Wall clock time and date at job start Tue Mar 31 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35314 * 128.03823 * 2 1 4 4 O 1.34016 * 106.66470 * 180.02562 * 3 2 1 5 5 N 1.20902 * 111.84991 * 359.70960 * 4 3 2 6 6 C 1.30987 * 111.43792 * 0.48022 * 5 4 3 7 7 C 1.48335 * 126.93942 * 179.80109 * 6 5 4 8 8 O 1.21488 * 120.00121 * 185.71338 * 7 6 5 9 9 N 1.34776 * 119.99783 * 5.71013 * 7 6 5 10 10 C 1.48210 * 119.96754 * 185.49621 * 9 7 6 11 11 C 1.47144 * 110.34322 * 102.47198 * 10 9 7 12 12 C 1.53801 * 111.83704 * 58.29634 * 11 10 9 13 13 N 1.43466 * 107.95977 * 281.66372 * 12 11 10 14 14 C 1.36929 * 118.94232 * 273.61622 * 13 12 11 15 15 H 1.08000 * 120.00558 * 22.31380 * 14 13 12 16 16 C 1.38821 * 119.99699 * 202.31859 * 14 13 12 17 17 N 1.31621 * 119.99663 * 208.57930 * 16 14 13 18 18 Si 1.86801 * 120.00164 * 28.57715 * 16 14 13 19 19 H 1.48504 * 109.46810 * 266.53943 * 18 16 14 20 20 H 1.48496 * 109.46939 * 146.53857 * 18 16 14 21 21 H 1.48498 * 109.47015 * 26.54116 * 18 16 14 22 22 C 1.48860 * 122.11373 * 93.89203 * 13 12 11 23 23 C 1.43622 * 119.97261 * 5.47868 * 9 7 6 24 24 H 1.09003 * 109.47179 * 269.97701 * 1 2 3 25 25 H 1.09002 * 109.47301 * 29.97788 * 1 2 3 26 26 H 1.09000 * 109.47227 * 149.97888 * 1 2 3 27 27 H 1.07994 * 126.66522 * 0.03668 * 3 2 1 28 28 H 1.08999 * 109.33007 * 342.20397 * 10 9 7 29 29 H 1.08998 * 109.32842 * 222.74032 * 10 9 7 30 30 H 1.08999 * 109.00598 * 297.69705 * 11 10 9 31 31 H 1.08995 * 109.00709 * 178.90197 * 11 10 9 32 32 H 1.09001 * 109.75997 * 162.05504 * 12 11 10 33 33 H 1.08997 * 109.80699 * 41.30774 * 12 11 10 34 34 H 0.97000 * 120.00316 * 5.08552 * 17 16 14 35 35 H 1.08998 * 109.48227 * 80.34837 * 22 13 12 36 36 H 1.09004 * 109.47942 * 200.37921 * 22 13 12 37 37 H 1.09005 * 108.87399 * 31.46498 * 23 9 7 38 38 H 1.08996 * 108.88079 * 149.89998 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 -0.0006 5 7 3.5989 -0.6316 0.0048 6 6 2.3837 -1.1206 -0.0006 7 6 1.9992 -2.5532 -0.0008 8 8 0.8311 -2.8687 -0.1109 9 7 2.9457 -3.5049 0.1210 10 6 2.5773 -4.9353 -0.0013 11 6 2.9607 -5.4509 -1.3250 12 6 4.4684 -5.2941 -1.5854 13 7 4.7155 -3.9272 -1.9444 14 6 4.5853 -3.5524 -3.2549 15 1 3.9759 -4.1390 -3.9265 16 6 5.2367 -2.4183 -3.7204 17 7 4.7299 -1.7336 -4.7238 18 14 6.8324 -1.8641 -2.9229 19 1 6.5358 -0.8664 -1.8636 20 1 7.7115 -1.2495 -3.9497 21 1 7.5181 -3.0359 -2.3213 22 6 5.1147 -2.9047 -0.9389 23 6 4.3103 -3.1321 0.3689 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 2.0559 2.1074 0.0006 28 1 1.5006 -5.0431 0.1298 29 1 3.0910 -5.5075 0.7713 30 1 2.4096 -4.9059 -2.0914 31 1 2.6982 -6.5071 -1.3842 32 1 4.7716 -5.9500 -2.4014 33 1 5.0269 -5.5451 -0.6837 34 1 3.8653 -1.9774 -5.0897 35 1 6.1814 -2.9939 -0.7335 36 1 4.9014 -1.9092 -1.3284 37 1 4.3239 -2.2137 0.9558 38 1 4.7931 -3.9226 0.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989427031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:33 Heat of formation + Delta-G solvation = 48.631308 kcal Electronic energy + Delta-G solvation = -23551.732499 eV Core-core repulsion = 20205.371147 eV Total energy + Delta-G solvation = -3346.361352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.10843 -41.31093 -38.89677 -36.22095 -35.76448 -34.64629 -33.51136 -32.90355 -29.59124 -29.03018 -27.72530 -25.84293 -25.02894 -23.40363 -22.65812 -21.66685 -20.64501 -19.50713 -18.88798 -18.55723 -17.91794 -17.46735 -16.83985 -16.39245 -15.96103 -15.64903 -15.29564 -14.83285 -14.70326 -14.61557 -14.28965 -14.14435 -14.02787 -13.73802 -13.48002 -13.34294 -12.82072 -12.61661 -12.22523 -12.08931 -11.99793 -11.75929 -11.63143 -11.43149 -11.29404 -11.17783 -10.59202 -10.35047 -9.77035 -9.01392 -8.63416 -5.46748 0.12163 0.73240 1.41407 1.51647 1.67495 1.71968 2.06601 2.33409 2.53566 2.86575 2.99534 3.40239 3.51037 3.79011 3.97563 4.01731 4.07908 4.11382 4.27700 4.36298 4.41726 4.52688 4.66890 4.75103 4.77107 4.81672 4.83074 4.90986 4.92724 4.99291 5.10547 5.29774 5.33590 5.56431 5.76045 6.18029 6.24113 6.82567 6.88195 7.12596 7.68699 8.01123 8.79095 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.009672 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.067329 B = 2894.230512 C = 3884.921836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.177 4.177 3 C -0.041 4.041 4 O 0.120 5.880 5 N -0.339 5.339 6 C -0.059 4.059 7 C 0.591 3.409 8 O -0.561 6.561 9 N -0.575 5.575 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.154 3.846 13 N -0.612 5.612 14 C -0.337 4.337 15 H 0.024 0.976 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 1.087 2.913 19 H -0.270 1.270 20 H -0.308 1.308 21 H -0.265 1.265 22 C 0.104 3.896 23 C 0.096 3.904 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.277 0.723 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.015 0.985 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 2.526 16.425 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.183 4.183 3 C -0.121 4.121 4 O 0.044 5.956 5 N -0.040 5.040 6 C -0.216 4.216 7 C 0.378 3.622 8 O -0.440 6.440 9 N -0.305 5.305 10 C 0.007 3.993 11 C -0.196 4.196 12 C 0.027 3.973 13 N -0.335 5.335 14 C -0.467 4.467 15 H 0.042 0.958 16 C -0.257 4.257 17 N -0.589 5.589 18 Si 0.912 3.088 19 H -0.196 1.196 20 H -0.236 1.236 21 H -0.190 1.190 22 C -0.021 4.021 23 C -0.029 4.029 24 H 0.107 0.893 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.292 0.708 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.033 0.967 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.968 2.738 16.314 16.659 hybrid contribution -2.223 -1.038 -1.050 2.668 sum -4.191 1.700 15.265 15.921 Atomic orbital electron populations 1.20193 0.85464 1.03691 1.03684 1.21735 1.00160 0.89958 1.06424 1.26665 0.80620 1.02718 1.02146 1.84753 1.31040 1.14931 1.64831 1.74357 1.21528 0.92182 1.15911 1.23552 0.90671 0.97264 1.10129 1.17287 0.85217 0.83541 0.76153 1.90654 1.18723 1.82279 1.52368 1.47420 1.07834 1.07046 1.68191 1.20842 1.01864 0.78454 0.98190 1.21675 0.99986 1.01101 0.96870 1.20558 0.93034 0.84621 0.99074 1.44082 1.81054 1.05080 1.03312 1.19990 1.26781 1.11674 0.88212 0.95833 1.27189 1.05808 0.94718 0.97982 1.70982 1.19145 1.38552 1.30206 0.83568 0.74062 0.76509 0.74629 1.19629 1.23628 1.19012 1.22633 0.96513 0.93100 0.89827 1.22031 0.81086 1.02822 0.96982 0.89293 0.88134 0.92802 0.70783 0.90236 0.87002 0.96652 0.88685 0.94143 0.90687 0.94713 0.93605 0.92495 0.88914 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.06 71.24 0.72 -1.06 16 2 C -0.18 -5.22 6.34 -19.53 -0.12 -5.35 16 3 C -0.04 -0.93 12.24 67.14 0.82 -0.11 16 4 O 0.12 3.67 11.18 71.88 0.80 4.48 16 5 N -0.34 -12.53 7.19 -49.51 -0.36 -12.89 16 6 C -0.06 -2.22 6.77 42.96 0.29 -1.93 16 7 C 0.59 24.17 7.69 86.93 0.67 24.84 16 8 O -0.56 -24.65 14.74 -3.68 -0.05 -24.70 16 9 N -0.57 -21.10 2.46 -833.38 -2.05 -23.15 16 10 C 0.13 3.96 5.73 84.23 0.48 4.44 16 11 C -0.16 -5.54 5.64 29.04 0.16 -5.38 16 12 C 0.15 5.95 5.63 87.21 0.49 6.44 16 13 N -0.61 -29.49 2.34 -697.37 -1.63 -31.12 16 14 C -0.34 -20.00 9.51 84.04 0.80 -19.20 16 15 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 16 C -0.06 -3.77 5.02 84.86 0.43 -3.34 16 17 N -0.95 -62.51 13.70 21.65 0.30 -62.21 16 18 Si 1.09 54.37 24.54 68.60 1.68 56.05 16 19 H -0.27 -12.61 6.71 99.48 0.67 -11.95 16 20 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 21 H -0.27 -12.12 6.82 99.48 0.68 -11.44 16 22 C 0.10 4.50 4.35 86.68 0.38 4.88 16 23 C 0.10 3.28 4.77 87.67 0.42 3.70 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.68 6.80 -2.39 -0.02 1.66 16 27 H 0.28 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.08 2.56 7.08 -2.39 -0.02 2.55 16 29 H 0.11 2.54 8.06 -2.39 -0.02 2.52 16 30 H 0.01 0.69 7.91 -2.39 -0.02 0.67 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.04 1.64 8.02 -2.39 -0.02 1.62 16 33 H 0.07 2.34 7.59 -2.39 -0.02 2.32 16 34 H 0.24 16.50 8.73 -92.71 -0.81 15.69 16 35 H 0.05 1.87 6.19 -2.39 -0.01 1.86 16 36 H 0.06 2.81 3.91 -2.39 -0.01 2.80 16 37 H 0.09 3.06 5.57 -2.38 -0.01 3.05 16 38 H 0.11 2.79 7.73 -2.39 -0.02 2.77 16 Total: -1.00 -81.40 298.65 5.19 -76.21 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.97 Total: 9.40 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.53 Total: 7.93 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -3.74 Total: -129.37 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.75 Total: -20.22 kcal Atomic # 14 Polarization: 54.37 SS G_CDS: 1.68 Total: 56.05 kcal Total: -81.40 5.19 -76.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989427031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.841 kcal (2) G-P(sol) polarization free energy of solvation -81.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds