Wall clock time and date at job start Tue Mar 31 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41258 * 128.07795 * 2 1 4 4 N 1.30128 * 106.59004 * 179.89600 * 3 2 1 5 5 O 1.20878 * 111.98023 * 0.40056 * 4 3 2 6 6 C 1.34639 * 111.47446 * 359.73930 * 5 4 3 7 7 C 1.47513 * 126.94736 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99843 * 179.97438 * 7 6 5 9 9 N 1.34766 * 120.00017 * 359.95728 * 7 6 5 10 10 C 1.47422 * 125.65095 * 359.69367 * 9 7 6 11 11 C 1.55133 * 104.72716 * 155.81476 * 10 9 7 12 12 C 1.55155 * 101.48060 * 37.29474 * 11 10 9 13 13 H 1.09003 * 110.71984 * 205.96892 * 12 11 10 14 14 N 1.46506 * 110.71939 * 82.69926 * 12 11 10 15 15 C 1.36933 * 120.00201 * 91.47469 * 14 12 11 16 16 H 1.08009 * 119.99976 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00300 * 180.02562 * 15 14 12 18 18 N 1.31613 * 120.00266 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99711 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47044 * 90.00126 * 19 17 15 21 21 H 1.48496 * 109.47108 * 210.00159 * 19 17 15 22 22 H 1.48497 * 109.47234 * 330.00238 * 19 17 15 23 23 C 1.47023 * 125.65159 * 179.97438 * 9 7 6 24 24 H 1.09002 * 109.88148 * 300.59791 * 23 9 7 25 25 C 1.52996 * 109.87915 * 61.60560 * 23 9 7 26 26 H 1.09001 * 109.46953 * 269.67163 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.66761 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.67391 * 1 2 3 29 29 H 1.08006 * 126.70452 * 0.04258 * 3 2 1 30 30 H 1.09003 * 110.36911 * 274.74979 * 10 9 7 31 31 H 1.09010 * 110.36763 * 37.06663 * 10 9 7 32 32 H 1.09000 * 111.19138 * 279.19158 * 11 10 9 33 33 H 1.09000 * 110.93801 * 155.28661 * 11 10 9 34 34 H 0.97003 * 119.99986 * 271.47692 * 14 12 11 35 35 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.47841 * 58.55162 * 25 23 9 37 37 H 1.09004 * 109.47293 * 178.54991 * 25 23 9 38 38 H 1.09004 * 109.47557 * 298.54816 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0023 5 8 3.5995 -0.5734 -0.0042 6 6 2.3509 -1.0771 -0.0062 7 6 1.9696 -2.5021 -0.0131 8 8 0.7953 -2.8171 -0.0137 9 7 2.9229 -3.4547 -0.0190 10 6 4.3774 -3.2146 -0.0258 11 6 4.9923 -4.5017 0.5841 12 6 4.0641 -5.5966 -0.0049 13 1 4.0457 -6.4747 0.6407 14 7 4.4841 -5.9574 -1.3613 15 6 5.3671 -6.9861 -1.5538 16 1 5.7543 -7.5313 -0.7056 17 6 5.7654 -7.3277 -2.8389 18 7 6.6145 -8.3161 -3.0239 19 14 5.0963 -6.3843 -4.3058 20 1 5.9872 -5.2340 -4.6028 21 1 5.0373 -7.2825 -5.4869 22 1 3.7325 -5.8865 -3.9940 23 6 2.6845 -4.9054 -0.0257 24 1 2.1109 -5.1909 0.8561 25 6 1.9233 -5.3018 -1.2922 26 1 -0.3633 -0.0059 1.0277 27 1 -0.3634 0.8929 -0.5087 28 1 -0.3633 -0.8870 -0.5189 29 1 2.0948 2.1541 0.0006 30 1 4.7330 -3.0680 -1.0457 31 1 4.6220 -2.3491 0.5901 32 1 4.9374 -4.4870 1.6727 33 1 6.0203 -4.6390 0.2487 34 1 4.1367 -5.4675 -2.1230 35 1 6.8932 -8.5546 -3.9219 36 1 2.4988 -5.0066 -2.1695 37 1 1.7728 -6.3814 -1.3028 38 1 0.9557 -4.8000 -1.3067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987289071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:47 Heat of formation + Delta-G solvation = 34.936299 kcal Electronic energy + Delta-G solvation = -22443.143657 eV Core-core repulsion = 19096.188445 eV Total energy + Delta-G solvation = -3346.955212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.06704 -41.38407 -39.12507 -36.08662 -35.62291 -33.92420 -33.15957 -32.25925 -31.15333 -29.20683 -26.94040 -25.59306 -25.03577 -23.80715 -22.85672 -21.40167 -20.62132 -19.84579 -18.89482 -18.73414 -17.73069 -17.00806 -16.52695 -16.37595 -15.96864 -15.27191 -15.08747 -14.95770 -14.37791 -14.34347 -14.27985 -14.16729 -14.02548 -13.55883 -13.36338 -13.24030 -12.96280 -12.58207 -12.43400 -12.37171 -12.26925 -11.97775 -11.75548 -11.59517 -11.44385 -11.27182 -10.97866 -10.57559 -9.80660 -9.31135 -8.00317 -5.32628 -0.32478 1.05050 1.36911 1.37344 1.41538 1.44521 1.82754 2.02684 2.47836 3.16193 3.26653 3.35015 3.54277 3.61738 3.66262 3.88161 3.94611 4.16630 4.21961 4.28648 4.33516 4.48420 4.69892 4.74156 4.74815 4.80329 4.89413 4.91807 5.01407 5.16774 5.23169 5.28253 5.29788 5.35887 5.82181 6.22068 6.26675 6.70611 7.01015 7.09279 7.84706 8.02221 9.21042 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004908 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.789879 B = 5703.363838 C = 5817.748415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.118 4.118 3 C 0.001 3.999 4 N -0.367 5.367 5 O 0.102 5.898 6 C -0.107 4.107 7 C 0.615 3.385 8 O -0.535 6.535 9 N -0.597 5.597 10 C 0.102 3.898 11 C -0.146 4.146 12 C 0.168 3.832 13 H 0.085 0.915 14 N -0.740 5.740 15 C -0.220 4.220 16 H 0.069 0.931 17 C -0.054 4.054 18 N -0.981 5.981 19 Si 0.936 3.064 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.256 1.256 23 C 0.132 3.868 24 H 0.100 0.900 25 C -0.149 4.149 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.237 0.763 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 19.057 8.566 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.177 4.177 4 N -0.070 5.070 5 O 0.033 5.967 6 C -0.172 4.172 7 C 0.402 3.598 8 O -0.414 6.414 9 N -0.329 5.329 10 C -0.020 4.020 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.103 0.897 14 N -0.384 5.384 15 C -0.351 4.351 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.632 5.632 19 Si 0.765 3.235 20 H -0.209 1.209 21 H -0.226 1.226 22 H -0.181 1.181 23 C 0.029 3.971 24 H 0.117 0.883 25 C -0.207 4.207 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.253 0.747 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.200 19.292 8.612 23.912 hybrid contribution -0.508 -0.022 -1.365 1.457 sum -11.707 19.270 7.247 23.684 Atomic orbital electron populations 1.20399 0.84802 1.04605 1.04194 1.22045 1.00051 0.89907 1.00287 1.25610 0.86533 1.03447 1.02125 1.73757 1.24571 0.91459 1.17191 1.85043 1.28172 1.15617 1.67911 1.23951 0.85342 0.95877 1.12027 1.16266 0.84542 0.81594 0.77437 1.90798 1.17322 1.80889 1.52389 1.48582 1.07471 1.06582 1.70307 1.22542 0.78070 0.99806 1.01538 1.23417 1.00395 0.93878 1.00967 1.21403 0.90280 0.96050 0.86396 0.89694 1.42864 1.53349 1.38810 1.03397 1.19045 1.15957 1.06938 0.93115 0.91309 1.25277 1.00231 0.99432 0.99684 1.69837 1.38733 1.33078 1.21505 0.85717 0.79197 0.78241 0.80380 1.20886 1.22557 1.18140 1.22014 0.97390 0.78261 0.99480 0.88250 1.21938 0.99723 1.02224 0.96820 0.89088 0.87863 0.91098 0.74654 0.92002 0.88656 0.88547 0.90254 0.79974 0.93482 0.94093 0.91045 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.95 71.24 0.71 -0.55 16 2 C -0.12 -2.36 6.37 -19.45 -0.12 -2.48 16 3 C 0.00 0.01 12.14 85.69 1.04 1.05 16 4 N -0.37 -8.63 12.04 -58.57 -0.71 -9.34 16 5 O 0.10 2.59 8.56 65.87 0.56 3.15 16 6 C -0.11 -2.70 7.06 24.39 0.17 -2.53 16 7 C 0.61 17.73 7.64 86.69 0.66 18.39 16 8 O -0.54 -17.05 14.15 -3.98 -0.06 -17.11 16 9 N -0.60 -17.07 3.06 -791.38 -2.42 -19.49 16 10 C 0.10 2.78 6.20 86.93 0.54 3.32 16 11 C -0.15 -4.13 6.78 32.06 0.22 -3.91 16 12 C 0.17 5.61 3.48 46.18 0.16 5.77 16 13 H 0.09 2.82 8.09 -2.39 -0.02 2.80 16 14 N -0.74 -31.60 4.35 -317.32 -1.38 -32.98 16 15 C -0.22 -11.63 10.44 84.04 0.88 -10.75 16 16 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 17 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 18 N -0.98 -61.10 13.97 21.65 0.30 -60.80 16 19 Si 0.94 44.73 27.74 68.60 1.90 46.63 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.26 -11.25 6.41 99.48 0.64 -10.61 16 23 C 0.13 3.92 3.43 45.34 0.16 4.08 16 24 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 25 C -0.15 -4.83 8.51 71.98 0.61 -4.21 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.41 6.73 -2.39 -0.02 1.39 16 29 H 0.24 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.26 6.26 -2.38 -0.01 2.25 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.36 15.67 3.54 -92.71 -0.33 15.34 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.04 1.46 6.09 -2.39 -0.01 1.45 16 37 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.06 1.98 6.88 -2.38 -0.02 1.97 16 Total: -1.00 -66.78 311.02 4.38 -62.39 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.69 Total: 21.99 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.49 Total: 5.55 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -4.21 Total: -122.61 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.51 Total: -13.95 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -66.78 4.38 -62.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987289071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.330 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds