Wall clock time and date at job start Tue Mar 31 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29937 * 125.37481 * 2 1 4 4 C 1.36065 * 108.47462 * 180.02562 * 3 2 1 5 5 C 1.47421 * 126.45132 * 180.02562 * 4 3 2 6 6 O 1.21612 * 120.00540 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99967 * 0.02629 * 5 4 3 8 8 C 1.47425 * 125.64363 * 0.05232 * 7 5 4 9 9 C 1.54914 * 104.83075 * 204.08090 * 8 7 5 10 10 H 1.08993 * 111.03450 * 81.08248 * 9 8 7 11 11 N 1.46504 * 111.00258 * 204.92014 * 9 8 7 12 12 C 1.36943 * 119.99781 * 267.19686 * 11 9 8 13 13 H 1.08002 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99622 * 180.27904 * 12 11 9 15 15 N 1.31622 * 119.99400 * 179.72313 * 14 12 11 16 16 Si 1.86800 * 120.00144 * 359.72086 * 14 12 11 17 17 H 1.48506 * 109.46719 * 90.00417 * 16 14 12 18 18 H 1.48501 * 109.46793 * 210.00071 * 16 14 12 19 19 H 1.48489 * 109.47333 * 330.00315 * 16 14 12 20 20 C 1.55149 * 101.58116 * 322.99151 * 9 8 7 21 21 C 1.47014 * 125.65005 * 179.97438 * 7 5 4 22 22 H 1.09000 * 109.88255 * 59.57088 * 21 7 5 23 23 C 1.52999 * 109.88369 * 298.40047 * 21 7 5 24 24 C 1.36086 * 107.10374 * 0.26699 * 4 3 2 25 25 O 1.34047 * 125.38018 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47119 * 89.99578 * 1 2 3 27 27 H 1.09000 * 109.46556 * 209.99581 * 1 2 3 28 28 H 1.09001 * 109.46849 * 329.99666 * 1 2 3 29 29 H 1.09004 * 110.36839 * 85.24810 * 8 7 5 30 30 H 1.08995 * 110.37517 * 322.92309 * 8 7 5 31 31 H 0.97000 * 120.00410 * 87.20011 * 11 9 8 32 32 H 0.97009 * 119.99492 * 179.97438 * 15 14 12 33 33 H 1.09007 * 110.72112 * 153.86341 * 20 9 8 34 34 H 1.08999 * 110.72697 * 277.13701 * 20 9 8 35 35 H 1.08999 * 109.47575 * 302.19548 * 23 21 7 36 36 H 1.09008 * 109.46550 * 62.19505 * 23 21 7 37 37 H 1.09003 * 109.47111 * 182.18882 * 23 21 7 38 38 H 1.08007 * 126.52997 * 179.73570 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5439 -0.0003 6 8 5.8605 1.0620 -0.0013 7 7 4.5879 2.8826 0.0012 8 6 3.2984 3.5972 0.0037 9 6 3.6135 4.9859 -0.6064 10 1 3.6441 4.9371 -1.6948 11 7 2.6459 5.9893 -0.1555 12 6 1.5287 6.2480 -0.9040 13 1 1.3612 5.7126 -1.8269 14 6 0.6149 7.2029 -0.4797 15 7 -0.4561 7.4554 -1.2020 16 14 0.9051 8.1293 1.1162 17 1 1.6870 9.3609 0.8383 18 1 -0.4010 8.4976 1.7192 19 1 1.6600 7.2660 2.0594 20 6 5.0225 5.2703 -0.0225 21 6 5.6753 3.8720 0.0023 22 1 6.2988 3.7385 -0.8818 23 6 6.5208 3.7147 1.2677 24 6 3.5660 -0.6969 -0.0070 25 8 2.2832 -1.0929 -0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 2.9270 3.7061 1.0227 30 1 2.5705 3.0688 -0.6117 31 1 2.7966 6.4704 0.6732 32 1 -1.0949 8.1224 -0.9053 33 1 5.5802 5.9450 -0.6721 34 1 4.9472 5.6782 0.9855 35 1 5.8856 3.8304 2.1459 36 1 6.9785 2.7254 1.2781 37 1 7.3008 4.4760 1.2804 38 1 4.4362 -1.3367 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988663587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:07 Heat of formation + Delta-G solvation = -13.519037 kcal Electronic energy + Delta-G solvation = -22050.731125 eV Core-core repulsion = 18701.674732 eV Total energy + Delta-G solvation = -3349.056393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46199 -41.17582 -38.85011 -36.13585 -36.00030 -33.53634 -33.32866 -32.48821 -30.53846 -28.81325 -26.76667 -25.95765 -25.08034 -22.97581 -22.31257 -21.75830 -20.39708 -19.69331 -18.59119 -18.02397 -17.74789 -17.33431 -16.66179 -16.23574 -15.60332 -15.34352 -15.07956 -14.91473 -14.78816 -14.42483 -14.28665 -13.93319 -13.82300 -13.62422 -13.29763 -13.23019 -12.96800 -12.86571 -12.48657 -12.35920 -12.12053 -12.00776 -11.84882 -11.59196 -11.49007 -11.27095 -10.94190 -10.11652 -9.68580 -9.33078 -7.99998 -5.35455 0.04351 0.94753 1.41531 1.44377 1.51171 1.57396 1.86125 2.17190 2.50696 2.85341 3.28399 3.32663 3.68126 3.78451 3.82804 3.88718 4.06551 4.28616 4.40337 4.42048 4.42879 4.52755 4.64202 4.69939 4.71062 4.74730 4.83290 4.97336 5.06238 5.13394 5.18805 5.25806 5.32143 5.44666 5.78367 6.22844 6.35474 6.49410 6.97807 7.08003 7.80824 8.01550 9.21023 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.005897 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.806381 B = 4747.315930 C = 6245.459694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.198 3.802 3 N -0.489 5.489 4 C -0.104 4.104 5 C 0.609 3.391 6 O -0.565 6.565 7 N -0.596 5.596 8 C 0.098 3.902 9 C 0.166 3.834 10 H 0.062 0.938 11 N -0.735 5.735 12 C -0.232 4.232 13 H 0.057 0.943 14 C -0.057 4.057 15 N -0.981 5.981 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.252 1.252 20 C -0.127 4.127 21 C 0.134 3.866 22 H 0.082 0.918 23 C -0.152 4.152 24 C 0.028 3.972 25 O -0.193 6.193 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.369 0.631 32 H 0.258 0.742 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -15.414 5.366 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.220 5.220 4 C -0.222 4.222 5 C 0.398 3.602 6 O -0.446 6.446 7 N -0.327 5.327 8 C -0.027 4.027 9 C 0.056 3.944 10 H 0.080 0.920 11 N -0.377 5.377 12 C -0.363 4.363 13 H 0.075 0.925 14 C -0.249 4.249 15 N -0.631 5.631 16 Si 0.780 3.220 17 H -0.203 1.203 18 H -0.225 1.225 19 H -0.177 1.177 20 C -0.165 4.165 21 C 0.031 3.969 22 H 0.100 0.900 23 C -0.209 4.209 24 C -0.046 4.046 25 O -0.080 6.080 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 8.858 -15.101 5.189 18.261 hybrid contribution -0.111 0.124 0.655 0.676 sum 8.747 -14.977 5.845 18.302 Atomic orbital electron populations 1.20571 0.78172 1.06549 1.06276 1.27249 0.98002 0.77726 0.98145 1.71005 1.01219 1.30845 1.18928 1.21779 0.91982 0.93948 1.14516 1.16627 0.86469 0.80722 0.76359 1.90743 1.24993 1.75132 1.53764 1.48406 1.09671 1.04336 1.70271 1.23130 0.84581 0.94052 1.00971 1.21442 0.88755 0.87013 0.97200 0.91960 1.42534 1.23829 1.45304 1.26041 1.18997 0.97813 1.16530 1.02986 0.92470 1.25448 0.96628 1.00721 1.02112 1.69886 1.14060 1.37759 1.41371 0.85450 0.76937 0.79198 0.80412 1.20250 1.22463 1.17677 1.23024 0.95186 0.95258 1.03047 1.21734 0.88334 0.86984 0.99812 0.89997 1.22061 0.99974 1.02947 0.95961 1.25741 0.85616 0.94796 0.98427 1.84415 1.16551 1.37803 1.69197 0.87310 0.86276 0.88209 0.92902 0.90281 0.79669 0.93324 0.87984 0.89682 0.93008 0.92719 0.89026 0.72357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.20 4.81 8.30 88.39 0.73 5.55 16 3 N -0.49 -15.48 8.44 -293.04 -2.47 -17.96 16 4 C -0.10 -3.17 6.81 40.41 0.28 -2.89 16 5 C 0.61 20.48 7.64 86.66 0.66 21.14 16 6 O -0.57 -19.91 15.93 -4.07 -0.06 -19.97 16 7 N -0.60 -19.70 3.06 -791.88 -2.43 -22.12 16 8 C 0.10 3.61 5.83 86.86 0.51 4.12 16 9 C 0.17 6.21 3.71 46.38 0.17 6.38 16 10 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 11 N -0.73 -33.00 5.05 -316.38 -1.60 -34.60 16 12 C -0.23 -12.87 10.44 84.03 0.88 -11.99 16 13 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 14 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 15 N -0.98 -61.55 13.97 21.65 0.30 -61.25 16 16 Si 0.95 44.13 27.73 68.60 1.90 46.03 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.25 -10.52 6.52 99.48 0.65 -9.88 16 20 C -0.13 -3.58 6.13 31.78 0.19 -3.38 16 21 C 0.13 3.75 3.46 45.35 0.16 3.91 16 22 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 23 C -0.15 -3.71 9.09 71.98 0.65 -3.06 16 24 C 0.03 0.65 11.94 67.32 0.80 1.45 16 25 O -0.19 -4.26 10.73 0.40 0.00 -4.26 16 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.08 3.21 6.15 -2.39 -0.01 3.19 16 31 H 0.37 15.75 5.63 -92.71 -0.52 15.23 16 32 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 33 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.08 2.28 7.71 -2.39 -0.02 2.26 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.49 6.90 -2.38 -0.02 1.47 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.26 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -72.71 319.08 2.40 -70.31 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.50 Total: 25.57 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.25 Total: 18.24 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -6.19 Total: -135.93 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -72.71 2.40 -70.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988663587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.790 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds