Wall clock time and date at job start Tue Mar 31 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35315 * 126.66878 * 2 1 4 4 C 1.42266 * 103.92482 * 180.02562 * 3 2 1 5 5 C 1.48333 * 126.94001 * 179.88446 * 4 3 2 6 6 O 1.21488 * 120.00082 * 359.70954 * 5 4 3 7 7 N 1.34781 * 120.00274 * 179.70707 * 5 4 3 8 8 C 1.47425 * 125.64363 * 0.05502 * 7 5 4 9 9 C 1.54914 * 104.83075 * 204.08090 * 8 7 5 10 10 H 1.08993 * 111.03450 * 81.08248 * 9 8 7 11 11 N 1.46504 * 111.00258 * 204.92014 * 9 8 7 12 12 C 1.36943 * 119.99781 * 267.19686 * 11 9 8 13 13 H 1.08002 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99622 * 180.27904 * 12 11 9 15 15 N 1.31614 * 120.00467 * 359.72375 * 14 12 11 16 16 Si 1.86801 * 119.99700 * 179.72266 * 14 12 11 17 17 H 1.48501 * 109.46896 * 89.99850 * 16 14 12 18 18 H 1.48499 * 109.47039 * 210.00011 * 16 14 12 19 19 H 1.48501 * 109.47275 * 329.99811 * 16 14 12 20 20 C 1.55149 * 101.58116 * 322.99151 * 9 8 7 21 21 C 1.47014 * 125.65005 * 180.02562 * 7 5 4 22 22 H 1.09000 * 109.88255 * 59.57088 * 21 7 5 23 23 C 1.52999 * 109.88369 * 298.40047 * 21 7 5 24 24 N 1.30982 * 106.12357 * 359.62476 * 4 3 2 25 25 O 1.20910 * 111.43845 * 0.23948 * 24 4 3 26 26 H 1.08996 * 109.47437 * 180.32347 * 1 2 3 27 27 H 1.08999 * 109.47128 * 300.32714 * 1 2 3 28 28 H 1.09005 * 109.46696 * 60.32353 * 1 2 3 29 29 H 1.08004 * 128.03891 * 359.94533 * 3 2 1 30 30 H 1.09004 * 110.36839 * 85.24810 * 8 7 5 31 31 H 1.08995 * 110.37517 * 322.92309 * 8 7 5 32 32 H 0.97000 * 120.00410 * 87.20011 * 11 9 8 33 33 H 0.96995 * 120.00147 * 180.02562 * 15 14 12 34 34 H 1.09007 * 110.72112 * 153.86341 * 20 9 8 35 35 H 1.08999 * 110.72697 * 277.13701 * 20 9 8 36 36 H 1.08999 * 109.47575 * 302.19548 * 23 21 7 37 37 H 1.09008 * 109.46550 * 62.19505 * 23 21 7 38 38 H 1.09003 * 109.47111 * 182.18882 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0006 5 6 4.9075 1.2841 -0.0033 6 8 4.9009 2.4989 -0.0105 7 7 6.0785 0.6167 0.0024 8 6 6.2316 -0.8495 0.0103 9 6 7.6315 -1.0987 0.6253 10 1 7.5961 -1.0440 1.7133 11 7 8.1773 -2.3848 0.1844 12 6 7.9766 -3.5090 0.9402 13 1 7.4163 -3.4474 1.8615 14 6 8.4988 -4.7264 0.5254 15 7 9.1821 -4.8014 -0.5970 16 14 8.2317 -6.2585 1.5603 17 1 6.9791 -6.9322 1.1330 18 1 9.3785 -7.1844 1.3791 19 1 8.1250 -5.8768 2.9914 20 6 8.4458 0.0827 0.0351 21 6 7.4145 1.2303 0.0012 22 1 7.5332 1.8617 0.8817 23 6 7.6038 2.0622 -1.2688 24 7 3.4761 -0.7657 0.0073 25 8 2.3072 -1.0750 0.0078 26 1 -0.3634 -1.0276 0.0058 27 1 -0.3633 0.5189 0.8870 28 1 -0.3633 0.5088 -0.8929 29 1 2.0302 2.1272 -0.0008 30 1 6.1888 -1.2409 -1.0061 31 1 5.4591 -1.3085 0.6272 32 1 8.6809 -2.4401 -0.6427 33 1 9.5466 -5.6522 -0.8870 34 1 9.2835 0.3364 0.6848 35 1 8.7940 -0.1531 -0.9705 36 1 7.4642 1.4271 -2.1435 37 1 6.8725 2.8704 -1.2861 38 1 8.6097 2.4822 -1.2815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987958643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:33 Heat of formation + Delta-G solvation = 45.364522 kcal Electronic energy + Delta-G solvation = -21890.116480 eV Core-core repulsion = 18543.613470 eV Total energy + Delta-G solvation = -3346.503010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -45.07508 -39.91822 -37.45098 -34.25664 -34.16772 -33.54036 -31.48914 -31.28157 -28.43610 -27.98940 -25.53382 -24.97336 -23.73066 -22.69429 -21.14331 -20.30400 -18.73773 -17.84435 -17.40456 -17.18646 -16.68483 -15.99854 -15.20822 -14.53020 -14.17959 -14.00173 -13.85731 -13.63522 -13.53152 -13.30780 -13.08242 -12.76135 -12.52498 -12.35536 -12.17982 -11.76657 -11.44328 -11.14710 -10.99791 -10.70579 -10.66490 -10.43475 -10.29089 -10.07299 -9.99666 -9.75484 -9.49688 -9.01454 -8.43016 -7.08852 -5.84268 -3.15036 1.17336 1.61633 2.83037 3.03840 3.27173 3.41051 3.46495 3.47685 3.98895 4.35652 4.54385 4.81966 4.94251 5.02245 5.09926 5.11110 5.20033 5.21780 5.38102 5.47546 5.54395 5.57804 5.73162 5.75741 5.82315 5.83451 6.09129 6.15270 6.24793 6.33435 6.44530 6.52282 6.63894 6.84063 7.63148 7.66324 7.98080 8.23502 8.33202 9.45215 9.97896 10.33288 11.37798 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.005324 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.955627 B = 5258.387575 C = 6892.480295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.187 4.187 4 C -0.022 4.022 5 C 0.608 3.392 6 O -0.538 6.538 7 N -0.593 5.593 8 C 0.071 3.929 9 C 0.172 3.828 10 H 0.068 0.932 11 N -0.710 5.710 12 C -0.248 4.248 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.930 5.930 16 Si 0.908 3.092 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.138 4.138 21 C 0.139 3.861 22 H 0.076 0.924 23 C -0.161 4.161 24 N -0.315 5.315 25 O 0.122 5.878 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 12.236 0.210 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.181 4.181 5 C 0.394 3.606 6 O -0.415 6.415 7 N -0.325 5.325 8 C -0.054 4.054 9 C 0.060 3.940 10 H 0.086 0.914 11 N -0.349 5.349 12 C -0.379 4.379 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.578 5.578 16 Si 0.739 3.261 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.177 4.177 21 C 0.036 3.964 22 H 0.094 0.906 23 C -0.219 4.219 24 N -0.015 5.015 25 O 0.046 5.954 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.195 0.805 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.222 0.778 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.851 11.753 0.343 17.418 hybrid contribution -0.363 -0.247 0.143 0.461 sum -13.213 11.506 0.486 17.528 Atomic orbital electron populations 1.20342 0.83642 1.04854 1.04133 1.24493 0.96539 0.85710 1.03656 1.22357 0.89770 1.01347 1.07487 1.23471 0.96569 0.90138 1.07958 1.16516 0.80868 0.85746 0.77494 1.90737 1.86539 1.12343 1.51906 1.48501 1.04705 1.09443 1.69893 1.23730 1.02405 0.76855 1.02422 1.21305 0.89428 0.86236 0.97069 0.91426 1.42301 1.63084 1.02298 1.27227 1.19261 1.28871 0.86505 1.03232 0.90965 1.24754 1.00231 0.97852 0.97556 1.69656 1.40249 1.25200 1.22647 0.86178 0.77244 0.83130 0.79558 1.21542 1.21699 1.20650 1.23073 0.97179 0.94633 1.02777 1.21605 0.81183 0.95049 0.98598 0.90612 1.22139 1.02157 1.00434 0.97188 1.74461 0.96467 1.15496 1.15087 1.84859 1.11364 1.33481 1.65739 0.89659 0.89097 0.89108 0.80457 0.91218 0.89846 0.77832 0.93341 0.90081 0.90254 0.92454 0.91580 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.44 36.00 0.38 -0.02 16 2 C -0.04 -0.43 7.47 -35.35 -0.26 -0.70 16 3 C -0.19 -2.31 10.92 -39.08 -0.43 -2.74 16 4 C -0.02 -0.36 7.02 -82.53 -0.58 -0.94 16 5 C 0.61 10.73 7.67 -12.10 -0.09 10.64 16 6 O -0.54 -10.14 16.00 5.38 0.09 -10.05 16 7 N -0.59 -10.29 3.07 -163.94 -0.50 -10.79 16 8 C 0.07 1.36 5.87 -2.53 -0.01 1.34 16 9 C 0.17 3.40 3.71 -65.78 -0.24 3.15 16 10 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 11 N -0.71 -17.31 5.24 -51.35 -0.27 -17.58 16 12 C -0.25 -6.73 9.96 -15.06 -0.15 -6.88 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 15 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 16 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.14 -2.23 6.12 -24.90 -0.15 -2.38 16 21 C 0.14 2.15 3.46 -66.95 -0.23 1.92 16 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.16 -2.27 9.09 37.16 0.34 -1.93 16 24 N -0.31 -5.20 9.30 33.29 0.31 -4.90 16 25 O 0.12 1.68 11.18 17.25 0.19 1.88 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.18 1.81 8.06 -52.48 -0.42 1.38 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.67 6.23 -51.93 -0.32 1.34 16 32 H 0.39 9.98 7.76 -40.82 -0.32 9.66 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.08 1.30 7.71 -51.93 -0.40 0.90 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.00 6.90 -51.92 -0.36 0.64 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -31.90 322.00 -6.34 -38.24 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.17 Total: 6.91 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.54 Total: 1.17 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.26 Total: -60.06 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.28 Total: -8.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.90 -6.34 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987958643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.603 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.27 seconds