Wall clock time and date at job start Tue Mar 31 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41263 * 126.70533 * 2 1 4 4 C 1.36821 * 103.84577 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94344 * 180.02562 * 4 3 2 6 6 O 1.21590 * 120.00166 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00373 * 180.02562 * 5 4 3 8 8 C 1.47024 * 125.64517 * 0.04539 * 7 5 4 9 9 C 1.54320 * 107.27028 * 181.02369 * 8 7 5 10 10 H 1.09002 * 110.87350 * 263.75675 * 9 8 7 11 11 N 1.46506 * 110.72291 * 140.55254 * 9 8 7 12 12 C 1.36937 * 119.99708 * 91.47186 * 11 9 8 13 13 H 1.07996 * 120.00283 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99959 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99483 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00333 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46769 * 60.00182 * 16 14 12 18 18 H 1.48499 * 109.47227 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47358 * 300.00630 * 16 14 12 20 20 C 1.55158 * 102.94699 * 22.18931 * 9 8 7 21 21 C 1.47424 * 125.65114 * 179.97438 * 7 5 4 22 22 H 1.09000 * 110.36772 * 274.74621 * 21 7 5 23 23 C 1.52996 * 110.36802 * 37.06751 * 21 7 5 24 24 O 1.34638 * 106.11618 * 0.26790 * 4 3 2 25 25 N 1.20891 * 111.46461 * 359.52707 * 24 4 3 26 26 H 1.09010 * 109.47573 * 89.99173 * 1 2 3 27 27 H 1.08998 * 109.47433 * 209.99089 * 1 2 3 28 28 H 1.09003 * 109.47019 * 329.99737 * 1 2 3 29 29 H 1.07995 * 128.07506 * 0.05556 * 3 2 1 30 30 H 1.08994 * 109.88770 * 61.60031 * 8 7 5 31 31 H 1.09009 * 109.87952 * 300.43835 * 8 7 5 32 32 H 0.97000 * 120.00117 * 271.47592 * 11 9 8 33 33 H 0.97000 * 119.99481 * 179.97438 * 15 14 12 34 34 H 1.08995 * 111.00440 * 82.56786 * 20 9 8 35 35 H 1.08997 * 111.00666 * 206.42574 * 20 9 8 36 36 H 1.09000 * 109.47055 * 175.40698 * 23 21 7 37 37 H 1.08993 * 109.47495 * 295.41374 * 23 21 7 38 38 H 1.09000 * 109.46913 * 55.40973 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6120 0.6010 -0.0006 5 6 4.8869 1.3430 -0.0003 6 8 4.8828 2.5588 0.0010 7 7 6.0565 0.6732 -0.0015 8 6 6.2063 -0.7894 -0.0041 9 6 7.7186 -1.0952 0.0217 10 1 8.0953 -1.2771 -0.9849 11 7 8.0017 -2.2381 0.8934 12 6 8.0308 -3.5048 0.3738 13 1 7.8454 -3.6612 -0.6786 14 6 8.2995 -4.5877 1.1996 15 7 8.5258 -4.3970 2.4821 16 14 8.3398 -6.3155 0.4908 17 1 9.3878 -6.3957 -0.5583 18 1 8.6454 -7.2869 1.5716 19 1 7.0180 -6.6375 -0.1043 20 6 8.3265 0.2063 0.6083 21 6 7.3975 1.2857 -0.0020 22 1 7.7068 1.5209 -1.0203 23 6 7.4069 2.5473 0.8634 24 8 3.4539 -0.7360 -0.0069 25 7 2.2847 -1.0433 -0.0008 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 2.0678 2.1746 0.0008 30 1 5.7591 -1.2064 -0.9064 31 1 5.7274 -1.2126 0.8790 32 1 8.1685 -2.0977 1.8386 33 1 8.7132 -5.1538 3.0592 34 1 8.2670 0.2093 1.6966 35 1 9.3551 0.3422 0.2744 36 1 8.4213 2.9422 0.9191 37 1 6.7493 3.2959 0.4216 38 1 7.0567 2.3027 1.8662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988045378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:00 Heat of formation + Delta-G solvation = 24.882738 kcal Electronic energy + Delta-G solvation = -21981.582074 eV Core-core repulsion = 18634.190907 eV Total energy + Delta-G solvation = -3347.391167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -46.06678 -41.31148 -38.88221 -36.10461 -35.82930 -33.79240 -33.24373 -32.18207 -30.13573 -29.62237 -26.77907 -26.06568 -25.20013 -23.92573 -22.38119 -21.81572 -20.32244 -19.25825 -18.89771 -18.53087 -17.73902 -17.20563 -16.78791 -16.26529 -15.56272 -15.37622 -15.08260 -14.99066 -14.43486 -14.30744 -14.22262 -14.13010 -13.65881 -13.56148 -13.30740 -13.14656 -12.92522 -12.79722 -12.40975 -12.35959 -12.18264 -12.12363 -11.72752 -11.58677 -11.15856 -11.14087 -10.92798 -10.86792 -9.78768 -9.07692 -7.94324 -5.24256 -0.32197 0.99218 1.44968 1.50445 1.52503 1.57919 1.82483 2.01513 2.57355 3.08878 3.18224 3.36911 3.62324 3.80146 3.86407 3.88883 3.97576 4.19818 4.28567 4.30874 4.47936 4.50991 4.67814 4.72377 4.74111 4.78701 4.80756 4.87170 5.10556 5.14660 5.17665 5.21730 5.32239 5.48847 5.55000 6.21884 6.27473 6.71482 7.03614 7.34407 8.05530 8.28978 9.28428 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.005418 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.907775 B = 5166.420993 C = 6771.598423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.146 4.146 4 C -0.096 4.096 5 C 0.615 3.385 6 O -0.535 6.535 7 N -0.595 5.595 8 C 0.085 3.915 9 C 0.166 3.834 10 H 0.079 0.921 11 N -0.723 5.723 12 C -0.245 4.245 13 H 0.081 0.919 14 C -0.068 4.068 15 N -0.967 5.967 16 Si 0.968 3.032 17 H -0.275 1.275 18 H -0.298 1.298 19 H -0.281 1.281 20 C -0.125 4.125 21 C 0.137 3.863 22 H 0.100 0.900 23 C -0.154 4.154 24 O 0.099 5.901 25 N -0.379 5.379 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.209 0.791 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 14.218 -6.330 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.144 4.144 3 C -0.167 4.167 4 C -0.162 4.162 5 C 0.401 3.599 6 O -0.414 6.414 7 N -0.327 5.327 8 C -0.041 4.041 9 C 0.056 3.944 10 H 0.097 0.903 11 N -0.362 5.362 12 C -0.376 4.376 13 H 0.099 0.901 14 C -0.261 4.261 15 N -0.617 5.617 16 Si 0.797 3.203 17 H -0.200 1.200 18 H -0.224 1.224 19 H -0.208 1.208 20 C -0.164 4.164 21 C 0.035 3.965 22 H 0.118 0.882 23 C -0.211 4.211 24 O 0.031 5.969 25 N -0.084 5.084 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.209 0.791 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.790 13.416 -6.444 18.383 hybrid contribution 0.023 -0.622 0.375 0.727 sum -10.767 12.794 -6.069 17.789 Atomic orbital electron populations 1.20424 0.82243 1.05399 1.05093 1.24386 1.01133 0.87502 1.01426 1.23216 0.88819 1.02773 1.01936 1.24402 0.97884 0.84175 1.09703 1.16260 0.80600 0.85517 0.77508 1.90775 1.85956 1.11847 1.52836 1.48575 1.05820 1.08493 1.69765 1.23104 1.01706 0.78009 1.01269 1.21394 0.90311 0.87312 0.95408 0.90319 1.42510 1.83588 1.01993 1.08082 1.19617 1.39203 0.84753 0.94049 0.90140 1.25502 1.03077 1.01605 0.95928 1.69801 1.56394 1.30841 1.04682 0.85296 0.78036 0.80037 0.76903 1.20042 1.22448 1.20767 1.23122 0.99822 0.92690 1.00761 1.22162 0.79555 0.93777 1.00999 0.88229 1.22073 1.03645 0.96657 0.98762 1.85120 1.21564 1.22636 1.67625 1.73796 0.89722 1.26019 1.18875 0.88209 0.90245 0.87107 0.77425 0.91591 0.92827 0.79149 0.94033 0.91369 0.87691 0.89305 0.90970 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.47 71.23 0.75 -0.28 16 2 C 0.01 0.32 7.31 43.55 0.32 0.64 16 3 C -0.15 -3.44 10.91 22.68 0.25 -3.19 16 4 C -0.10 -2.87 7.08 24.38 0.17 -2.70 16 5 C 0.61 19.21 7.63 86.69 0.66 19.87 16 6 O -0.53 -17.42 14.63 -4.00 -0.06 -17.48 16 7 N -0.59 -18.25 3.24 -791.86 -2.57 -20.81 16 8 C 0.09 2.96 5.33 86.73 0.46 3.43 16 9 C 0.17 5.99 3.61 46.18 0.17 6.15 16 10 H 0.08 2.73 8.09 -2.39 -0.02 2.71 16 11 N -0.72 -34.28 5.15 -317.32 -1.63 -35.92 16 12 C -0.24 -12.94 9.96 84.03 0.84 -12.10 16 13 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 14 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 15 N -0.97 -57.84 13.06 21.65 0.28 -57.56 16 16 Si 0.97 45.19 29.55 68.60 2.03 47.21 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 C -0.13 -3.59 6.13 32.00 0.20 -3.39 16 21 C 0.14 3.56 3.77 45.47 0.17 3.73 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 C -0.15 -3.72 8.59 71.98 0.62 -3.10 16 24 O 0.10 3.33 9.02 65.86 0.59 3.93 16 25 N -0.38 -11.98 12.04 -48.86 -0.59 -12.57 16 26 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.07 2.28 7.83 -2.39 -0.02 2.26 16 31 H 0.05 2.16 7.62 -2.38 -0.02 2.14 16 32 H 0.38 19.36 7.76 -92.71 -0.72 18.64 16 33 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.07 2.12 7.93 -2.39 -0.02 2.10 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.91 6.09 -2.39 -0.01 1.89 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.16 320.82 3.48 -62.68 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.36 Total: 24.81 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.06 Total: 5.71 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -4.51 Total: -126.86 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.54 Total: -13.55 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.16 3.48 -62.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988045378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.558 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds