Wall clock time and date at job start Tue Mar 31 2020 02:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35314 * 128.04309 * 2 1 4 4 O 1.34019 * 106.66958 * 180.23626 * 3 2 1 5 5 N 1.20906 * 111.84374 * 359.75054 * 4 3 2 6 6 C 1.30985 * 111.44396 * 359.97438 * 5 4 3 7 7 C 1.48328 * 126.94205 * 179.97438 * 6 5 4 8 8 O 1.21490 * 119.99939 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99702 * 0.03370 * 7 6 5 10 10 C 1.47425 * 125.64876 * 359.95811 * 9 7 6 11 11 C 1.54912 * 104.83476 * 155.90876 * 10 9 7 12 12 C 1.55154 * 101.58113 * 37.00492 * 11 10 9 13 13 H 1.09000 * 110.72506 * 82.86442 * 12 11 10 14 14 N 1.46503 * 110.72190 * 206.14084 * 12 11 10 15 15 C 1.36939 * 119.99594 * 268.52191 * 14 12 11 16 16 H 1.07999 * 120.00147 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99712 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99596 * 179.97438 * 17 15 14 19 19 Si 1.86789 * 120.00341 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47450 * 89.99425 * 19 17 15 21 21 H 1.48502 * 109.47465 * 209.99778 * 19 17 15 22 22 H 1.48509 * 109.46959 * 329.99901 * 19 17 15 23 23 C 1.47022 * 125.64845 * 179.97438 * 9 7 6 24 24 H 1.09002 * 109.88254 * 300.44242 * 23 9 7 25 25 C 1.53005 * 109.87895 * 61.45366 * 23 9 7 26 26 H 1.08998 * 109.47378 * 270.16655 * 1 2 3 27 27 H 1.09002 * 109.46771 * 30.16758 * 1 2 3 28 28 H 1.08992 * 109.47132 * 150.16366 * 1 2 3 29 29 H 1.07997 * 126.66181 * 359.94328 * 3 2 1 30 30 H 1.09000 * 110.36364 * 274.74167 * 10 9 7 31 31 H 1.09000 * 110.36962 * 37.06719 * 10 9 7 32 32 H 1.08991 * 111.00746 * 155.08349 * 11 10 9 33 33 H 1.09003 * 111.00242 * 278.93313 * 11 10 9 34 34 H 0.96993 * 120.00371 * 88.52539 * 14 12 11 35 35 H 0.96999 * 119.99859 * 179.97438 * 18 17 15 36 36 H 1.08991 * 109.47360 * 58.28396 * 25 23 9 37 37 H 1.09006 * 109.46753 * 178.28482 * 25 23 9 38 38 H 1.09004 * 109.46911 * 298.28130 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5772 -0.0053 5 7 3.5988 -0.6318 -0.0035 6 6 2.3837 -1.1206 0.0036 7 6 1.9991 -2.5532 0.0073 8 8 0.8254 -2.8670 0.0136 9 7 2.9517 -3.5066 0.0039 10 6 4.4064 -3.2677 -0.0044 11 6 5.0227 -4.5513 0.6058 12 6 4.0914 -5.6493 0.0274 13 1 4.3997 -5.9245 -0.9812 14 7 4.0689 -6.8238 0.9027 15 6 4.9538 -7.8484 0.6964 16 1 5.6684 -7.7904 -0.1113 17 6 4.9328 -8.9611 1.5261 18 7 5.7830 -9.9461 1.3275 19 14 3.6973 -9.0612 2.9234 20 1 2.4521 -9.7086 2.4378 21 1 4.2706 -9.8621 4.0347 22 1 3.3868 -7.6924 3.4085 23 6 2.7122 -4.9572 0.0074 24 1 2.1440 -5.2369 0.8945 25 6 1.9425 -5.3605 -1.2519 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8885 -0.5165 28 1 -0.3633 -0.8914 -0.5113 29 1 2.0560 2.1074 -0.0009 30 1 4.7615 -3.1247 -1.0250 31 1 4.6520 -2.4005 0.6087 32 1 6.0491 -4.6912 0.2669 33 1 4.9719 -4.5296 1.6944 34 1 3.4273 -6.8758 1.6282 35 1 5.7687 -10.7235 1.9074 36 1 2.5104 -5.0667 -2.1346 37 1 1.7952 -6.4405 -1.2574 38 1 0.9733 -4.8616 -1.2608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987314802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:25 Heat of formation + Delta-G solvation = 50.804824 kcal Electronic energy + Delta-G solvation = -22028.322458 eV Core-core repulsion = 18682.055357 eV Total energy + Delta-G solvation = -3346.267101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.28892 -40.06987 -37.66206 -34.87862 -34.38084 -32.77283 -31.53546 -31.00199 -29.65365 -28.37319 -25.40666 -25.02446 -22.76866 -22.27368 -21.81993 -20.39529 -19.57616 -17.99174 -17.66584 -17.62187 -16.77221 -16.12556 -15.19416 -14.68338 -14.49261 -14.07710 -13.81097 -13.56902 -13.46945 -13.41454 -12.90559 -12.75786 -12.66453 -12.31450 -12.07517 -11.87497 -11.53412 -11.26908 -11.26112 -10.89604 -10.66260 -10.49495 -10.36437 -10.14576 -9.99408 -9.69350 -9.64993 -8.99500 -8.58607 -7.36955 -5.83867 -3.21352 0.97722 1.45236 2.71949 2.95720 3.11249 3.34630 3.38036 3.42782 3.76771 4.29156 4.53555 4.58792 4.81018 4.93488 4.94752 5.16359 5.20080 5.38434 5.39600 5.42994 5.53818 5.56158 5.56972 5.68229 5.79234 5.94096 5.96437 6.01787 6.19493 6.30182 6.47643 6.50812 6.53470 6.76741 7.49085 7.76805 7.89827 8.08388 8.34497 9.10866 9.83427 10.01639 11.33866 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.004193 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.741836 B = 6675.806504 C = 7014.865899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.152 4.152 3 C -0.071 4.071 4 O 0.120 5.880 5 N -0.325 5.325 6 C -0.021 4.021 7 C 0.607 3.393 8 O -0.526 6.526 9 N -0.593 5.593 10 C 0.097 3.903 11 C -0.155 4.155 12 C 0.182 3.818 13 H 0.078 0.922 14 N -0.738 5.738 15 C -0.249 4.249 16 H 0.093 0.907 17 C 0.010 3.990 18 N -0.930 5.930 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.124 3.876 24 H 0.077 0.923 25 C -0.156 4.156 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.222 0.778 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 23.216 -3.651 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C -0.151 4.151 4 O 0.045 5.955 5 N -0.026 5.026 6 C -0.180 4.180 7 C 0.393 3.607 8 O -0.402 6.402 9 N -0.326 5.326 10 C -0.026 4.026 11 C -0.196 4.196 12 C 0.071 3.929 13 H 0.096 0.904 14 N -0.379 5.379 15 C -0.378 4.378 16 H 0.111 0.889 17 C -0.187 4.187 18 N -0.577 5.577 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.020 3.980 24 H 0.095 0.905 25 C -0.214 4.214 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.092 22.260 -3.740 23.660 hybrid contribution -1.463 0.145 1.125 1.851 sum -8.555 22.405 -2.615 24.125 Atomic orbital electron populations 1.20214 0.86607 1.03829 1.03202 1.21372 0.99117 0.90114 1.05048 1.25757 0.82535 1.01218 1.05619 1.84797 1.29442 1.15534 1.65726 1.74302 1.21515 0.91281 1.15516 1.23475 0.89430 0.97068 1.08035 1.16466 0.84758 0.81765 0.77705 1.90751 1.16988 1.81371 1.51067 1.48412 1.07190 1.06606 1.70413 1.22588 0.78805 0.99851 1.01372 1.23559 1.00784 0.93952 1.01332 1.21225 0.89756 0.86529 0.95424 0.90360 1.42694 1.41978 1.18478 1.34779 1.19038 1.10815 0.94665 1.13327 0.88939 1.24652 0.98615 0.96411 0.98973 1.69695 1.38537 1.08729 1.40729 0.86595 0.81729 0.77428 0.83044 1.20874 1.21596 1.20332 1.22059 0.98791 0.77814 0.99286 0.90479 1.22067 1.00438 1.02415 0.96483 0.90584 0.91097 0.89398 0.76174 0.91362 0.89879 0.89856 0.90792 0.80361 0.92910 0.92717 0.90769 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.15 -1.58 6.34 -104.11 -0.66 -2.24 16 3 C -0.07 -0.53 12.24 29.69 0.36 -0.16 16 4 O 0.12 1.20 11.18 17.24 0.19 1.40 16 5 N -0.32 -4.16 9.30 33.30 0.31 -3.85 16 6 C -0.02 -0.28 7.02 -82.52 -0.58 -0.86 16 7 C 0.61 9.84 7.67 -12.11 -0.09 9.74 16 8 O -0.53 -9.39 14.37 5.37 0.08 -9.32 16 9 N -0.59 -9.56 3.07 -163.93 -0.50 -10.06 16 10 C 0.10 1.42 6.18 -2.53 -0.02 1.40 16 11 C -0.16 -2.58 6.77 -24.58 -0.17 -2.75 16 12 C 0.18 3.42 3.14 -66.09 -0.21 3.21 16 13 H 0.08 1.48 7.81 -51.93 -0.41 1.08 16 14 N -0.74 -16.95 5.03 -51.65 -0.26 -17.21 16 15 C -0.25 -6.79 10.44 -15.06 -0.16 -6.95 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 18 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 19 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 23 C 0.12 2.14 3.21 -66.95 -0.21 1.92 16 24 H 0.08 1.43 7.72 -51.93 -0.40 1.03 16 25 C -0.16 -2.50 9.11 37.16 0.34 -2.17 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.96 6.89 -51.93 -0.36 0.60 16 29 H 0.22 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.18 6.24 -51.93 -0.32 0.86 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.36 8.35 5.42 -40.82 -0.22 8.13 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.04 6.88 -51.93 -0.36 0.68 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -32.36 315.37 -5.54 -37.90 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.04 Total: 6.14 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.13 Total: 0.99 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.32 Total: -59.01 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.27 Total: -7.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.36 -5.54 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987314802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.701 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds