.039 11 C -0.196 4.196 12 C 0.065 3.935 13 H 0.086 0.914 14 N -0.354 5.354 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.576 5.576 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.025 3.975 24 H 0.099 0.901 25 C -0.212 4.212 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.660 17.813 6.054 18.825 hybrid contribution 0.621 -1.626 -0.285 1.764 sum -0.040 16.187 5.768 17.184 Atomic orbital electron populations 1.20254 0.84856 1.04289 1.03911 1.24872 0.98973 0.86320 0.99268 1.73658 0.89334 1.23669 1.20436 1.84564 1.21525 1.23270 1.67207 1.27055 1.00884 0.83762 0.98182 1.22387 0.92766 0.95665 1.14303 1.16408 0.84525 0.82430 0.77254 1.90780 1.17948 1.81577 1.50493 1.48349 1.08383 1.07104 1.69667 1.22748 0.81401 1.00141 0.99653 1.23633 1.01137 0.93580 1.01260 1.21245 0.90669 0.87015 0.94603 0.91433 1.42348 1.25864 1.16095 1.51095 1.19195 1.00195 0.96375 1.22015 0.90939 1.24772 0.97860 0.98436 0.99418 1.69663 1.28268 1.28514 1.31152 0.86183 0.80781 0.81497 0.77635 1.21626 1.20653 1.21715 1.21984 0.99714 0.77556 0.98208 0.90086 1.22044 1.01189 1.02529 0.95478 0.89752 0.90521 0.88650 0.75238 0.90981 0.91174 0.90187 0.90416 0.77927 0.93300 0.92995 0.92115 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.11 36.01 0.36 -0.45 16 2 C 0.07 0.87 7.58 -79.76 -0.60 0.27 16 3 N -0.36 -4.60 12.01 34.78 0.42 -4.18 16 4 O 0.09 1.02 11.06 18.65 0.21 1.23 16 5 C -0.02 -0.16 10.66 30.41 0.32 0.16 16 6 C -0.24 -3.12 6.36 -102.89 -0.65 -3.77 16 7 C 0.61 9.24 7.59 -12.53 -0.10 9.14 16 8 O -0.53 -9.58 15.07 5.27 0.08 -9.50 16 9 N -0.60 -8.66 3.07 -164.16 -0.50 -9.17 16 10 C 0.08 0.94 5.19 -2.42 -0.01 0.93 16 11 C -0.15 -2.27 6.79 -24.47 -0.17 -2.44 16 12 C 0.18 3.14 3.12 -66.10 -0.21 2.94 16 13 H 0.07 1.20 7.81 -51.93 -0.41 0.79 16 14 N -0.71 -16.55 5.24 -51.66 -0.27 -16.82 16 15 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 19 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.13 2.14 3.18 -66.96 -0.21 1.93 16 24 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 25 C -0.15 -2.42 9.10 37.16 0.34 -2.09 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.12 7.25 -51.93 -0.38 0.74 16 29 H 0.23 1.38 5.19 -52.49 -0.27 1.10 16 30 H 0.07 0.65 5.98 -51.93 -0.31 0.34 16 31 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.39 9.76 7.53 -40.82 -0.31 9.45 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.99 7.10 -51.93 -0.37 0.62 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -31.06 316.94 -5.70 -36.76 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.93 Total: 7.05 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.17 Total: -0.23 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.37 Total: -56.43 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.29 Total: -8.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.06 -5.70 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986793794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.122 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds