Wall clock time and date at job start Tue Mar 31 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41257 * 128.07753 * 2 1 4 4 N 1.30126 * 106.59071 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98191 * 359.72716 * 4 3 2 6 6 C 1.34637 * 111.46535 * 0.44936 * 5 4 3 7 7 C 1.47509 * 126.94510 * 179.83093 * 6 5 4 8 8 O 1.21584 * 120.00209 * 179.68523 * 7 6 5 9 9 N 1.34779 * 119.99737 * 359.68366 * 7 6 5 10 10 C 1.47421 * 125.64950 * 359.97438 * 9 7 6 11 11 C 1.54916 * 104.83435 * 204.15166 * 10 9 7 12 12 H 1.09003 * 111.03464 * 81.07861 * 11 10 9 13 13 N 1.46499 * 111.00526 * 204.91702 * 11 10 9 14 14 C 1.36939 * 119.99933 * 267.46956 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31612 * 120.00054 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99708 * 18 16 14 20 20 H 1.48502 * 109.46736 * 209.99481 * 18 16 14 21 21 H 1.48496 * 109.47375 * 329.99177 * 18 16 14 22 22 C 1.55159 * 101.57848 * 322.99121 * 11 10 9 23 23 C 1.47024 * 125.64931 * 180.02562 * 9 7 6 24 24 H 1.09002 * 109.88091 * 298.33589 * 23 9 7 25 25 C 1.53009 * 109.88277 * 59.50054 * 23 9 7 26 26 H 1.09005 * 109.47153 * 270.00144 * 1 2 3 27 27 H 1.09004 * 109.47015 * 29.99866 * 1 2 3 28 28 H 1.08996 * 109.47467 * 149.99774 * 1 2 3 29 29 H 1.08003 * 126.70317 * 359.96933 * 3 2 1 30 30 H 1.08996 * 110.37002 * 85.31268 * 10 9 7 31 31 H 1.09007 * 110.36737 * 322.98876 * 10 9 7 32 32 H 0.97001 * 119.99790 * 87.18929 * 13 11 10 33 33 H 0.96998 * 120.00381 * 180.02562 * 17 16 14 34 34 H 1.08992 * 110.71853 * 153.86948 * 22 11 10 35 35 H 1.09001 * 110.71709 * 276.96267 * 22 11 10 36 36 H 1.09001 * 109.46879 * 177.81173 * 25 23 9 37 37 H 1.09003 * 109.46685 * 297.80898 * 25 23 9 38 38 H 1.08993 * 109.46765 * 57.80770 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5736 0.0062 6 6 2.3508 -1.0771 0.0005 7 6 1.9695 -2.5020 0.0012 8 8 0.7952 -2.8171 0.0013 9 7 2.9228 -3.4547 0.0017 10 6 4.3774 -3.2147 0.0010 11 6 4.9910 -4.4989 -0.6109 12 1 4.9342 -4.4794 -1.6992 13 7 6.3734 -4.6851 -0.1632 14 6 7.4080 -4.1895 -0.9110 15 1 7.2049 -3.6651 -1.8331 16 6 8.7175 -4.3609 -0.4838 17 7 9.7119 -3.8850 -1.2028 18 14 9.0686 -5.2683 1.1108 19 1 9.2328 -6.7173 0.8301 20 1 10.3154 -4.7374 1.7182 21 1 7.9368 -5.0716 2.0518 22 6 4.0640 -5.5966 -0.0252 23 6 2.6844 -4.9055 0.0018 24 1 2.1439 -5.1923 0.9039 25 6 1.8799 -5.3008 -1.2382 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 2.0947 2.1541 -0.0005 30 1 4.7384 -3.0698 1.0192 31 1 4.6187 -2.3483 -0.6149 32 1 6.5556 -5.1560 0.6651 33 1 10.6270 -4.0050 -0.9046 34 1 4.0442 -6.4715 -0.6748 35 1 4.3804 -5.8721 0.9809 36 1 1.7404 -6.3818 -1.2514 37 1 0.9073 -4.8093 -1.2121 38 1 2.4187 -4.9929 -2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989631695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:12 Heat of formation + Delta-G solvation = 47.950379 kcal Electronic energy + Delta-G solvation = -22211.746443 eV Core-core repulsion = 18865.355564 eV Total energy + Delta-G solvation = -3346.390879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.02636 -40.10464 -37.74140 -34.86826 -34.33120 -32.79689 -31.62208 -31.29500 -28.95926 -28.33625 -25.67562 -24.52955 -23.40415 -22.69589 -21.28403 -20.37527 -19.64946 -17.83429 -17.79419 -17.66898 -16.11201 -15.72641 -15.62839 -14.69866 -14.27845 -14.00015 -13.86533 -13.54378 -13.41656 -13.32029 -13.09334 -12.81945 -12.69995 -12.60319 -12.08645 -12.02116 -11.58552 -11.34617 -11.14049 -10.86932 -10.71982 -10.44956 -10.40904 -10.15279 -10.09489 -9.66775 -9.53836 -9.08642 -8.58334 -7.42766 -5.85357 -3.24082 0.77668 2.01350 2.55317 2.98525 3.15808 3.32236 3.34516 3.41232 4.09266 4.36195 4.51273 4.56533 4.84334 4.94357 4.96158 5.05758 5.19590 5.23720 5.44688 5.47326 5.49729 5.57118 5.69594 5.71332 5.72413 5.80679 6.00188 6.03983 6.08936 6.09560 6.27141 6.39198 6.44821 6.66952 7.44247 7.85114 7.89808 8.11436 8.32786 9.08987 9.80821 9.98076 11.32214 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.005309 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.516239 B = 5272.392157 C = 6353.458846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.129 4.129 3 C -0.021 4.021 4 N -0.342 5.342 5 O 0.128 5.872 6 C -0.084 4.084 7 C 0.616 3.384 8 O -0.523 6.523 9 N -0.595 5.595 10 C 0.066 3.934 11 C 0.181 3.819 12 H 0.079 0.921 13 N -0.734 5.734 14 C -0.255 4.255 15 H 0.093 0.907 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.142 4.142 23 C 0.141 3.859 24 H 0.076 0.924 25 C -0.163 4.163 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.196 0.804 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.365 0.635 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 3.279 3.120 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C -0.198 4.198 4 N -0.040 5.040 5 O 0.054 5.946 6 C -0.150 4.150 7 C 0.402 3.598 8 O -0.401 6.401 9 N -0.328 5.328 10 C -0.059 4.059 11 C 0.069 3.931 12 H 0.097 0.903 13 N -0.375 5.375 14 C -0.384 4.384 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.574 5.574 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.181 4.181 23 C 0.038 3.962 24 H 0.094 0.906 25 C -0.221 4.221 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.213 0.787 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.803 3.831 2.929 18.444 hybrid contribution -0.178 -0.400 1.226 1.301 sum -17.981 3.431 4.154 18.771 Atomic orbital electron populations 1.20285 0.86494 1.03952 1.03207 1.21596 0.98889 0.90311 1.02550 1.24977 0.87853 1.01961 1.05035 1.73827 1.23016 0.91674 1.15450 1.85159 1.27888 1.15153 1.66386 1.24011 0.84749 0.96139 1.10085 1.16129 0.84732 0.81111 0.77791 1.90787 1.16805 1.80520 1.51997 1.48513 1.07810 1.06338 1.70090 1.23709 0.76750 1.02896 1.02586 1.21244 0.84200 0.89918 0.97788 0.90335 1.42667 1.00570 1.67763 1.26477 1.19078 0.84719 1.30424 1.04222 0.88914 1.24672 0.95430 1.00239 0.98157 1.69693 0.98678 1.49987 1.39067 0.86582 0.77594 0.80035 0.84474 1.20914 1.21624 1.20239 1.23094 0.93203 0.99253 1.02561 1.21578 0.96995 0.78642 0.99000 0.90583 1.22161 1.00983 1.01532 0.97431 0.90411 0.90948 0.89251 0.78658 0.90786 0.89885 0.80184 0.92864 0.89540 0.90593 0.91553 0.91307 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.96 36.01 0.36 -0.42 16 2 C -0.13 -1.58 6.37 -103.98 -0.66 -2.25 16 3 C -0.02 -0.25 12.14 -17.13 -0.21 -0.45 16 4 N -0.34 -5.20 12.04 30.46 0.37 -4.83 16 5 O 0.13 2.04 8.58 15.56 0.13 2.17 16 6 C -0.08 -1.23 7.06 -36.32 -0.26 -1.49 16 7 C 0.62 9.39 7.63 -12.48 -0.10 9.29 16 8 O -0.52 -8.37 14.02 5.29 0.07 -8.30 16 9 N -0.60 -8.85 3.08 -164.24 -0.51 -9.35 16 10 C 0.07 1.09 5.90 -2.53 -0.01 1.08 16 11 C 0.18 3.15 3.71 -65.78 -0.24 2.91 16 12 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 13 N -0.73 -16.00 5.05 -51.34 -0.26 -16.26 16 14 C -0.25 -6.80 10.44 -15.06 -0.16 -6.96 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 17 N -0.93 -28.29 13.97 55.49 0.78 -27.51 16 18 Si 0.88 21.16 27.74 -169.99 -4.71 16.44 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 22 C -0.14 -1.95 6.14 -24.90 -0.15 -2.10 16 23 C 0.14 1.85 3.49 -66.95 -0.23 1.61 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 C -0.16 -1.95 9.05 37.16 0.34 -1.61 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.97 6.73 -51.93 -0.35 0.62 16 29 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.46 6.28 -51.93 -0.33 1.13 16 32 H 0.36 7.78 5.62 -40.82 -0.23 7.55 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.09 1.08 7.83 -51.93 -0.41 0.67 16 35 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.89 6.76 -51.93 -0.35 0.54 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -31.04 315.20 -5.86 -36.89 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.05 Total: 6.16 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.43 Total: -0.16 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.38 Total: -57.96 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: 0.21 Total: -6.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.04 -5.86 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989631695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.845 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds