Wall clock time and date at job start Tue Mar 31 2020 01:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35321 * 126.66299 * 2 1 4 4 C 1.42272 * 103.91764 * 180.11288 * 3 2 1 5 5 C 1.48339 * 126.93670 * 179.91263 * 4 3 2 6 6 O 1.21497 * 119.99729 * 353.82902 * 5 4 3 7 7 N 1.34773 * 119.99711 * 174.10385 * 5 4 3 8 8 C 1.46931 * 120.62894 * 184.28392 * 7 5 4 9 9 C 1.53624 * 108.54225 * 126.36872 * 8 7 5 10 10 C 1.53039 * 109.23921 * 54.86144 * 9 8 7 11 11 N 1.46502 * 109.46080 * 178.48989 * 10 9 8 12 12 C 1.36935 * 119.99905 * 275.06837 * 11 10 9 13 13 H 1.08000 * 119.99809 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99996 * 179.97438 * 12 11 10 15 15 N 1.31612 * 119.99837 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99905 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47280 * 89.99718 * 16 14 12 18 18 H 1.48492 * 109.47062 * 209.99709 * 16 14 12 19 19 H 1.48495 * 109.47013 * 329.99847 * 16 14 12 20 20 C 1.53042 * 109.53600 * 298.50957 * 10 9 8 21 21 C 1.46924 * 120.63301 * 4.56856 * 7 5 4 22 22 N 1.30979 * 106.12601 * 359.65118 * 4 3 2 23 23 O 1.20902 * 111.44093 * 0.22504 * 22 4 3 24 24 H 1.08997 * 109.47191 * 180.25580 * 1 2 3 25 25 H 1.09002 * 109.47009 * 300.25587 * 1 2 3 26 26 H 1.09000 * 109.47317 * 60.25158 * 1 2 3 27 27 H 1.07994 * 128.04479 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.58668 * 246.20755 * 8 7 5 29 29 H 1.09003 * 109.58041 * 6.63018 * 8 7 5 30 30 H 1.09000 * 109.63401 * 294.86713 * 9 8 7 31 31 H 1.08995 * 109.43075 * 174.72487 * 9 8 7 32 32 H 1.09002 * 109.45249 * 58.52327 * 10 9 8 33 33 H 0.97004 * 119.99819 * 95.06585 * 11 10 9 34 34 H 0.97005 * 120.00001 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.49866 * 301.41282 * 20 10 9 36 36 H 1.09002 * 109.52628 * 181.33705 * 20 10 9 37 37 H 1.08998 * 109.58817 * 353.37094 * 21 7 5 38 38 H 1.09002 * 109.58322 * 113.65493 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 -0.0027 5 6 4.9076 1.2842 -0.0057 6 8 4.9036 2.4939 -0.1191 7 7 6.0756 0.6222 0.1118 8 6 7.3455 1.3552 0.2047 9 6 8.0940 0.8788 1.4588 10 6 8.2495 -0.6427 1.4058 11 7 8.9945 -1.0985 2.5820 12 6 10.3637 -1.0883 2.5716 13 1 10.8945 -0.7446 1.6961 14 6 11.0696 -1.5197 3.6863 15 7 12.3856 -1.5103 3.6761 16 14 10.1515 -2.1148 5.2004 17 1 9.9145 -3.5769 5.0928 18 1 10.9610 -1.8325 6.4129 19 1 8.8491 -1.4083 5.2991 20 6 6.8667 -1.2983 1.3924 21 6 6.1037 -0.8465 0.1433 22 7 3.4761 -0.7656 0.0036 23 8 2.3073 -1.0749 0.0052 24 1 -0.3633 -1.0276 0.0046 25 1 -0.3633 0.5178 0.8877 26 1 -0.3634 0.5099 -0.8922 27 1 2.0302 2.1272 0.0004 28 1 7.9480 1.1562 -0.6815 29 1 7.1456 2.4241 0.2807 30 1 7.5301 1.1561 2.3494 31 1 9.0791 1.3442 1.4919 32 1 8.7920 -0.9209 0.5022 33 1 8.5177 -1.4075 3.3683 34 1 12.8789 -1.8121 4.4549 35 1 6.3143 -1.0006 2.2837 36 1 6.9777 -2.3826 1.3786 37 1 5.0844 -1.2309 0.1787 38 1 6.6049 -1.2215 -0.7491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989909029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:43 Heat of formation + Delta-G solvation = 31.803885 kcal Electronic energy + Delta-G solvation = -21769.998139 eV Core-core repulsion = 18422.907095 eV Total energy + Delta-G solvation = -3347.091044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -46.17277 -41.30325 -38.94340 -36.42351 -35.25250 -34.53558 -33.83974 -32.08411 -31.63216 -28.74675 -27.22005 -25.77396 -24.22599 -24.05771 -23.26715 -21.70765 -20.44261 -19.50429 -18.92848 -18.52865 -17.98603 -17.12868 -16.76124 -16.38692 -15.94314 -15.49810 -15.06887 -14.94246 -14.74653 -14.56555 -14.43034 -14.24701 -14.08631 -13.93671 -13.36164 -13.06053 -12.95141 -12.78454 -12.46506 -12.25131 -12.07189 -11.94493 -11.81360 -11.60285 -11.58005 -11.13221 -10.97217 -10.39853 -9.90538 -9.35421 -8.04075 -5.37877 -0.02245 0.66154 1.35966 1.38789 1.45923 1.58853 1.94290 2.04269 2.46468 2.72742 3.26494 3.36563 3.47186 3.70927 3.91082 3.97964 4.04740 4.06740 4.26411 4.28257 4.32996 4.46672 4.66624 4.72669 4.80066 4.81423 4.82819 4.87385 4.96858 5.02057 5.15017 5.27411 5.36909 5.47147 5.75128 6.09903 6.19907 6.71552 7.05163 7.05315 7.80859 8.00182 9.17393 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.003938 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.674032 B = 7107.852421 C = 7677.643018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.202 4.202 4 C -0.039 4.039 5 C 0.590 3.410 6 O -0.560 6.560 7 N -0.592 5.592 8 C 0.120 3.880 9 C -0.139 4.139 10 C 0.176 3.824 11 N -0.751 5.751 12 C -0.228 4.228 13 H 0.060 0.940 14 C -0.064 4.064 15 N -0.984 5.984 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.297 1.297 19 H -0.257 1.257 20 C -0.129 4.129 21 C 0.085 3.915 22 N -0.343 5.343 23 O 0.116 5.884 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.192 0.808 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.364 0.636 34 H 0.258 0.742 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.763 1.895 -9.012 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 C -0.225 4.225 4 C -0.196 4.196 5 C 0.377 3.623 6 O -0.438 6.438 7 N -0.323 5.323 8 C -0.002 4.002 9 C -0.180 4.180 10 C 0.068 3.932 11 N -0.394 5.394 12 C -0.359 4.359 13 H 0.078 0.922 14 C -0.255 4.255 15 N -0.634 5.634 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.224 1.224 19 H -0.182 1.182 20 C -0.167 4.167 21 C -0.037 4.037 22 N -0.047 5.047 23 O 0.044 5.956 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.209 0.791 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.197 0.803 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.629 1.553 -9.153 29.147 hybrid contribution 0.372 0.512 1.179 1.338 sum -27.257 2.066 -7.974 28.475 Atomic orbital electron populations 1.20692 0.79774 1.06550 1.06097 1.25241 0.98012 0.83855 0.99840 1.22649 0.88719 1.02863 1.08248 1.23431 0.96722 0.90658 1.08813 1.17325 0.82298 0.85997 0.76634 1.90745 1.86952 1.14115 1.51998 1.48130 1.05865 1.08475 1.69848 1.21771 0.82847 0.97081 0.98505 1.22511 0.99705 0.98877 0.96885 1.20403 0.91410 0.91706 0.89705 1.42813 1.02518 1.78698 1.15328 1.19033 0.82435 1.34690 0.99766 0.92246 1.25477 0.96015 1.02635 1.01383 1.69877 1.06753 1.55514 1.31273 0.85423 0.78381 0.78700 0.79328 1.20181 1.22376 1.18213 1.22086 0.94944 1.01596 0.98119 1.22671 1.05191 0.77584 0.98298 1.73773 0.97822 1.14994 1.18117 1.84776 1.11059 1.34514 1.65204 0.88080 0.87151 0.86938 0.79081 0.89650 0.89467 0.93132 0.91832 0.92988 0.80301 0.93355 0.92339 0.89369 0.84802 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.44 71.23 0.74 0.57 16 2 C -0.01 -0.08 7.47 25.01 0.19 0.11 16 3 C -0.20 -3.65 10.93 22.60 0.25 -3.40 16 4 C -0.04 -0.98 6.95 42.96 0.30 -0.68 16 5 C 0.59 18.00 7.72 86.93 0.67 18.67 16 6 O -0.56 -19.73 16.39 -3.70 -0.06 -19.79 16 7 N -0.59 -17.35 2.97 -820.91 -2.43 -19.79 16 8 C 0.12 3.63 6.45 86.51 0.56 4.19 16 9 C -0.14 -4.93 5.67 30.82 0.17 -4.76 16 10 C 0.18 6.61 2.73 45.02 0.12 6.73 16 11 N -0.75 -35.06 4.92 -322.80 -1.59 -36.65 16 12 C -0.23 -12.98 10.41 84.03 0.87 -12.11 16 13 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 14 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 15 N -0.98 -63.40 13.97 21.65 0.30 -63.10 16 16 Si 0.95 45.96 27.74 68.60 1.90 47.87 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 20 C -0.13 -3.89 5.55 30.67 0.17 -3.72 16 21 C 0.09 2.25 6.33 86.36 0.55 2.80 16 22 N -0.34 -7.87 8.50 -49.52 -0.42 -8.29 16 23 O 0.12 2.07 11.18 71.89 0.80 2.87 16 24 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 2.70 7.03 -2.39 -0.02 2.68 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.36 16.47 5.66 -92.71 -0.52 15.94 16 34 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.14 3.37 3.75 -47.04 -0.18 3.19 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.21 314.77 3.90 -70.31 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.33 Total: 21.48 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.06 Total: 5.09 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -4.14 Total: -127.83 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.74 Total: -16.92 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.87 kcal Total: -74.21 3.90 -70.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989909029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.116 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds