Wall clock time and date at job start Tue Mar 31 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41260 * 128.07929 * 2 1 4 4 N 1.30126 * 106.59275 * 179.97438 * 3 2 1 5 5 O 1.20890 * 111.98142 * 359.70040 * 4 3 2 6 6 C 1.34645 * 111.46512 * 0.49277 * 5 4 3 7 7 C 1.47508 * 126.94228 * 179.78690 * 6 5 4 8 8 O 1.21588 * 120.00236 * 179.68240 * 7 6 5 9 9 N 1.34779 * 120.00095 * 359.68530 * 7 6 5 10 10 C 1.47021 * 125.64696 * 0.04383 * 9 7 6 11 11 C 1.54326 * 107.27002 * 181.01910 * 10 9 7 12 12 H 1.09000 * 110.72348 * 263.82382 * 11 10 9 13 13 N 1.46508 * 110.71770 * 140.55507 * 11 10 9 14 14 C 1.36932 * 120.00057 * 91.47825 * 13 11 10 15 15 H 1.08001 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.38808 * 120.00045 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00283 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00135 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47240 * 89.99618 * 18 16 14 20 20 H 1.48500 * 109.47039 * 210.00137 * 18 16 14 21 21 H 1.48501 * 109.46661 * 329.99468 * 18 16 14 22 22 C 1.55151 * 102.94313 * 22.19392 * 11 10 9 23 23 C 1.47421 * 125.64852 * 179.97438 * 9 7 6 24 24 H 1.09001 * 110.37117 * 274.74944 * 23 9 7 25 25 C 1.53005 * 110.45971 * 37.02703 * 23 9 7 26 26 H 1.08999 * 109.47242 * 270.02977 * 1 2 3 27 27 H 1.09005 * 109.46666 * 30.02537 * 1 2 3 28 28 H 1.08995 * 109.47399 * 150.02286 * 1 2 3 29 29 H 1.08008 * 126.70410 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.88310 * 300.43775 * 10 9 7 31 31 H 1.09002 * 109.88672 * 61.44815 * 10 9 7 32 32 H 0.97000 * 119.99866 * 271.48230 * 13 11 10 33 33 H 0.96995 * 120.00289 * 179.97438 * 17 16 14 34 34 H 1.08998 * 111.00631 * 206.42424 * 22 11 10 35 35 H 1.09004 * 111.00792 * 82.56822 * 22 11 10 36 36 H 1.08999 * 109.47207 * 175.45750 * 25 23 9 37 37 H 1.09000 * 109.46876 * 295.46068 * 25 23 9 38 38 H 1.09005 * 109.46953 * 55.45870 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5735 0.0068 6 6 2.3508 -1.0771 0.0005 7 6 1.9695 -2.5020 0.0007 8 8 0.7951 -2.8172 0.0004 9 7 2.9228 -3.4548 0.0012 10 6 4.3734 -3.2154 0.0025 11 6 5.0654 -4.5945 -0.0235 12 1 5.3384 -4.9082 0.9840 13 7 6.2419 -4.5677 -0.8962 14 6 7.4722 -4.2633 -0.3777 15 1 7.5752 -4.0425 0.6745 16 6 8.5869 -4.2383 -1.2044 17 7 9.7696 -3.9462 -0.7059 18 14 8.4088 -4.6194 -3.0244 19 1 8.1368 -3.3636 -3.7687 20 1 9.6651 -5.2309 -3.5274 21 1 7.2828 -5.5668 -3.2238 22 6 3.9686 -5.5226 -0.6092 23 6 2.6837 -4.9095 0.0019 24 1 2.5387 -5.2696 1.0204 25 6 1.4677 -5.2521 -0.8612 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3634 -0.8901 -0.5134 29 1 2.0947 2.1542 0.0004 30 1 4.6554 -2.6424 -0.8807 31 1 4.6587 -2.6719 0.9033 32 1 6.1494 -4.7655 -1.8413 33 1 10.5486 -3.9292 -1.2835 34 1 4.1077 -6.5508 -0.2753 35 1 3.9493 -5.4662 -1.6976 36 1 1.3537 -6.3347 -0.9150 37 1 0.5731 -4.8140 -0.4186 38 1 1.6101 -4.8514 -1.8649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989631696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:15 Heat of formation + Delta-G solvation = 28.719391 kcal Electronic energy + Delta-G solvation = -22244.578414 eV Core-core repulsion = 18897.353617 eV Total energy + Delta-G solvation = -3347.224797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.05988 -41.31544 -38.95913 -36.21962 -35.67860 -33.91672 -33.49971 -32.40433 -30.60655 -29.24269 -26.77725 -25.83844 -24.94558 -23.73807 -22.35771 -21.90827 -20.81181 -19.71242 -18.87622 -18.60741 -17.73950 -17.03128 -16.66298 -16.32654 -15.67435 -15.40556 -15.09959 -14.94027 -14.55505 -14.36288 -14.20954 -14.15077 -13.74251 -13.62156 -13.42462 -13.15047 -13.01106 -12.89205 -12.39489 -12.24955 -12.22065 -11.99037 -11.83290 -11.57547 -11.46981 -11.13163 -10.94284 -10.56056 -9.76119 -9.38792 -8.01620 -5.37219 -0.31397 1.05343 1.39086 1.42288 1.47361 1.49779 1.83602 2.03186 2.49126 3.17017 3.23359 3.28526 3.57235 3.64588 3.76857 3.80800 3.97271 4.14158 4.26567 4.27146 4.41562 4.46465 4.72182 4.75639 4.79232 4.79993 4.85609 4.92511 5.08822 5.11635 5.21037 5.27417 5.29642 5.49706 5.77862 6.20925 6.24818 6.73864 7.03228 7.07013 7.80507 7.98944 9.19379 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.005500 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.870875 B = 5089.927163 C = 6152.343423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.118 4.118 3 C -0.003 4.003 4 N -0.374 5.374 5 O 0.096 5.904 6 C -0.113 4.113 7 C 0.616 3.384 8 O -0.527 6.527 9 N -0.597 5.597 10 C 0.085 3.915 11 C 0.170 3.830 12 H 0.077 0.923 13 N -0.738 5.738 14 C -0.233 4.233 15 H 0.063 0.937 16 C -0.058 4.058 17 N -0.981 5.981 18 Si 0.948 3.052 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.245 1.245 22 C -0.127 4.127 23 C 0.136 3.864 24 H 0.096 0.904 25 C -0.153 4.153 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.368 0.632 33 H 0.258 0.742 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.067 3.337 0.213 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C -0.181 4.181 4 N -0.077 5.077 5 O 0.027 5.973 6 C -0.178 4.178 7 C 0.403 3.597 8 O -0.406 6.406 9 N -0.329 5.329 10 C -0.041 4.041 11 C 0.060 3.940 12 H 0.095 0.905 13 N -0.380 5.380 14 C -0.364 4.364 15 H 0.081 0.919 16 C -0.250 4.250 17 N -0.631 5.631 18 Si 0.776 3.224 19 H -0.211 1.211 20 H -0.224 1.224 21 H -0.169 1.169 22 C -0.166 4.166 23 C 0.034 3.966 24 H 0.114 0.886 25 C -0.210 4.210 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.202 0.798 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.339 3.783 0.366 21.674 hybrid contribution 0.257 0.155 -0.958 1.004 sum -21.082 3.938 -0.592 21.455 Atomic orbital electron populations 1.20398 0.84255 1.04781 1.04215 1.22086 1.00214 0.89570 1.00447 1.25676 0.86561 1.03626 1.02187 1.73821 1.24989 0.91571 1.17336 1.85106 1.28703 1.15631 1.67816 1.24239 0.85104 0.96682 1.11787 1.16204 0.84657 0.81372 0.77473 1.90751 1.16841 1.80500 1.52535 1.48538 1.06677 1.07440 1.70294 1.23010 0.78239 1.01376 1.01517 1.21335 0.85820 0.91495 0.95340 0.90470 1.42663 1.03567 1.84143 1.07611 1.19044 0.84783 1.38000 0.94585 0.91942 1.25446 0.94900 1.02247 1.02360 1.69873 0.99411 1.57238 1.36606 0.85512 0.77545 0.78416 0.80943 1.21143 1.22376 1.16919 1.23179 0.91903 1.00339 1.01163 1.22150 0.96109 0.77290 1.01004 0.88576 1.22070 0.97246 1.02909 0.98818 0.89119 0.87895 0.90594 0.74626 0.92256 0.92050 0.79765 0.93361 0.87277 0.90468 0.89309 0.90999 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.96 71.24 0.71 -0.57 16 2 C -0.12 -2.70 6.37 -19.45 -0.12 -2.83 16 3 C 0.00 -0.06 12.14 85.69 1.04 0.98 16 4 N -0.37 -11.37 12.04 -58.55 -0.71 -12.08 16 5 O 0.10 3.15 9.02 65.79 0.59 3.75 16 6 C -0.11 -3.27 7.08 24.38 0.17 -3.10 16 7 C 0.62 18.24 7.63 86.69 0.66 18.90 16 8 O -0.53 -15.84 12.84 -3.99 -0.05 -15.89 16 9 N -0.60 -17.24 3.24 -791.86 -2.57 -19.81 16 10 C 0.08 2.82 5.33 86.73 0.46 3.28 16 11 C 0.17 5.78 3.61 46.18 0.17 5.95 16 12 H 0.08 2.67 8.09 -2.39 -0.02 2.65 16 13 N -0.74 -31.96 4.95 -317.32 -1.57 -33.53 16 14 C -0.23 -12.68 10.44 84.03 0.88 -11.80 16 15 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 17 N -0.98 -61.92 13.97 21.65 0.30 -61.62 16 18 Si 0.95 44.24 27.74 68.60 1.90 46.15 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.24 -10.04 6.52 99.48 0.65 -9.39 16 22 C -0.13 -3.21 6.13 31.99 0.20 -3.02 16 23 C 0.14 3.24 3.76 45.48 0.17 3.41 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 C -0.15 -3.27 8.60 71.98 0.62 -2.65 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.48 6.73 -2.39 -0.02 1.46 16 29 H 0.24 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.06 2.21 7.62 -2.39 -0.02 2.19 16 31 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 32 H 0.37 15.36 5.62 -92.71 -0.52 14.84 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 1.97 7.93 -2.38 -0.02 1.96 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.72 6.09 -2.39 -0.01 1.71 16 38 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -69.27 314.27 3.82 -65.44 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.50 Total: 21.87 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.42 Total: 5.71 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -4.54 Total: -127.03 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.54 Total: -12.14 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.15 kcal Total: -69.27 3.82 -65.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989631696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.163 kcal (2) G-P(sol) polarization free energy of solvation -69.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds