Wall clock time and date at job start Tue Mar 31 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30010 * 127.33851 * 2 1 4 4 O 1.20660 * 112.30109 * 179.97438 * 3 2 1 5 5 C 1.33489 * 113.15785 * 359.71392 * 4 3 2 6 6 C 1.37365 * 106.34181 * 0.45450 * 5 4 3 7 7 C 1.47390 * 128.56588 * 179.85608 * 6 5 4 8 8 O 1.21603 * 120.00411 * 173.52252 * 7 6 5 9 9 N 1.34784 * 119.99907 * 353.52657 * 7 6 5 10 10 C 1.47422 * 125.65059 * 354.39329 * 9 7 6 11 11 C 1.54907 * 104.83447 * 204.15515 * 10 9 7 12 12 H 1.09000 * 111.00112 * 204.91921 * 11 10 9 13 13 N 1.46499 * 111.04072 * 81.08145 * 11 10 9 14 14 C 1.36931 * 120.00220 * 89.60066 * 13 11 10 15 15 H 1.07993 * 119.99908 * 0.02562 * 14 13 11 16 16 C 1.38809 * 119.99831 * 179.97438 * 14 13 11 17 17 N 1.31625 * 120.00238 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00121 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46958 * 60.00015 * 18 16 14 20 20 H 1.48501 * 109.47574 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47072 * 300.00658 * 18 16 14 22 22 C 1.55153 * 101.58141 * 322.98826 * 11 10 9 23 23 C 1.47028 * 125.64768 * 174.42294 * 9 7 6 24 24 H 1.09003 * 110.00797 * 59.42870 * 23 9 7 25 25 C 1.52998 * 109.87895 * 298.33512 * 23 9 7 26 26 H 1.09001 * 109.46998 * 270.04212 * 1 2 3 27 27 H 1.09002 * 109.47172 * 30.04298 * 1 2 3 28 28 H 1.09001 * 109.47586 * 150.04503 * 1 2 3 29 29 H 1.07998 * 126.82858 * 180.30657 * 5 4 3 30 30 H 1.09001 * 110.36406 * 85.30926 * 10 9 7 31 31 H 1.09008 * 110.36430 * 322.99504 * 10 9 7 32 32 H 0.97006 * 119.99587 * 269.60648 * 13 11 10 33 33 H 0.96999 * 119.99986 * 179.97438 * 17 16 14 34 34 H 1.09001 * 110.72325 * 153.86738 * 22 11 10 35 35 H 1.09003 * 110.72263 * 276.96725 * 22 11 10 36 36 H 1.09001 * 109.47230 * 302.18923 * 25 23 9 37 37 H 1.08996 * 109.47398 * 62.19698 * 25 23 9 38 38 H 1.09005 * 109.46617 * 182.19220 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6494 -0.6009 0.0071 6 6 2.3991 -1.1697 0.0007 7 6 2.0399 -2.5992 0.0010 8 8 0.8763 -2.9338 0.1135 9 7 3.0014 -3.5356 -0.1234 10 6 4.4286 -3.2726 -0.3829 11 6 4.9585 -4.5722 -1.0385 12 1 6.0318 -4.6795 -0.8811 13 7 4.6336 -4.6112 -2.4665 14 6 5.5026 -4.0792 -3.3812 15 1 6.4277 -3.6311 -3.0501 16 6 5.1948 -4.1167 -4.7343 17 7 4.0675 -4.6633 -5.1379 18 14 6.3806 -3.3916 -5.9823 19 1 7.6856 -4.0943 -5.8916 20 1 5.8230 -3.5563 -7.3488 21 1 6.5756 -1.9470 -5.6986 22 6 4.1708 -5.6580 -0.2589 23 6 2.8004 -4.9886 -0.0234 24 1 2.0908 -5.3200 -0.7816 25 6 2.2786 -5.3470 1.3695 26 1 -0.3633 0.0008 1.0277 27 1 -0.3634 0.8896 -0.5145 28 1 -0.3634 -0.8904 -0.5131 29 1 4.5966 -1.1196 0.0134 30 1 4.9543 -3.0774 0.5518 31 1 4.5411 -2.4301 -1.0654 32 1 3.8027 -5.0140 -2.7639 33 1 3.8523 -4.6892 -6.0834 34 1 4.0609 -6.5608 -0.8598 35 1 4.6604 -5.8841 0.6884 36 1 2.9841 -4.9968 2.1230 37 1 1.3110 -4.8711 1.5286 38 1 2.1690 -6.4286 1.4492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989388957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:14 Heat of formation + Delta-G solvation = 23.606786 kcal Electronic energy + Delta-G solvation = -22408.438400 eV Core-core repulsion = 19060.991904 eV Total energy + Delta-G solvation = -3347.446496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -45.97235 -41.18547 -38.76149 -35.81525 -35.52397 -33.98587 -33.11832 -31.96125 -30.16113 -29.68977 -26.99548 -26.00847 -25.55279 -23.05075 -22.46702 -21.38260 -20.45503 -19.24723 -18.81006 -18.35582 -17.84613 -17.44041 -16.56501 -16.35539 -15.50596 -15.44946 -15.14054 -14.80851 -14.53705 -14.29098 -14.15686 -14.03452 -13.54044 -13.48583 -13.17505 -13.14338 -12.83359 -12.69069 -12.40954 -12.26300 -12.21476 -12.02492 -11.62584 -11.47076 -11.14775 -10.99180 -10.94875 -10.78522 -9.68703 -8.96945 -7.92182 -5.20843 0.04856 0.68572 1.50164 1.51619 1.57346 1.70414 2.12975 2.25623 2.57848 2.96517 3.27611 3.39415 3.53879 3.83811 3.85703 3.92212 3.97041 4.14522 4.34983 4.39264 4.47880 4.55964 4.57312 4.67992 4.72127 4.74381 4.76530 4.94564 5.11596 5.12976 5.20535 5.24336 5.37489 5.49633 5.58145 6.28625 6.49868 7.04840 7.14644 7.35619 8.11429 8.32124 9.31118 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.006342 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.978986 B = 4413.842530 C = 5543.429727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.055 3.945 3 N -0.378 5.378 4 O 0.094 5.906 5 C 0.018 3.982 6 C -0.276 4.276 7 C 0.602 3.398 8 O -0.574 6.574 9 N -0.593 5.593 10 C 0.057 3.943 11 C 0.157 3.843 12 H 0.096 0.904 13 N -0.727 5.727 14 C -0.233 4.233 15 H 0.091 0.909 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.307 1.307 21 H -0.278 1.278 22 C -0.122 4.122 23 C 0.136 3.864 24 H 0.040 0.960 25 C -0.148 4.148 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.264 0.736 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.369 0.631 33 H 0.247 0.753 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 3.750 15.673 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 N -0.087 5.087 4 O 0.037 5.963 5 C -0.064 4.064 6 C -0.283 4.283 7 C 0.392 3.608 8 O -0.456 6.456 9 N -0.324 5.324 10 C -0.068 4.068 11 C 0.047 3.953 12 H 0.114 0.886 13 N -0.365 5.365 14 C -0.365 4.365 15 H 0.109 0.891 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.796 3.204 19 H -0.199 1.199 20 H -0.234 1.234 21 H -0.205 1.205 22 C -0.161 4.161 23 C 0.033 3.967 24 H 0.059 0.941 25 C -0.206 4.206 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.279 0.721 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.883 5.009 15.654 16.459 hybrid contribution -0.248 -0.681 -1.504 1.670 sum 0.635 4.328 14.149 14.810 Atomic orbital electron populations 1.20259 0.83977 1.04116 1.04564 1.25213 0.99910 0.86474 0.99182 1.73622 0.89778 1.23918 1.21372 1.84531 1.21010 1.23803 1.66956 1.27574 1.01205 0.82965 0.94620 1.22307 0.94093 0.94989 1.16938 1.16644 0.84207 0.83410 0.76533 1.90710 1.19323 1.82358 1.53165 1.48280 1.09072 1.06394 1.68652 1.23770 0.80001 1.02065 1.00941 1.21683 0.98748 0.91952 0.82891 0.88589 1.42575 1.22740 1.70002 1.01169 1.19670 1.00235 1.29088 0.87516 0.89138 1.25533 0.98978 1.03038 0.99373 1.69830 1.25926 1.52128 1.14442 0.85314 0.78619 0.78482 0.77967 1.19921 1.23394 1.20462 1.23011 0.93127 0.97949 1.01997 1.21572 0.98292 0.79059 0.97804 0.94141 1.22030 1.00997 1.02578 0.94947 0.88437 0.89091 0.90402 0.72061 0.87052 0.91008 0.80014 0.94449 0.90637 0.86423 0.90774 0.94066 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.11 71.24 0.72 -1.15 16 2 C 0.05 1.68 7.58 45.16 0.34 2.02 16 3 N -0.38 -11.37 12.01 -44.78 -0.54 -11.90 16 4 O 0.09 2.52 11.06 77.02 0.85 3.37 16 5 C 0.02 0.44 10.66 67.61 0.72 1.16 16 6 C -0.28 -8.56 6.37 -18.74 -0.12 -8.68 16 7 C 0.60 21.13 7.59 86.65 0.66 21.78 16 8 O -0.57 -23.28 15.05 -4.04 -0.06 -23.34 16 9 N -0.59 -18.30 3.06 -791.91 -2.43 -20.73 16 10 C 0.06 1.48 4.88 86.85 0.42 1.90 16 11 C 0.16 4.78 3.70 46.38 0.17 4.95 16 12 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 13 N -0.73 -32.26 5.25 -316.40 -1.66 -33.92 16 14 C -0.23 -11.57 9.97 84.03 0.84 -10.73 16 15 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 16 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 17 N -0.97 -58.44 13.06 21.65 0.28 -58.15 16 18 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 C -0.12 -3.07 6.06 31.78 0.19 -2.88 16 23 C 0.14 3.97 3.42 45.34 0.16 4.12 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 C -0.15 -3.51 9.10 71.98 0.66 -2.85 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.30 7.23 -2.39 -0.02 2.28 16 29 H 0.26 4.31 5.19 -2.91 -0.02 4.29 16 30 H 0.11 1.84 7.85 -2.39 -0.02 1.82 16 31 H 0.07 2.07 5.98 -2.38 -0.01 2.06 16 32 H 0.37 18.86 7.84 -92.70 -0.73 18.13 16 33 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.12 2.04 7.86 -2.39 -0.02 2.02 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.18 7.09 -2.39 -0.02 1.16 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -70.18 317.48 4.06 -66.12 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.36 Total: 26.49 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.23 Total: 5.91 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -4.34 Total: -124.70 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.79 Total: -19.97 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.18 4.06 -66.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989388957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.724 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds