Wall clock time and date at job start Tue Mar 31 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30014 * 127.33316 * 2 1 4 4 O 1.20659 * 112.29862 * 180.27503 * 3 2 1 5 5 C 1.33493 * 113.15955 * 359.72636 * 4 3 2 6 6 C 1.37365 * 106.34133 * 0.02562 * 5 4 3 7 7 C 1.47390 * 128.56589 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00096 * 173.52495 * 7 6 5 9 9 N 1.34779 * 120.00013 * 353.53004 * 7 6 5 10 10 C 1.47418 * 125.64593 * 354.37880 * 9 7 6 11 11 C 1.55126 * 104.94163 * 204.03517 * 10 9 7 12 12 C 1.55152 * 101.48408 * 323.22383 * 11 10 9 13 13 H 1.09003 * 110.72011 * 276.82673 * 12 11 10 14 14 N 1.46505 * 110.72211 * 153.73523 * 12 11 10 15 15 C 1.36928 * 120.00107 * 88.83765 * 14 12 11 16 16 H 1.07998 * 120.00533 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99949 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99854 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46923 * 269.99683 * 19 17 15 21 21 H 1.48504 * 109.47132 * 29.99808 * 19 17 15 22 22 H 1.48502 * 109.47150 * 149.99852 * 19 17 15 23 23 C 1.47022 * 125.64977 * 174.41280 * 9 7 6 24 24 H 1.09000 * 109.87988 * 59.48690 * 23 9 7 25 25 C 1.53001 * 109.88485 * 298.32772 * 23 9 7 26 26 H 1.08998 * 109.47004 * 270.14826 * 1 2 3 27 27 H 1.08997 * 109.46885 * 30.15297 * 1 2 3 28 28 H 1.09004 * 109.47040 * 150.15512 * 1 2 3 29 29 H 1.07997 * 126.82760 * 180.02562 * 5 4 3 30 30 H 1.09004 * 110.36900 * 322.99703 * 10 9 7 31 31 H 1.08997 * 110.37259 * 85.32233 * 10 9 7 32 32 H 1.08995 * 111.16477 * 205.12989 * 11 10 9 33 33 H 1.09004 * 110.93344 * 81.21122 * 11 10 9 34 34 H 0.97003 * 119.99658 * 268.84248 * 14 12 11 35 35 H 0.97000 * 119.99610 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.46997 * 302.18811 * 25 23 9 37 37 H 1.09000 * 109.46867 * 62.18824 * 25 23 9 38 38 H 1.08997 * 109.47362 * 182.19017 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6495 -0.6007 -0.0041 6 6 2.3992 -1.1697 0.0026 7 6 2.0402 -2.5992 0.0061 8 8 0.8777 -2.9338 0.1309 9 7 3.0002 -3.5354 -0.1289 10 6 4.4244 -3.2722 -0.4036 11 6 4.9516 -4.5733 -1.0636 12 6 4.1682 -5.6576 -0.2778 13 1 4.6650 -5.8848 0.6655 14 7 4.0117 -6.8707 -1.0842 15 6 4.9699 -7.8481 -1.0437 16 1 5.8408 -7.7250 -0.4170 17 6 4.8219 -8.9973 -1.8082 18 7 3.7603 -9.1476 -2.5716 19 14 6.1287 -10.3309 -1.7524 20 1 7.1505 -10.0666 -2.7969 21 1 6.7762 -10.3339 -0.4160 22 1 5.4982 -11.6525 -1.9999 23 6 2.8004 -4.9885 -0.0272 24 1 2.0833 -5.3175 -0.7792 25 6 2.2939 -5.3475 1.3712 26 1 -0.3633 0.0027 1.0276 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5114 29 1 4.5968 -1.1194 -0.0076 30 1 4.5295 -2.4295 -1.0871 31 1 4.9604 -3.0774 0.5253 32 1 6.0258 -4.6826 -0.9150 33 1 4.7006 -4.6014 -2.1240 34 1 3.2294 -6.9815 -1.6469 35 1 3.6568 -9.9508 -3.1055 36 1 3.0075 -4.9976 2.1171 37 1 1.3280 -4.8716 1.5410 38 1 2.1852 -6.4290 1.4517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986793794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:12 Heat of formation + Delta-G solvation = 25.431778 kcal Electronic energy + Delta-G solvation = -21920.669576 eV Core-core repulsion = 18573.302217 eV Total energy + Delta-G solvation = -3347.367359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.98061 -41.24911 -38.80367 -35.97875 -35.52976 -33.96517 -32.83552 -32.09004 -30.78032 -29.64623 -26.94631 -26.00685 -24.94345 -23.45205 -22.27161 -21.64000 -20.67750 -19.17628 -18.80493 -18.39199 -17.85479 -17.38147 -16.67290 -16.38041 -15.50792 -15.42719 -15.19318 -14.79383 -14.56865 -14.26155 -14.11995 -14.07631 -13.65963 -13.54386 -13.29200 -13.05810 -12.87805 -12.63930 -12.50497 -12.34145 -12.13795 -12.10343 -11.70202 -11.55604 -11.16145 -10.98072 -10.89691 -10.78870 -9.74142 -9.00976 -7.92213 -5.22018 0.04131 0.69701 1.51425 1.52681 1.60594 1.62662 2.07331 2.21846 2.59448 2.95874 3.27789 3.39100 3.53359 3.70788 3.81741 3.86261 4.01379 4.19078 4.33472 4.36742 4.40311 4.47556 4.58963 4.59887 4.63623 4.68009 4.74588 4.90953 5.04575 5.13614 5.22135 5.26472 5.31360 5.47475 5.57674 6.27998 6.43771 6.99600 7.17094 7.34799 8.07103 8.30018 9.31389 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.003798 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.617676 B = 7371.297729 C = 7773.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.055 3.945 3 N -0.377 5.377 4 O 0.100 5.900 5 C 0.023 3.977 6 C -0.275 4.275 7 C 0.605 3.395 8 O -0.570 6.570 9 N -0.601 5.601 10 C 0.086 3.914 11 C -0.147 4.147 12 C 0.170 3.830 13 H 0.077 0.923 14 N -0.730 5.730 15 C -0.235 4.235 16 H 0.086 0.914 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.265 1.265 22 H -0.303 1.303 23 C 0.135 3.865 24 H 0.045 0.955 25 C -0.145 4.145 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.273 0.727 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 18.735 7.188 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 N -0.085 5.085 4 O 0.042 5.958 5 C -0.059 4.059 6 C -0.282 4.282 7 C 0.395 3.605 8 O -0.451 6.451 9 N -0.334 5.334 10 C -0.036 4.036 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.095 0.905 14 N -0.369 5.369 15 C -0.366 4.366 16 H 0.104 0.896 17 C -0.267 4.267 18 N -0.623 5.623 19 Si 0.801 3.199 20 H -0.215 1.215 21 H -0.190 1.190 22 H -0.230 1.230 23 C 0.031 3.969 24 H 0.064 0.936 25 C -0.203 4.203 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.288 0.712 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.995 19.826 7.333 21.232 hybrid contribution -0.180 -2.135 -0.633 2.234 sum 1.815 17.691 6.700 19.004 Atomic orbital electron populations 1.20263 0.84339 1.04234 1.04386 1.25163 0.99770 0.86526 0.99261 1.73672 0.89846 1.23810 1.21205 1.84557 1.20834 1.23842 1.66606 1.27656 1.01037 0.82910 0.94285 1.22145 0.94353 0.94163 1.17545 1.16712 0.83990 0.83417 0.76397 1.90760 1.19666 1.82338 1.52341 1.48328 1.09834 1.05765 1.69479 1.23018 0.79320 0.99172 1.02065 1.23433 1.01704 0.93989 0.99611 1.21470 0.91788 0.86075 0.94629 0.90528 1.42538 1.24924 1.17711 1.51711 1.19636 1.00345 0.96324 1.20343 0.89589 1.25558 0.99958 1.01018 1.00213 1.69833 1.30587 1.28884 1.32972 0.85167 0.78325 0.78277 0.78135 1.21482 1.18988 1.22994 1.21670 0.98297 0.79322 0.97628 0.93639 1.21938 1.01243 1.01563 0.95526 0.89032 0.88979 0.90204 0.71203 0.87845 0.86988 0.88372 0.92708 0.79796 0.94196 0.90817 0.93135 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.11 71.24 0.72 -0.86 16 2 C 0.06 1.32 7.58 45.16 0.34 1.66 16 3 N -0.38 -8.68 12.01 -44.78 -0.54 -9.22 16 4 O 0.10 1.83 11.06 76.99 0.85 2.68 16 5 C 0.02 0.34 10.66 67.61 0.72 1.06 16 6 C -0.27 -6.35 6.36 -18.74 -0.12 -6.47 16 7 C 0.60 17.73 7.59 86.65 0.66 18.39 16 8 O -0.57 -20.97 15.07 -4.06 -0.06 -21.03 16 9 N -0.60 -16.11 3.07 -791.52 -2.43 -18.54 16 10 C 0.09 1.54 5.19 86.93 0.45 1.99 16 11 C -0.15 -3.89 6.79 32.06 0.22 -3.67 16 12 C 0.17 5.82 3.12 46.17 0.14 5.97 16 13 H 0.08 2.51 7.81 -2.39 -0.02 2.49 16 14 N -0.73 -34.11 5.24 -317.34 -1.66 -35.77 16 15 C -0.23 -12.03 9.97 84.04 0.84 -11.19 16 16 H 0.09 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 18 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 19 Si 0.97 44.08 29.55 68.60 2.03 46.11 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 C 0.14 4.46 3.18 45.34 0.14 4.61 16 24 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 25 C -0.14 -4.49 9.10 71.98 0.65 -3.84 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.93 7.25 -2.39 -0.02 1.91 16 29 H 0.27 1.40 5.19 -2.91 -0.02 1.38 16 30 H 0.10 1.27 5.98 -2.38 -0.01 1.26 16 31 H 0.11 1.22 7.85 -2.39 -0.02 1.20 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.37 19.46 7.53 -92.71 -0.70 18.76 16 35 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.66 7.10 -2.39 -0.02 1.65 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -70.38 316.94 4.11 -66.27 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.39 Total: 23.43 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.24 Total: 3.99 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -4.34 Total: -121.43 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.79 Total: -18.36 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.38 4.11 -66.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986793794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.702 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds