Wall clock time and date at job start Tue Mar 31 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41258 * 126.70560 * 2 1 4 4 C 1.36820 * 103.84838 * 179.85904 * 3 2 1 5 5 C 1.47509 * 126.94695 * 180.12635 * 4 3 2 6 6 O 1.21580 * 120.00032 * 0.30426 * 5 4 3 7 7 N 1.34779 * 120.00029 * 180.30196 * 5 4 3 8 8 C 1.47013 * 125.64890 * 359.69775 * 7 5 4 9 9 C 1.54343 * 107.26848 * 178.84550 * 8 7 5 10 10 H 1.09007 * 110.66264 * 96.51887 * 9 8 7 11 11 N 1.46496 * 110.85322 * 219.67004 * 9 8 7 12 12 C 1.36936 * 120.00292 * 268.69688 * 11 9 8 13 13 H 1.08003 * 119.99704 * 359.97438 * 12 11 9 14 14 C 1.38810 * 120.00097 * 180.02562 * 12 11 9 15 15 N 1.31615 * 120.00157 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99715 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47174 * 89.99964 * 16 14 12 18 18 H 1.48501 * 109.46864 * 209.99617 * 16 14 12 19 19 H 1.48502 * 109.47391 * 329.99364 * 16 14 12 20 20 C 1.55154 * 103.01774 * 338.14295 * 9 8 7 21 21 C 1.47432 * 125.64715 * 179.97438 * 7 5 4 22 22 H 1.09003 * 110.36118 * 85.25630 * 21 7 5 23 23 C 1.52999 * 110.36836 * 322.93612 * 21 7 5 24 24 O 1.34642 * 106.11193 * 0.40245 * 4 3 2 25 25 N 1.20886 * 111.46467 * 359.72816 * 24 4 3 26 26 H 1.09001 * 109.46953 * 269.70598 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.70196 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.70826 * 1 2 3 29 29 H 1.08006 * 128.07693 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.88461 * 298.39309 * 8 7 5 31 31 H 1.08997 * 109.88558 * 59.55485 * 8 7 5 32 32 H 0.96998 * 119.99738 * 88.68988 * 11 9 8 33 33 H 0.96998 * 120.00127 * 180.02562 * 15 14 12 34 34 H 1.09004 * 111.00275 * 277.23270 * 20 9 8 35 35 H 1.08995 * 111.00774 * 153.38054 * 20 9 8 36 36 H 1.09005 * 109.47528 * 61.44786 * 23 21 7 37 37 H 1.08995 * 109.47074 * 181.45042 * 23 21 7 38 38 H 1.09006 * 109.47207 * 301.45473 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6010 0.0033 5 6 4.8871 1.3429 0.0073 6 8 4.8829 2.5587 0.0136 7 7 6.0566 0.6731 0.0041 8 6 6.2063 -0.7894 0.0029 9 6 7.7188 -1.0951 -0.0306 10 1 8.0956 -1.2832 0.9748 11 7 8.0016 -2.2326 -0.9094 12 6 8.0307 -3.5025 -0.3978 13 1 7.8457 -3.6653 0.6537 14 6 8.2992 -4.5802 -1.2304 15 7 8.5252 -4.3816 -2.5117 16 14 8.3397 -6.3123 -0.5323 17 1 6.9821 -6.9092 -0.6100 18 1 9.2901 -7.1403 -1.3174 19 1 8.7791 -6.2645 0.8854 20 6 8.3264 0.2100 -0.6092 21 6 7.3976 1.2856 0.0069 22 1 7.7075 1.5152 1.0264 23 6 7.4064 2.5520 -0.8516 24 8 3.4540 -0.7361 -0.0042 25 7 2.2848 -1.0432 -0.0059 26 1 -0.3633 -0.0053 1.0277 27 1 -0.3634 0.8926 -0.5092 28 1 -0.3633 -0.8874 -0.5184 29 1 2.0679 2.1747 0.0004 30 1 5.7614 -1.2084 0.9055 31 1 5.7253 -1.2107 -0.8798 32 1 8.1680 -2.0862 -1.8537 33 1 8.7125 -5.1348 -3.0936 34 1 8.2666 0.2198 -1.6976 35 1 9.3551 0.3439 -0.2748 36 1 6.7070 3.2775 -0.4362 37 1 8.4096 2.9782 -0.8601 38 1 7.1088 2.3026 -1.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988045384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:06 Heat of formation + Delta-G solvation = 25.105052 kcal Electronic energy + Delta-G solvation = -21981.709779 eV Core-core repulsion = 18634.328252 eV Total energy + Delta-G solvation = -3347.381527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.06764 -41.31645 -38.88423 -36.10621 -35.82992 -33.79719 -33.24423 -32.18261 -30.13644 -29.62205 -26.78372 -26.06684 -25.20165 -23.92551 -22.38461 -21.81503 -20.32657 -19.26083 -18.89873 -18.53038 -17.73739 -17.20761 -16.78994 -16.26716 -15.56128 -15.38826 -15.09052 -14.99144 -14.43921 -14.30694 -14.22333 -14.12958 -13.65702 -13.55413 -13.30566 -13.15611 -12.92542 -12.84015 -12.40343 -12.33833 -12.17610 -12.11109 -11.73045 -11.58593 -11.15034 -11.13194 -10.93101 -10.86699 -9.78828 -9.07947 -7.94686 -5.24606 -0.32182 0.99284 1.44969 1.50221 1.51269 1.58902 1.82437 2.01375 2.57032 3.08899 3.18219 3.36771 3.62441 3.80153 3.86063 3.88817 3.97565 4.19636 4.28789 4.30883 4.48025 4.51106 4.67862 4.72471 4.74302 4.78645 4.80663 4.87301 5.10367 5.14793 5.17690 5.21622 5.32421 5.49953 5.55129 6.21806 6.27336 6.71537 7.03685 7.34196 8.05281 8.28657 9.28308 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.005418 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.935839 B = 5166.294448 C = 6771.206969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.013 3.987 3 C -0.145 4.145 4 C -0.096 4.096 5 C 0.615 3.385 6 O -0.535 6.535 7 N -0.594 5.594 8 C 0.085 3.915 9 C 0.166 3.834 10 H 0.078 0.922 11 N -0.723 5.723 12 C -0.243 4.243 13 H 0.081 0.919 14 C -0.069 4.069 15 N -0.967 5.967 16 Si 0.968 3.032 17 H -0.292 1.292 18 H -0.297 1.297 19 H -0.266 1.266 20 C -0.125 4.125 21 C 0.137 3.863 22 H 0.100 0.900 23 C -0.157 4.157 24 O 0.099 5.901 25 N -0.379 5.379 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.209 0.791 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 14.230 6.470 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.145 4.145 3 C -0.167 4.167 4 C -0.162 4.162 5 C 0.401 3.599 6 O -0.414 6.414 7 N -0.326 5.326 8 C -0.041 4.041 9 C 0.056 3.944 10 H 0.096 0.904 11 N -0.362 5.362 12 C -0.375 4.375 13 H 0.099 0.901 14 C -0.261 4.261 15 N -0.617 5.617 16 Si 0.797 3.203 17 H -0.219 1.219 18 H -0.224 1.224 19 H -0.191 1.191 20 C -0.164 4.164 21 C 0.035 3.965 22 H 0.118 0.882 23 C -0.214 4.214 24 O 0.031 5.969 25 N -0.084 5.084 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.208 0.792 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.787 13.430 6.591 18.443 hybrid contribution 0.018 -0.631 -0.403 0.749 sum -10.769 12.798 6.188 17.834 Atomic orbital electron populations 1.20425 0.82243 1.05404 1.05084 1.24386 1.01133 0.87502 1.01432 1.23218 0.88820 1.02777 1.01926 1.24406 0.97886 0.84175 1.09710 1.16258 0.80594 0.85506 0.77500 1.90762 1.85917 1.11857 1.52861 1.48564 1.05829 1.08489 1.69755 1.23108 1.01712 0.78025 1.01284 1.21389 0.90324 0.87386 0.95321 0.90363 1.42513 1.83559 1.02009 1.08083 1.19654 1.39040 0.84690 0.94097 0.90107 1.25498 1.03107 1.01617 0.95916 1.69802 1.56481 1.30909 1.04553 0.85229 0.76838 0.80354 0.77884 1.21918 1.22351 1.19075 1.23113 0.99830 0.92682 1.00753 1.22153 0.79547 0.93776 1.01002 0.88237 1.22113 1.03842 0.96684 0.98803 1.85120 1.21558 1.22640 1.67623 1.73792 0.89724 1.26024 1.18868 0.88216 0.87101 0.90251 0.77420 0.91547 0.92829 0.79153 0.94033 0.91381 0.87690 0.90784 0.89298 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.47 71.24 0.75 -0.28 16 2 C 0.01 0.32 7.31 43.56 0.32 0.64 16 3 C -0.15 -3.43 10.91 22.68 0.25 -3.19 16 4 C -0.10 -2.87 7.08 24.38 0.17 -2.70 16 5 C 0.62 19.18 7.63 86.69 0.66 19.84 16 6 O -0.53 -17.38 14.57 -3.97 -0.06 -17.43 16 7 N -0.59 -18.22 3.24 -791.92 -2.57 -20.79 16 8 C 0.08 2.95 5.34 86.74 0.46 3.41 16 9 C 0.17 5.99 3.61 46.19 0.17 6.15 16 10 H 0.08 2.71 8.09 -2.38 -0.02 2.69 16 11 N -0.72 -34.26 5.15 -317.30 -1.64 -35.90 16 12 C -0.24 -12.85 9.96 84.03 0.84 -12.02 16 13 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 14 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 15 N -0.97 -57.87 13.06 21.65 0.28 -57.59 16 16 Si 0.97 45.21 29.55 68.60 2.03 47.23 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 C -0.13 -3.59 6.13 31.98 0.20 -3.39 16 21 C 0.14 3.57 3.76 45.46 0.17 3.74 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 C -0.16 -3.79 8.71 71.98 0.63 -3.16 16 24 O 0.10 3.33 9.02 65.83 0.59 3.93 16 25 N -0.38 -11.96 12.04 -48.86 -0.59 -12.55 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.07 2.29 7.85 -2.39 -0.02 2.27 16 31 H 0.05 2.16 7.60 -2.39 -0.02 2.14 16 32 H 0.38 19.35 7.76 -92.71 -0.72 18.63 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.07 2.12 7.92 -2.38 -0.02 2.10 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.07 1.97 5.89 -2.38 -0.01 1.96 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -66.18 320.67 3.49 -62.70 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.36 Total: 24.73 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.07 Total: 5.68 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -4.51 Total: -126.83 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.54 Total: -13.51 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.18 3.49 -62.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988045384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.801 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds