Wall clock time and date at job start Tue Mar 31 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41265 * 126.70137 * 2 1 4 4 C 1.36827 * 103.84132 * 180.12562 * 3 2 1 5 5 C 1.47516 * 126.93870 * 179.90525 * 4 3 2 6 6 O 1.21585 * 120.00176 * 359.71970 * 5 4 3 7 7 N 1.34774 * 119.99666 * 179.71006 * 5 4 3 8 8 C 1.47425 * 125.65138 * 0.02875 * 7 5 4 9 9 C 1.54908 * 104.92961 * 204.15299 * 8 7 5 10 10 H 1.08999 * 111.00647 * 204.85975 * 9 8 7 11 11 N 1.46505 * 111.00088 * 81.00982 * 9 8 7 12 12 C 1.36935 * 119.99890 * 86.45669 * 11 9 8 13 13 H 1.08001 * 120.00526 * 359.97438 * 12 11 9 14 14 C 1.38818 * 120.00071 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99708 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47074 * 60.00042 * 16 14 12 18 18 H 1.48498 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47245 * 300.00237 * 16 14 12 20 20 C 1.55154 * 101.58289 * 322.93718 * 9 8 7 21 21 C 1.47290 * 125.79121 * 180.02562 * 7 5 4 22 22 H 1.09001 * 109.98500 * 59.43402 * 21 7 5 23 23 C 1.52996 * 109.87458 * 298.35971 * 21 7 5 24 24 O 1.34632 * 106.11544 * 359.64958 * 4 3 2 25 25 N 1.20888 * 111.47099 * 0.23553 * 24 4 3 26 26 H 1.08994 * 109.47056 * 270.24839 * 1 2 3 27 27 H 1.08996 * 109.47536 * 30.25433 * 1 2 3 28 28 H 1.09004 * 109.47146 * 150.25313 * 1 2 3 29 29 H 1.07994 * 128.08050 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36696 * 85.25946 * 8 7 5 31 31 H 1.08995 * 110.36608 * 323.04783 * 8 7 5 32 32 H 0.97002 * 120.00176 * 266.45171 * 11 9 8 33 33 H 0.96992 * 119.99644 * 179.97438 * 15 14 12 34 34 H 1.09002 * 110.72290 * 153.86663 * 20 9 8 35 35 H 1.08994 * 110.71922 * 276.96131 * 20 9 8 36 36 H 1.08998 * 109.47192 * 302.15553 * 23 21 7 37 37 H 1.09005 * 109.47110 * 62.15753 * 23 21 7 38 38 H 1.09003 * 109.47228 * 182.15088 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0029 5 6 4.8870 1.3431 -0.0061 6 8 4.8827 2.5590 -0.0115 7 7 6.0565 0.6733 -0.0029 8 6 6.2067 -0.7933 0.0033 9 6 7.6058 -1.0485 0.6173 10 1 8.0080 -2.0067 0.2883 11 7 7.5586 -0.9756 2.0798 12 6 7.2311 -2.0865 2.8105 13 1 7.0072 -3.0163 2.3087 14 6 7.1868 -2.0176 4.1962 15 7 7.4601 -0.8846 4.8078 16 14 6.7394 -3.5327 5.1929 17 1 7.7207 -4.6132 4.9186 18 1 6.7636 -3.1984 6.6396 19 1 5.3792 -3.9913 4.8129 20 6 8.4245 0.1303 0.0279 21 6 7.3978 1.2819 -0.0050 22 1 7.5214 1.9139 0.8745 23 6 7.5894 2.1139 -1.2745 24 8 3.4540 -0.7359 0.0035 25 7 2.2848 -1.0432 0.0051 26 1 -0.3633 0.0045 1.0276 27 1 -0.3634 0.8876 -0.5177 28 1 -0.3634 -0.8923 -0.5099 29 1 2.0678 2.1747 0.0004 30 1 6.1618 -1.1835 -1.0135 31 1 5.4328 -1.2513 0.6191 32 1 7.7593 -0.1405 2.5305 33 1 7.4289 -0.8363 5.7760 34 1 9.2635 0.3800 0.6774 35 1 8.7739 -0.1072 -0.9768 36 1 7.4467 1.4798 -2.1495 37 1 6.8613 2.9250 -1.2908 38 1 8.5969 2.5299 -1.2877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988045365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:49 Heat of formation + Delta-G solvation = 42.876522 kcal Electronic energy + Delta-G solvation = -22328.260919 eV Core-core repulsion = 18981.650021 eV Total energy + Delta-G solvation = -3346.610898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.87103 -39.87530 -37.50509 -34.85177 -34.01480 -32.46193 -31.38148 -30.96809 -28.72477 -28.48148 -25.58000 -24.44737 -23.66185 -22.78391 -21.20492 -20.08143 -19.08270 -17.66831 -17.46687 -17.13256 -16.36044 -15.87807 -15.10352 -14.67172 -14.00657 -13.97355 -13.68283 -13.47410 -13.34093 -13.21700 -13.12221 -12.86532 -12.70257 -12.25925 -11.99446 -11.69669 -11.34189 -11.20322 -10.94236 -10.77050 -10.65878 -10.37823 -10.06634 -10.04762 -10.01544 -9.73245 -9.60424 -9.05429 -8.37653 -7.05757 -5.82958 -3.13472 0.96098 2.10135 2.72917 3.22123 3.33439 3.41551 3.46597 3.46948 4.09431 4.42583 4.53633 4.82321 5.06047 5.07899 5.13250 5.24489 5.31583 5.35070 5.48873 5.55006 5.56304 5.60799 5.64858 5.77296 5.82297 5.97070 6.00928 6.18172 6.21453 6.34562 6.40688 6.50940 6.63708 6.73549 7.64732 7.66601 8.05487 8.28777 8.34376 9.46386 10.00313 10.34787 11.38992 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.006813 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.012546 B = 4109.022025 C = 5693.720222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.004 3.996 3 C -0.164 4.164 4 C -0.063 4.063 5 C 0.615 3.385 6 O -0.527 6.527 7 N -0.582 5.582 8 C 0.062 3.938 9 C 0.170 3.830 10 H 0.075 0.925 11 N -0.712 5.712 12 C -0.247 4.247 13 H 0.073 0.927 14 C -0.008 4.008 15 N -0.929 5.929 16 Si 0.906 3.094 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.137 4.137 21 C 0.139 3.861 22 H 0.080 0.920 23 C -0.161 4.161 24 O 0.126 5.874 25 N -0.350 5.350 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.180 0.820 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 3.724 -13.106 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.153 4.153 3 C -0.186 4.186 4 C -0.129 4.129 5 C 0.401 3.599 6 O -0.406 6.406 7 N -0.313 5.313 8 C -0.064 4.064 9 C 0.057 3.943 10 H 0.092 0.908 11 N -0.352 5.352 12 C -0.378 4.378 13 H 0.091 0.909 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.737 3.263 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.176 4.176 21 C 0.037 3.963 22 H 0.098 0.902 23 C -0.219 4.219 24 O 0.054 5.946 25 N -0.051 5.051 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.198 0.802 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.784 2.925 -12.990 14.944 hybrid contribution -0.415 0.238 0.881 1.002 sum -7.199 3.163 -12.109 14.438 Atomic orbital electron populations 1.20163 0.85529 1.03763 1.03588 1.23598 0.99228 0.88475 1.04020 1.22765 0.89971 1.01511 1.04376 1.24241 0.97226 0.83955 1.07483 1.16112 0.80331 0.85565 0.77924 1.90812 1.85838 1.11683 1.52229 1.48367 1.04747 1.08888 1.69288 1.23653 1.03927 0.78471 1.00352 1.21336 0.90509 0.96224 0.86210 0.90758 1.42338 1.82228 1.12094 0.98500 1.19180 1.39793 0.90150 0.88697 0.90915 1.24758 1.02052 0.97030 0.96596 1.69653 1.54899 1.24567 1.08541 0.86285 0.78380 0.82316 0.79314 1.21085 1.21692 1.21171 1.23052 0.97656 0.95176 1.01687 1.21631 0.80915 0.95153 0.98639 0.90185 1.22151 1.02235 1.00510 0.96999 1.85121 1.20910 1.22173 1.66400 1.73736 0.89609 1.24521 1.17246 0.90002 0.89928 0.90444 0.80231 0.92053 0.89228 0.78008 0.93335 0.89488 0.90433 0.92649 0.91535 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.47 36.01 0.38 -0.30 16 2 C 0.00 0.06 7.31 -82.16 -0.60 -0.54 16 3 C -0.16 -2.35 10.92 -38.94 -0.43 -2.78 16 4 C -0.06 -1.06 7.06 -36.31 -0.26 -1.32 16 5 C 0.62 11.13 7.65 -12.48 -0.10 11.03 16 6 O -0.53 -10.31 15.99 5.29 0.08 -10.22 16 7 N -0.58 -10.01 3.07 -164.04 -0.50 -10.51 16 8 C 0.06 1.05 5.90 -2.53 -0.01 1.04 16 9 C 0.17 3.05 3.69 -65.78 -0.24 2.81 16 10 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 11 N -0.71 -16.79 5.27 -51.35 -0.27 -17.06 16 12 C -0.25 -6.57 9.98 -15.06 -0.15 -6.72 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 15 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 16 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.14 -1.99 6.04 -24.90 -0.15 -2.14 16 21 C 0.14 2.17 3.46 -66.81 -0.23 1.93 16 22 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 23 C -0.16 -2.09 9.10 37.16 0.34 -1.76 16 24 O 0.13 2.20 8.57 15.58 0.13 2.33 16 25 N -0.35 -5.80 12.04 33.52 0.40 -5.40 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.18 2.15 8.06 -52.49 -0.42 1.72 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.75 6.27 -51.93 -0.33 1.42 16 32 H 0.39 9.88 7.82 -40.82 -0.32 9.56 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.97 6.92 -51.93 -0.36 0.61 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -31.48 322.28 -6.33 -37.81 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.18 Total: 7.06 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.55 Total: 0.95 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.35 Total: -59.89 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.22 Total: -7.90 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.48 -6.33 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988045365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.688 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds