Wall clock time and date at job start Tue Mar 31 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 128.03788 * 2 1 4 4 O 1.34022 * 106.66985 * 179.97438 * 3 2 1 5 5 N 1.20905 * 111.84070 * 359.97438 * 4 3 2 6 6 C 1.30984 * 111.44289 * 0.02562 * 5 4 3 7 7 C 1.48333 * 126.93387 * 180.02562 * 6 5 4 8 8 O 1.21493 * 119.99696 * 179.97438 * 7 6 5 9 9 N 1.34772 * 120.00255 * 359.97438 * 7 6 5 10 10 C 1.47019 * 125.64722 * 359.69221 * 9 7 6 11 11 C 1.54340 * 107.26604 * 178.85185 * 10 9 7 12 12 H 1.08994 * 110.67182 * 96.52163 * 11 10 9 13 13 N 1.46497 * 110.84850 * 219.67738 * 11 10 9 14 14 C 1.36941 * 119.99561 * 268.68610 * 13 11 10 15 15 H 1.07999 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00304 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00270 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99412 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47019 * 90.00337 * 18 16 14 20 20 H 1.48501 * 109.46687 * 210.00133 * 18 16 14 21 21 H 1.48493 * 109.47308 * 330.00250 * 18 16 14 22 22 C 1.55159 * 103.01703 * 338.14033 * 11 10 9 23 23 C 1.47431 * 125.64697 * 179.97438 * 9 7 6 24 24 H 1.09002 * 110.36345 * 85.14648 * 23 9 7 25 25 C 1.52988 * 110.36792 * 322.93220 * 23 9 7 26 26 H 1.09009 * 109.46916 * 270.04111 * 1 2 3 27 27 H 1.08996 * 109.47465 * 30.04280 * 1 2 3 28 28 H 1.08998 * 109.46863 * 150.04660 * 1 2 3 29 29 H 1.08003 * 126.66497 * 359.94051 * 3 2 1 30 30 H 1.08998 * 109.88541 * 298.39210 * 10 9 7 31 31 H 1.08995 * 109.88348 * 59.56134 * 10 9 7 32 32 H 0.96992 * 120.00573 * 88.69400 * 13 11 10 33 33 H 0.96999 * 119.99582 * 179.97438 * 17 16 14 34 34 H 1.09007 * 111.00318 * 277.23139 * 22 11 10 35 35 H 1.08998 * 111.00579 * 153.38303 * 22 11 10 36 36 H 1.09007 * 109.47724 * 61.45015 * 25 23 9 37 37 H 1.09002 * 109.47155 * 181.45302 * 25 23 9 38 38 H 1.09006 * 109.47106 * 301.45560 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 0.0006 5 7 3.5989 -0.6316 0.0014 6 6 2.3837 -1.1205 0.0010 7 6 1.9993 -2.5532 0.0022 8 8 0.8257 -2.8672 0.0021 9 7 2.9519 -3.5065 0.0035 10 6 4.4027 -3.2681 -0.0026 11 6 5.0937 -4.6477 0.0312 12 1 5.3694 -4.9647 -0.9745 13 7 6.2695 -4.6207 0.9047 14 6 7.5004 -4.3178 0.3866 15 1 7.6043 -4.0984 -0.6658 16 6 8.6147 -4.2926 1.2140 17 7 9.7977 -4.0010 0.7162 18 14 8.4349 -4.6712 3.0344 19 1 8.6112 -6.1290 3.2566 20 1 9.4665 -3.9256 3.7993 21 1 7.0842 -4.2602 3.4945 22 6 3.9958 -5.5743 0.6172 23 6 2.7118 -4.9611 0.0054 24 1 2.5648 -5.3226 -1.0124 25 6 1.4959 -5.2989 0.8703 26 1 -0.3633 0.0007 1.0278 27 1 -0.3634 0.8895 -0.5145 28 1 -0.3633 -0.8904 -0.5131 29 1 2.0559 2.1075 -0.0009 30 1 4.6864 -2.7314 -0.9078 31 1 4.6873 -2.6914 0.8774 32 1 6.1762 -4.8174 1.8498 33 1 10.5762 -3.9830 1.2945 34 1 3.9758 -5.5165 1.7055 35 1 4.1344 -6.6031 0.2847 36 1 0.6106 -4.8149 0.4577 37 1 1.3473 -6.3787 0.8823 38 1 1.6634 -4.9439 1.8872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989653907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:54 Heat of formation + Delta-G solvation = 51.044917 kcal Electronic energy + Delta-G solvation = -22179.388963 eV Core-core repulsion = 18833.132274 eV Total energy + Delta-G solvation = -3346.256690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.09928 -40.04353 -37.56307 -34.77487 -34.33868 -32.83645 -31.57195 -31.19231 -28.97827 -28.25656 -25.61991 -24.84791 -23.45478 -21.79103 -21.52547 -20.41823 -19.40093 -17.80123 -17.72444 -17.43419 -16.62680 -16.18903 -15.18773 -14.66184 -14.32523 -14.09824 -13.80697 -13.42140 -13.40036 -13.33165 -13.24382 -12.62776 -12.51540 -12.24366 -12.13698 -11.92257 -11.57266 -11.41148 -11.14191 -10.83623 -10.73728 -10.44404 -10.29082 -10.12336 -9.77398 -9.65186 -9.53205 -9.03517 -8.47758 -7.40714 -5.83921 -3.21908 1.18405 1.59547 2.84932 3.13175 3.21777 3.33474 3.36150 3.41612 3.93275 4.41163 4.52865 4.72966 4.86761 4.96959 5.00857 5.03917 5.29625 5.34688 5.47588 5.50689 5.52491 5.55412 5.67909 5.69063 5.75458 5.89286 5.99400 6.08717 6.16297 6.26372 6.32814 6.45543 6.56320 6.74955 7.57728 7.89685 7.95926 8.20251 8.34534 9.10768 9.82977 10.00846 11.33810 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.005452 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.420034 B = 5134.674738 C = 6206.540048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.154 4.154 3 C -0.074 4.074 4 O 0.127 5.873 5 N -0.312 5.312 6 C -0.031 4.031 7 C 0.611 3.389 8 O -0.533 6.533 9 N -0.595 5.595 10 C 0.078 3.922 11 C 0.177 3.823 12 H 0.078 0.922 13 N -0.735 5.735 14 C -0.253 4.253 15 H 0.093 0.907 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.141 4.141 23 C 0.138 3.862 24 H 0.079 0.921 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.221 0.779 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.364 0.636 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.926 6.321 -1.126 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.155 4.155 4 O 0.049 5.951 5 N -0.011 5.011 6 C -0.190 4.190 7 C 0.397 3.603 8 O -0.411 6.411 9 N -0.328 5.328 10 C -0.048 4.048 11 C 0.065 3.935 12 H 0.096 0.904 13 N -0.376 5.376 14 C -0.382 4.382 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.575 5.575 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.180 4.180 23 C 0.035 3.965 24 H 0.097 0.903 25 C -0.222 4.222 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.237 0.763 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.197 0.803 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.138 5.611 -1.270 19.028 hybrid contribution -0.575 0.220 1.367 1.499 sum -18.713 5.831 0.097 19.600 Atomic orbital electron populations 1.20181 0.86750 1.03648 1.02997 1.21326 0.98950 0.90168 1.05455 1.25772 0.82749 1.01207 1.05754 1.84854 1.29280 1.15556 1.65376 1.74471 1.21327 0.91145 1.14136 1.23445 0.89471 0.97055 1.09001 1.16475 0.84601 0.81908 0.77306 1.90672 1.17160 1.81239 1.51981 1.48499 1.07781 1.06255 1.70267 1.23360 0.76902 1.01838 1.02678 1.21168 0.86264 0.90414 0.95627 0.90445 1.42714 1.03852 1.84297 1.06772 1.19084 0.82809 1.40513 0.95810 0.88942 1.24661 0.95228 1.01157 0.97494 1.69695 0.98403 1.54576 1.34872 0.86587 0.77108 0.78197 0.86837 1.20906 1.21589 1.20368 1.23230 0.93628 1.00010 1.01136 1.21932 0.95998 0.78865 0.99707 0.90312 1.22180 0.98821 1.01380 0.99782 0.90768 0.91227 0.89531 0.76294 0.91405 0.90487 0.80264 0.92903 0.90703 0.89577 0.89675 0.91991 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.15 -1.85 6.34 -104.12 -0.66 -2.51 16 3 C -0.07 -0.71 12.24 29.69 0.36 -0.35 16 4 O 0.13 1.68 11.18 17.23 0.19 1.87 16 5 N -0.31 -5.06 9.73 33.29 0.32 -4.73 16 6 C -0.03 -0.48 7.03 -82.53 -0.58 -1.06 16 7 C 0.61 10.23 7.66 -12.11 -0.09 10.14 16 8 O -0.53 -9.15 13.00 5.37 0.07 -9.08 16 9 N -0.59 -9.84 3.24 -163.98 -0.53 -10.37 16 10 C 0.08 1.42 5.32 -3.06 -0.02 1.41 16 11 C 0.18 3.30 3.61 -66.09 -0.24 3.07 16 12 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 13 N -0.74 -16.87 4.96 -51.64 -0.26 -17.13 16 14 C -0.25 -6.93 10.44 -15.06 -0.16 -7.09 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 18 Si 0.88 21.78 27.74 -169.99 -4.71 17.06 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 22 C -0.14 -2.13 6.13 -24.59 -0.15 -2.28 16 23 C 0.14 1.98 3.76 -66.43 -0.25 1.73 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.16 -2.18 8.71 37.15 0.32 -1.85 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.98 6.89 -51.93 -0.36 0.62 16 29 H 0.22 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 31 H 0.08 1.57 7.55 -51.93 -0.39 1.18 16 32 H 0.36 8.26 5.62 -40.82 -0.23 8.03 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.07 1.15 7.92 -51.92 -0.41 0.74 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.24 5.89 -51.93 -0.31 0.93 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -32.53 314.35 -5.67 -38.21 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.07 Total: 6.32 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.19 Total: 1.05 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.31 Total: -60.16 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.26 Total: -7.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.53 -5.67 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989653907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds