Wall clock time and date at job start Tue Mar 31 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 128.03788 * 2 1 4 4 O 1.34022 * 106.66985 * 179.97438 * 3 2 1 5 5 N 1.20905 * 111.84070 * 359.97438 * 4 3 2 6 6 C 1.30984 * 111.44289 * 0.02562 * 5 4 3 7 7 C 1.48333 * 126.93387 * 180.02562 * 6 5 4 8 8 O 1.21493 * 119.99696 * 179.97438 * 7 6 5 9 9 N 1.34772 * 120.00255 * 359.97438 * 7 6 5 10 10 C 1.47019 * 125.64722 * 359.69221 * 9 7 6 11 11 C 1.54340 * 107.26604 * 178.85185 * 10 9 7 12 12 H 1.08994 * 110.67182 * 96.52163 * 11 10 9 13 13 N 1.46497 * 110.84850 * 219.67738 * 11 10 9 14 14 C 1.36941 * 119.99561 * 268.68610 * 13 11 10 15 15 H 1.07999 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00304 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00270 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99412 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47019 * 90.00337 * 18 16 14 20 20 H 1.48501 * 109.46687 * 210.00133 * 18 16 14 21 21 H 1.48493 * 109.47308 * 330.00250 * 18 16 14 22 22 C 1.55159 * 103.01703 * 338.14033 * 11 10 9 23 23 C 1.47431 * 125.64697 * 179.97438 * 9 7 6 24 24 H 1.09002 * 110.36345 * 85.14648 * 23 9 7 25 25 C 1.52988 * 110.36792 * 322.93220 * 23 9 7 26 26 H 1.09009 * 109.46916 * 270.04111 * 1 2 3 27 27 H 1.08996 * 109.47465 * 30.04280 * 1 2 3 28 28 H 1.08998 * 109.46863 * 150.04660 * 1 2 3 29 29 H 1.08003 * 126.66497 * 359.94051 * 3 2 1 30 30 H 1.08998 * 109.88541 * 298.39210 * 10 9 7 31 31 H 1.08995 * 109.88348 * 59.56134 * 10 9 7 32 32 H 0.96992 * 120.00573 * 88.69400 * 13 11 10 33 33 H 0.96999 * 119.99582 * 179.97438 * 17 16 14 34 34 H 1.09007 * 111.00318 * 277.23139 * 22 11 10 35 35 H 1.08998 * 111.00579 * 153.38303 * 22 11 10 36 36 H 1.09007 * 109.47724 * 61.45015 * 25 23 9 37 37 H 1.09002 * 109.47155 * 181.45302 * 25 23 9 38 38 H 1.09006 * 109.47106 * 301.45560 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5774 0.0006 5 7 3.5989 -0.6316 0.0014 6 6 2.3837 -1.1205 0.0010 7 6 1.9993 -2.5532 0.0022 8 8 0.8257 -2.8672 0.0021 9 7 2.9519 -3.5065 0.0035 10 6 4.4027 -3.2681 -0.0026 11 6 5.0937 -4.6477 0.0312 12 1 5.3694 -4.9647 -0.9745 13 7 6.2695 -4.6207 0.9047 14 6 7.5004 -4.3178 0.3866 15 1 7.6043 -4.0984 -0.6658 16 6 8.6147 -4.2926 1.2140 17 7 9.7977 -4.0010 0.7162 18 14 8.4349 -4.6712 3.0344 19 1 8.6112 -6.1290 3.2566 20 1 9.4665 -3.9256 3.7993 21 1 7.0842 -4.2602 3.4945 22 6 3.9958 -5.5743 0.6172 23 6 2.7118 -4.9611 0.0054 24 1 2.5648 -5.3226 -1.0124 25 6 1.4959 -5.2989 0.8703 26 1 -0.3633 0.0007 1.0278 27 1 -0.3634 0.8895 -0.5145 28 1 -0.3633 -0.8904 -0.5131 29 1 2.0559 2.1075 -0.0009 30 1 4.6864 -2.7314 -0.9078 31 1 4.6873 -2.6914 0.8774 32 1 6.1762 -4.8174 1.8498 33 1 10.5762 -3.9830 1.2945 34 1 3.9758 -5.5165 1.7055 35 1 4.1344 -6.6031 0.2847 36 1 0.6106 -4.8149 0.4577 37 1 1.3473 -6.3787 0.8823 38 1 1.6634 -4.9439 1.8872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989653907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:53 Heat of formation + Delta-G solvation = 28.651383 kcal Electronic energy + Delta-G solvation = -22180.360020 eV Core-core repulsion = 18833.132274 eV Total energy + Delta-G solvation = -3347.227746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.14876 -41.34959 -38.94373 -36.18908 -35.70369 -33.95583 -33.49672 -32.36905 -30.62831 -29.10076 -26.90401 -26.15253 -25.26311 -22.86879 -22.69593 -21.95880 -20.54876 -19.72774 -18.88168 -18.57751 -17.88943 -17.46411 -16.72599 -16.32773 -15.75263 -15.33946 -15.11119 -14.99115 -14.57434 -14.38628 -14.24113 -14.11348 -13.79113 -13.57141 -13.34715 -13.14098 -13.06464 -12.91745 -12.47817 -12.29789 -12.23631 -12.03197 -11.87975 -11.64378 -11.36543 -11.12320 -10.92548 -10.40636 -9.81865 -9.42756 -8.04841 -5.40857 0.09420 0.71423 1.36845 1.39748 1.46204 1.65179 1.98896 2.30561 2.45876 2.81401 3.22888 3.32393 3.55477 3.69537 3.73355 3.88921 4.06222 4.08719 4.20511 4.33189 4.36436 4.45372 4.66722 4.76043 4.78477 4.80145 4.82448 4.94844 5.02596 5.05052 5.15824 5.21759 5.33800 5.45835 5.73261 6.18054 6.25117 6.79295 7.02631 7.12044 7.75688 7.95027 9.16204 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.005452 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.420034 B = 5134.674738 C = 6206.540048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.170 4.170 3 C -0.043 4.043 4 O 0.124 5.876 5 N -0.352 5.352 6 C -0.063 4.063 7 C 0.605 3.395 8 O -0.541 6.541 9 N -0.599 5.599 10 C 0.098 3.902 11 C 0.168 3.832 12 H 0.074 0.926 13 N -0.737 5.737 14 C -0.237 4.237 15 H 0.060 0.940 16 C -0.056 4.056 17 N -0.980 5.980 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.258 1.258 22 C -0.126 4.126 23 C 0.134 3.866 24 H 0.093 0.907 25 C -0.154 4.154 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.277 0.723 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.368 0.632 33 H 0.259 0.741 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.300 6.677 -0.126 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.175 4.175 3 C -0.124 4.124 4 O 0.046 5.954 5 N -0.051 5.051 6 C -0.220 4.220 7 C 0.392 3.608 8 O -0.418 6.418 9 N -0.332 5.332 10 C -0.028 4.028 11 C 0.058 3.942 12 H 0.092 0.908 13 N -0.379 5.379 14 C -0.367 4.367 15 H 0.078 0.922 16 C -0.248 4.248 17 N -0.629 5.629 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.183 1.183 22 C -0.165 4.165 23 C 0.032 3.968 24 H 0.111 0.889 25 C -0.211 4.211 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.293 0.707 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.202 0.798 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.586 5.938 -0.280 21.427 hybrid contribution 0.071 0.223 0.937 0.965 sum -20.515 6.161 0.656 21.430 Atomic orbital electron populations 1.20213 0.85051 1.04240 1.03519 1.21724 1.00166 0.89485 1.06115 1.26763 0.80565 1.02896 1.02126 1.84795 1.31216 1.14610 1.64763 1.74477 1.22185 0.92475 1.16008 1.23649 0.90508 0.97348 1.10485 1.16743 0.84512 0.82597 0.76907 1.90659 1.17216 1.81648 1.52314 1.48541 1.06778 1.07353 1.70565 1.22863 0.78281 1.00789 1.00870 1.21354 0.85984 0.91625 0.95218 0.90765 1.42645 1.03535 1.84336 1.07408 1.19028 0.84665 1.38554 0.94476 0.92165 1.25445 0.94834 1.02058 1.02416 1.69872 0.99382 1.57029 1.36640 0.85468 0.77646 0.78211 0.80758 1.19860 1.22367 1.18250 1.23160 0.91865 1.00390 1.01042 1.22134 0.96218 0.77611 1.00802 0.88936 1.22087 0.97362 1.03061 0.98629 0.90217 0.87757 0.91766 0.70746 0.92905 0.92776 0.79821 0.93226 0.90581 0.87083 0.90945 0.89144 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.17 -3.76 6.34 -19.54 -0.12 -3.89 16 3 C -0.04 -0.71 12.24 67.14 0.82 0.11 16 4 O 0.12 3.17 11.18 71.82 0.80 3.97 16 5 N -0.35 -11.55 9.73 -49.51 -0.48 -12.03 16 6 C -0.06 -1.94 7.03 42.96 0.30 -1.64 16 7 C 0.60 20.29 7.66 86.93 0.67 20.96 16 8 O -0.54 -18.39 13.00 -3.69 -0.05 -18.44 16 9 N -0.60 -19.71 3.24 -791.02 -2.56 -22.27 16 10 C 0.10 3.65 5.32 86.73 0.46 4.12 16 11 C 0.17 6.23 3.61 46.19 0.17 6.40 16 12 H 0.07 2.80 8.09 -2.39 -0.02 2.78 16 13 N -0.74 -33.62 4.96 -317.31 -1.57 -35.19 16 14 C -0.24 -13.24 10.44 84.03 0.88 -12.37 16 15 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 16 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 17 N -0.98 -62.27 13.97 21.65 0.30 -61.97 16 18 Si 0.95 45.08 27.74 68.60 1.90 46.98 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.26 -11.20 6.52 99.48 0.65 -10.55 16 22 C -0.13 -3.54 6.13 31.98 0.20 -3.34 16 23 C 0.13 3.65 3.76 45.45 0.17 3.82 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 25 C -0.15 -3.76 8.71 71.98 0.63 -3.13 16 26 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.38 6.89 -2.39 -0.02 1.37 16 29 H 0.28 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 31 H 0.05 2.27 7.55 -2.39 -0.02 2.25 16 32 H 0.37 16.16 5.62 -92.71 -0.52 15.64 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.08 2.16 7.92 -2.38 -0.02 2.14 16 35 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 1.99 5.89 -2.38 -0.01 1.98 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.16 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -73.71 314.35 4.19 -69.52 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.50 Total: 21.68 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.35 Total: 7.75 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -4.32 Total: -131.47 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.75 Total: -14.47 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -73.71 4.19 -69.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989653907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.172 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds