Wall clock time and date at job start Tue Mar 31 2020 01:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30012 * 127.33851 * 2 1 4 4 O 1.20661 * 112.29918 * 180.30465 * 3 2 1 5 5 C 1.33483 * 113.15864 * 359.71546 * 4 3 2 6 6 C 1.37362 * 106.34496 * 359.97438 * 5 4 3 7 7 C 1.47401 * 128.56684 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99662 * 187.53713 * 7 6 5 9 9 N 1.34771 * 120.00001 * 7.53726 * 7 6 5 10 10 C 1.47430 * 125.64847 * 357.64132 * 9 7 6 11 11 C 1.54907 * 104.83243 * 155.83724 * 10 9 7 12 12 C 1.55160 * 101.61543 * 36.99140 * 11 10 9 13 13 H 1.08999 * 110.72114 * 82.88286 * 12 11 10 14 14 N 1.46499 * 110.71923 * 206.15217 * 12 11 10 15 15 C 1.36939 * 120.00226 * 273.54502 * 14 12 11 16 16 H 1.07995 * 119.99651 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99976 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00202 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46851 * 90.00196 * 19 17 15 21 21 H 1.48494 * 109.47059 * 210.00028 * 19 17 15 22 22 H 1.48496 * 109.46998 * 329.99924 * 19 17 15 23 23 C 1.47023 * 125.64852 * 177.60345 * 9 7 6 24 24 H 1.08996 * 109.88316 * 61.52115 * 23 9 7 25 25 C 1.52992 * 109.88263 * 300.50896 * 23 9 7 26 26 H 1.09003 * 109.47063 * 270.14206 * 1 2 3 27 27 H 1.08999 * 109.46808 * 30.14369 * 1 2 3 28 28 H 1.08998 * 109.47531 * 150.14214 * 1 2 3 29 29 H 1.07999 * 126.82765 * 180.02562 * 5 4 3 30 30 H 1.09003 * 110.36606 * 37.00237 * 10 9 7 31 31 H 1.09001 * 110.36767 * 274.67520 * 10 9 7 32 32 H 1.09003 * 111.00759 * 155.08655 * 11 10 9 33 33 H 1.09001 * 111.00477 * 278.90154 * 11 10 9 34 34 H 0.97000 * 119.99942 * 93.54880 * 14 12 11 35 35 H 0.96998 * 120.00302 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.47136 * 61.45290 * 25 23 9 37 37 H 1.08999 * 109.47336 * 181.45010 * 25 23 9 38 38 H 1.09004 * 109.47354 * 301.45803 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0059 5 6 3.6494 -0.6008 -0.0049 6 6 2.3991 -1.1697 0.0035 7 6 2.0400 -2.5993 0.0074 8 8 0.8785 -2.9347 -0.1232 9 7 2.9989 -3.5346 0.1558 10 6 4.4448 -3.2716 0.2738 11 6 5.0123 -4.5040 1.0213 12 6 4.1547 -5.6522 0.4267 13 1 4.5636 -5.9847 -0.5274 14 7 4.0598 -6.7698 1.3692 15 6 5.0294 -7.7366 1.3847 16 1 5.8642 -7.6751 0.7023 17 6 4.9392 -8.7958 2.2773 18 7 3.9221 -8.8705 3.1092 19 14 6.2623 -10.1144 2.2989 20 1 7.3324 -9.7262 3.2525 21 1 5.6663 -11.4067 2.7229 22 1 6.8398 -10.2584 0.9384 23 6 2.7764 -4.9861 0.2275 24 1 2.3222 -5.3377 -0.6988 25 6 1.8647 -5.3148 1.4113 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8887 -0.5161 28 1 -0.3634 -0.8912 -0.5116 29 1 4.5966 -1.1196 -0.0089 30 1 4.6193 -2.3639 0.8517 31 1 4.8967 -3.1860 -0.7144 32 1 6.0686 -4.6469 0.7934 33 1 4.8552 -4.4154 2.0963 34 1 3.3102 -6.8249 1.9823 35 1 3.8588 -9.6109 3.7328 36 1 0.8981 -4.8310 1.2708 37 1 1.7250 -6.3940 1.4736 38 1 2.3212 -4.9536 2.3329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986793799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:17 Heat of formation + Delta-G solvation = 36.184115 kcal Electronic energy + Delta-G solvation = -22037.835333 eV Core-core repulsion = 18690.934230 eV Total energy + Delta-G solvation = -3346.901103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.97889 -41.31149 -38.87937 -36.01949 -35.52219 -33.99052 -32.79105 -32.05756 -30.63468 -29.62266 -26.91607 -26.15247 -25.21289 -23.62248 -22.27505 -21.38310 -20.28354 -19.41842 -18.79700 -18.51934 -17.84653 -17.08349 -16.87792 -16.35470 -15.84938 -15.47380 -15.22950 -14.73136 -14.53133 -14.27672 -14.19620 -13.87804 -13.58651 -13.57700 -13.19650 -12.96539 -12.91515 -12.83108 -12.51459 -12.31884 -12.05335 -12.04531 -11.59769 -11.52388 -11.10110 -10.97908 -10.90467 -10.78548 -9.74628 -8.99048 -7.91652 -5.20527 0.04375 0.70040 1.51690 1.52822 1.60393 1.61829 2.08986 2.22201 2.59969 2.96264 3.27898 3.39263 3.51735 3.71837 3.81939 3.91964 3.93209 4.14611 4.34008 4.37882 4.40045 4.50205 4.59049 4.61878 4.63802 4.68561 4.76171 4.86541 5.04013 5.14982 5.22574 5.26136 5.30515 5.51361 5.58379 6.30053 6.43449 7.00064 7.17277 7.37744 8.11636 8.34139 9.32107 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.003863 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.306928 B = 7245.575819 C = 7742.091374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.377 5.377 4 O 0.099 5.901 5 C 0.018 3.982 6 C -0.274 4.274 7 C 0.605 3.395 8 O -0.568 6.568 9 N -0.600 5.600 10 C 0.084 3.916 11 C -0.144 4.144 12 C 0.165 3.835 13 H 0.072 0.928 14 N -0.733 5.733 15 C -0.237 4.237 16 H 0.084 0.916 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.267 1.267 23 C 0.138 3.862 24 H 0.070 0.930 25 C -0.146 4.146 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.275 0.725 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.380 0.620 35 H 0.249 0.751 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 17.943 -7.658 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.086 5.086 4 O 0.041 5.959 5 C -0.064 4.064 6 C -0.282 4.282 7 C 0.395 3.605 8 O -0.449 6.449 9 N -0.333 5.333 10 C -0.037 4.037 11 C -0.185 4.185 12 C 0.055 3.945 13 H 0.090 0.910 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.801 3.199 20 H -0.215 1.215 21 H -0.230 1.230 22 H -0.191 1.191 23 C 0.034 3.966 24 H 0.088 0.912 25 C -0.205 4.205 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.290 0.710 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.216 0.784 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.078 19.026 -7.792 20.588 hybrid contribution -0.025 -2.066 0.684 2.177 sum 1.053 16.960 -7.108 18.419 Atomic orbital electron populations 1.20295 0.84303 1.04547 1.04295 1.25169 0.99784 0.86489 0.99247 1.73669 0.89867 1.23869 1.21182 1.84558 1.20843 1.23897 1.66616 1.27831 1.01146 0.82915 0.94460 1.22166 0.94320 0.94259 1.17442 1.16691 0.84046 0.83350 0.76375 1.90749 1.19759 1.82201 1.52181 1.48354 1.08257 1.05897 1.70794 1.23051 0.78476 0.99573 1.02638 1.23377 1.01208 0.94171 0.99723 1.21419 0.91693 0.87686 0.93676 0.91011 1.42867 1.27961 1.24826 1.41954 1.19664 1.01819 1.00661 1.14714 0.89802 1.25525 1.00366 1.01507 0.99299 1.69816 1.33031 1.33656 1.25742 0.85172 0.78449 0.78318 0.77995 1.21523 1.22976 1.19144 1.21614 0.97238 0.79486 0.98260 0.91178 1.21838 0.99459 1.01370 0.97804 0.89303 0.88898 0.89742 0.71032 0.87665 0.87085 0.88535 0.92499 0.78378 0.94177 0.92499 0.92296 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.20 71.24 0.73 -0.89 16 2 C 0.06 1.33 7.58 45.16 0.34 1.67 16 3 N -0.38 -8.76 12.01 -44.78 -0.54 -9.30 16 4 O 0.10 1.84 11.06 77.07 0.85 2.69 16 5 C 0.02 0.27 10.70 67.61 0.72 0.99 16 6 C -0.27 -6.36 6.39 -18.74 -0.12 -6.48 16 7 C 0.61 17.55 7.61 86.66 0.66 18.20 16 8 O -0.57 -20.44 14.64 -4.05 -0.06 -20.50 16 9 N -0.60 -15.93 3.08 -791.85 -2.44 -18.37 16 10 C 0.08 1.50 5.44 86.85 0.47 1.97 16 11 C -0.14 -3.79 6.77 31.99 0.22 -3.58 16 12 C 0.17 5.67 3.46 46.20 0.16 5.83 16 13 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 14 N -0.73 -33.96 5.02 -317.25 -1.59 -35.56 16 15 C -0.24 -12.14 9.98 84.03 0.84 -11.30 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 19 Si 0.97 44.10 29.55 68.60 2.03 46.12 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C 0.14 4.52 3.47 45.35 0.16 4.67 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 C -0.15 -5.43 7.94 71.98 0.57 -4.86 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 2.00 7.02 -2.39 -0.02 1.98 16 29 H 0.27 1.51 5.06 -2.91 -0.01 1.50 16 30 H 0.11 1.23 5.22 -2.39 -0.01 1.22 16 31 H 0.11 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.38 19.25 4.93 -92.71 -0.46 18.79 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.06 2.12 6.81 -2.39 -0.02 2.10 16 37 H 0.06 2.44 6.72 -2.39 -0.02 2.42 16 38 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 Total: -1.00 -69.59 311.71 4.39 -65.20 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.64 Total: 24.53 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.21 Total: 2.63 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.29 Total: -120.67 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.79 Total: -17.81 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.59 4.39 -65.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986793799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.388 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds