Wall clock time and date at job start Tue Mar 31 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35314 * 128.03823 * 2 1 4 4 O 1.34016 * 106.66470 * 180.02562 * 3 2 1 5 5 N 1.20902 * 111.84991 * 359.70960 * 4 3 2 6 6 C 1.30987 * 111.43792 * 0.48022 * 5 4 3 7 7 C 1.48335 * 126.93942 * 179.80109 * 6 5 4 8 8 O 1.21488 * 120.00121 * 185.71338 * 7 6 5 9 9 N 1.34776 * 119.99783 * 5.71013 * 7 6 5 10 10 C 1.48210 * 119.96754 * 185.49621 * 9 7 6 11 11 C 1.47144 * 110.34322 * 102.47198 * 10 9 7 12 12 C 1.53801 * 111.83704 * 58.29634 * 11 10 9 13 13 N 1.43466 * 107.95977 * 281.66372 * 12 11 10 14 14 C 1.36929 * 118.94232 * 273.61622 * 13 12 11 15 15 H 1.08000 * 120.00558 * 22.31380 * 14 13 12 16 16 C 1.38821 * 119.99699 * 202.31859 * 14 13 12 17 17 N 1.31621 * 119.99663 * 208.57930 * 16 14 13 18 18 Si 1.86801 * 120.00164 * 28.57715 * 16 14 13 19 19 H 1.48504 * 109.46810 * 266.53943 * 18 16 14 20 20 H 1.48496 * 109.46939 * 146.53857 * 18 16 14 21 21 H 1.48498 * 109.47015 * 26.54116 * 18 16 14 22 22 C 1.48860 * 122.11373 * 93.89203 * 13 12 11 23 23 C 1.43622 * 119.97261 * 5.47868 * 9 7 6 24 24 H 1.09003 * 109.47179 * 269.97701 * 1 2 3 25 25 H 1.09002 * 109.47301 * 29.97788 * 1 2 3 26 26 H 1.09000 * 109.47227 * 149.97888 * 1 2 3 27 27 H 1.07994 * 126.66522 * 0.03668 * 3 2 1 28 28 H 1.08999 * 109.33007 * 342.20397 * 10 9 7 29 29 H 1.08998 * 109.32842 * 222.74032 * 10 9 7 30 30 H 1.08999 * 109.00598 * 297.69705 * 11 10 9 31 31 H 1.08995 * 109.00709 * 178.90197 * 11 10 9 32 32 H 1.09001 * 109.75997 * 162.05504 * 12 11 10 33 33 H 1.08997 * 109.80699 * 41.30774 * 12 11 10 34 34 H 0.97000 * 120.00316 * 5.08552 * 17 16 14 35 35 H 1.08998 * 109.48227 * 80.34837 * 22 13 12 36 36 H 1.09004 * 109.47942 * 200.37921 * 22 13 12 37 37 H 1.09005 * 108.87399 * 31.46498 * 23 9 7 38 38 H 1.08996 * 108.88079 * 149.89998 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 -0.0006 5 7 3.5989 -0.6316 0.0048 6 6 2.3837 -1.1206 -0.0006 7 6 1.9992 -2.5532 -0.0008 8 8 0.8311 -2.8687 -0.1109 9 7 2.9457 -3.5049 0.1210 10 6 2.5773 -4.9353 -0.0013 11 6 2.9607 -5.4509 -1.3250 12 6 4.4684 -5.2941 -1.5854 13 7 4.7155 -3.9272 -1.9444 14 6 4.5853 -3.5524 -3.2549 15 1 3.9759 -4.1390 -3.9265 16 6 5.2367 -2.4183 -3.7204 17 7 4.7299 -1.7336 -4.7238 18 14 6.8324 -1.8641 -2.9229 19 1 6.5358 -0.8664 -1.8636 20 1 7.7115 -1.2495 -3.9497 21 1 7.5181 -3.0359 -2.3213 22 6 5.1147 -2.9047 -0.9389 23 6 4.3103 -3.1321 0.3689 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 2.0559 2.1074 0.0006 28 1 1.5006 -5.0431 0.1298 29 1 3.0910 -5.5075 0.7713 30 1 2.4096 -4.9059 -2.0914 31 1 2.6982 -6.5071 -1.3842 32 1 4.7716 -5.9500 -2.4014 33 1 5.0269 -5.5451 -0.6837 34 1 3.8653 -1.9774 -5.0897 35 1 6.1814 -2.9939 -0.7335 36 1 4.9014 -1.9092 -1.3284 37 1 4.3239 -2.2137 0.9558 38 1 4.7931 -3.9226 0.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989427031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:34 Heat of formation + Delta-G solvation = 73.115630 kcal Electronic energy + Delta-G solvation = -23550.670779 eV Core-core repulsion = 20205.371147 eV Total energy + Delta-G solvation = -3345.299632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.84192 -39.81154 -37.23974 -34.55433 -34.43356 -33.13601 -31.70484 -31.30923 -28.18617 -27.65249 -26.07363 -24.38191 -23.11457 -21.97033 -21.43575 -19.85106 -19.28710 -17.71004 -17.52632 -17.00842 -16.44417 -15.95734 -15.15451 -14.72849 -14.42634 -13.88122 -13.76254 -13.34608 -13.20010 -13.15433 -13.05120 -12.87530 -12.45964 -12.22171 -11.99014 -11.52244 -11.45451 -10.94535 -10.85016 -10.42991 -10.29110 -10.07642 -9.89389 -9.78328 -9.71801 -9.25674 -9.18995 -8.41198 -8.22853 -6.95570 -6.30463 -3.20678 1.43744 1.86336 3.08834 3.35611 3.49104 3.53694 3.57168 3.71934 4.19827 4.65992 4.67560 4.97927 4.99724 5.18854 5.27970 5.43453 5.44806 5.53425 5.60829 5.68439 5.75913 5.78206 5.86285 5.92313 5.96722 6.15643 6.28122 6.31373 6.36769 6.50221 6.68619 6.75713 6.85493 7.08091 7.67471 8.08623 8.21281 8.43648 8.49412 9.07343 9.73089 10.19119 11.13925 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.009672 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.067329 B = 2894.230512 C = 3884.921836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.154 4.154 3 C -0.072 4.072 4 O 0.121 5.879 5 N -0.313 5.313 6 C -0.023 4.023 7 C 0.604 3.396 8 O -0.537 6.537 9 N -0.570 5.570 10 C 0.130 3.870 11 C -0.170 4.170 12 C 0.161 3.839 13 N -0.599 5.599 14 C -0.353 4.353 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.911 5.911 18 Si 1.039 2.961 19 H -0.289 1.289 20 H -0.300 1.300 21 H -0.288 1.288 22 C 0.111 3.889 23 C 0.089 3.911 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.219 0.781 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 2.092 13.467 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.153 4.153 4 O 0.046 5.954 5 N -0.014 5.014 6 C -0.182 4.182 7 C 0.391 3.609 8 O -0.414 6.414 9 N -0.301 5.301 10 C 0.009 3.991 11 C -0.211 4.211 12 C 0.033 3.967 13 N -0.322 5.322 14 C -0.481 4.481 15 H 0.084 0.916 16 C -0.208 4.208 17 N -0.549 5.549 18 Si 0.870 3.130 19 H -0.216 1.216 20 H -0.228 1.228 21 H -0.215 1.215 22 C -0.015 4.015 23 C -0.037 4.037 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.236 0.764 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.869 2.364 13.311 13.820 hybrid contribution -1.836 -0.876 -0.104 2.037 sum -4.705 1.488 13.207 14.099 Atomic orbital electron populations 1.20179 0.86934 1.03885 1.02612 1.21294 0.98884 0.90279 1.05449 1.25687 0.82759 1.01074 1.05760 1.84815 1.29332 1.15756 1.65507 1.74394 1.21291 0.91053 1.14646 1.23359 0.89402 0.97058 1.08333 1.16858 0.85142 0.82451 0.76488 1.90686 1.17808 1.81643 1.51252 1.47210 1.07736 1.06364 1.68784 1.20655 1.01283 0.79046 0.98071 1.21842 1.02123 0.99612 0.97516 1.20328 0.91642 0.86969 0.97811 1.43990 1.80688 1.02862 1.04639 1.20157 1.28897 1.12735 0.86307 0.91602 1.26017 1.03158 0.94030 0.97625 1.70857 1.19445 1.36773 1.27832 0.84196 0.78112 0.75655 0.75045 1.21606 1.22755 1.21468 1.22571 0.95225 0.95049 0.88686 1.22088 0.81834 1.00762 0.99022 0.91013 0.91228 0.89446 0.76433 0.89947 0.91566 0.91180 0.92138 0.93056 0.94706 0.92696 0.94907 0.89653 0.89798 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.06 36.01 0.36 -0.65 16 2 C -0.15 -2.37 6.34 -104.11 -0.66 -3.03 16 3 C -0.07 -0.92 12.24 29.69 0.36 -0.56 16 4 O 0.12 1.96 11.18 17.24 0.19 2.15 16 5 N -0.31 -5.94 7.19 33.29 0.24 -5.70 16 6 C -0.02 -0.43 6.77 -82.52 -0.56 -0.99 16 7 C 0.60 12.30 7.69 -12.11 -0.09 12.21 16 8 O -0.54 -11.50 14.74 5.38 0.08 -11.42 16 9 N -0.57 -10.87 2.46 -177.37 -0.44 -11.30 16 10 C 0.13 2.19 5.73 -5.91 -0.03 2.15 16 11 C -0.17 -3.12 5.64 -29.13 -0.16 -3.28 16 12 C 0.16 3.26 5.63 -5.23 -0.03 3.23 16 13 N -0.60 -14.62 2.34 -171.78 -0.40 -15.02 16 14 C -0.35 -10.15 9.51 -15.06 -0.14 -10.29 16 15 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 16 C -0.01 -0.19 5.02 -17.43 -0.09 -0.28 16 17 N -0.91 -28.85 13.70 55.49 0.76 -28.09 16 18 Si 1.04 26.83 24.54 -169.99 -4.17 22.66 16 19 H -0.29 -7.10 6.71 56.52 0.38 -6.72 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 21 H -0.29 -7.10 6.82 56.52 0.39 -6.71 16 22 C 0.11 2.49 4.35 -1.56 -0.01 2.48 16 23 C 0.09 1.64 4.77 -4.40 -0.02 1.62 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.34 6.80 -51.93 -0.35 0.98 16 27 H 0.22 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.08 1.38 7.08 -51.93 -0.37 1.01 16 29 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.07 1.57 7.91 -51.93 -0.41 1.16 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.06 8.02 -51.93 -0.42 0.65 16 33 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 34 H 0.26 8.36 8.73 -40.82 -0.36 8.01 16 35 H 0.03 0.73 6.19 -51.93 -0.32 0.41 16 36 H 0.09 2.15 3.91 -51.93 -0.20 1.94 16 37 H 0.08 1.48 5.57 -51.93 -0.29 1.19 16 38 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -34.62 298.65 -5.19 -39.81 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.88 Total: -0.21 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.07 Total: 2.61 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.16 Total: -60.11 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.27 Total: -9.26 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.17 Total: 22.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.62 -5.19 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989427031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.927 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds