Wall clock time and date at job start Tue Mar 31 2020 01:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35307 * 126.66720 * 2 1 4 4 C 1.42276 * 103.92387 * 180.02562 * 3 2 1 5 5 C 1.48332 * 126.94134 * 179.73829 * 4 3 2 6 6 O 1.21488 * 119.99973 * 353.66454 * 5 4 3 7 7 N 1.34774 * 119.99763 * 173.66910 * 5 4 3 8 8 C 1.46922 * 120.63379 * 4.35667 * 7 5 4 9 9 C 1.52762 * 109.01226 * 233.58834 * 8 7 5 10 10 C 1.53041 * 109.38297 * 305.58985 * 9 8 7 11 11 C 1.53047 * 109.53909 * 61.23736 * 10 9 8 12 12 H 1.09000 * 109.49717 * 58.58622 * 11 10 9 13 13 N 1.46495 * 109.52433 * 178.66784 * 11 10 9 14 14 C 1.36941 * 119.99998 * 204.85371 * 13 11 10 15 15 H 1.07998 * 119.99708 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99837 * 180.02562 * 14 13 11 17 17 N 1.31626 * 119.99652 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47016 * 90.00146 * 18 16 14 20 20 H 1.48502 * 109.46785 * 209.99910 * 18 16 14 21 21 H 1.48499 * 109.47092 * 329.99930 * 18 16 14 22 22 C 1.46930 * 120.62750 * 184.64321 * 7 5 4 23 23 N 1.30992 * 106.12010 * 0.02562 * 4 3 2 24 24 O 1.20901 * 111.43883 * 359.97438 * 23 4 3 25 25 H 1.08996 * 109.47040 * 89.99601 * 1 2 3 26 26 H 1.09002 * 109.47419 * 209.99934 * 1 2 3 27 27 H 1.09001 * 109.47053 * 329.99700 * 1 2 3 28 28 H 1.07998 * 128.04363 * 0.07170 * 3 2 1 29 29 H 1.08997 * 109.58770 * 353.42365 * 8 7 5 30 30 H 1.09000 * 109.58737 * 113.84810 * 8 7 5 31 31 H 1.08997 * 109.56505 * 185.55753 * 9 8 7 32 32 H 1.08998 * 109.38438 * 65.51248 * 9 8 7 33 33 H 1.08996 * 109.45996 * 301.21980 * 10 9 8 34 34 H 1.08994 * 109.46296 * 181.25927 * 10 9 8 35 35 H 0.97006 * 120.00111 * 24.85695 * 13 11 10 36 36 H 0.96999 * 119.99949 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.58575 * 246.15117 * 22 7 5 38 38 H 1.08998 * 109.58557 * 6.58205 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0853 0.0000 4 6 3.6271 0.5353 -0.0006 5 6 4.9076 1.2840 -0.0063 6 8 4.9039 2.4928 -0.1272 7 7 6.0751 0.6232 0.1225 8 6 6.1027 -0.8449 0.1738 9 6 6.8598 -1.2850 1.4256 10 6 8.2424 -0.6291 1.4398 11 6 8.0866 0.8929 1.4775 12 1 7.5180 1.1786 2.3625 13 7 9.4100 1.5196 1.5232 14 6 9.5567 2.7713 2.0590 15 1 8.6969 3.2962 2.4481 16 6 10.8106 3.3652 2.1018 17 7 10.9517 4.5681 2.6172 18 14 12.2977 2.4575 1.4280 19 1 12.4664 2.7835 -0.0109 20 1 13.5117 2.8731 2.1754 21 1 12.0970 0.9944 1.5839 22 6 7.3440 1.3574 0.2207 23 7 3.4760 -0.7659 -0.0015 24 8 2.3072 -1.0751 -0.0010 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.0302 2.1271 0.0011 29 1 5.0832 -1.2285 0.2114 30 1 6.6086 -1.2320 -0.7107 31 1 6.9715 -2.3692 1.4222 32 1 6.3030 -0.9792 2.3113 33 1 8.7897 -0.9159 0.5419 34 1 8.7922 -0.9598 2.3210 35 1 10.1823 1.0479 1.1740 36 1 11.8278 4.9834 2.6468 37 1 7.9532 1.1537 -0.6599 38 1 7.1431 2.4266 0.2893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998459932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:24 Heat of formation + Delta-G solvation = 30.709548 kcal Electronic energy + Delta-G solvation = -21868.584874 eV Core-core repulsion = 18521.446376 eV Total energy + Delta-G solvation = -3347.138498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -46.18597 -41.31440 -38.92727 -36.50410 -35.23054 -34.55921 -33.80400 -33.04731 -30.60975 -28.74050 -27.40929 -25.78351 -24.88535 -23.61210 -23.18938 -21.78528 -20.27210 -19.60081 -18.94421 -18.54949 -18.01429 -17.18264 -16.67978 -16.41793 -15.78188 -15.59216 -15.42368 -14.98021 -14.81275 -14.46437 -14.34789 -14.21274 -13.99211 -13.93003 -13.62475 -13.13608 -12.97645 -12.67375 -12.58783 -12.12162 -12.02468 -11.87340 -11.65841 -11.60340 -11.46848 -11.29535 -11.11368 -10.40952 -9.99096 -9.35226 -8.07299 -5.44399 -0.03813 0.64891 1.35266 1.40398 1.47550 1.57744 1.93684 2.02604 2.44948 2.71483 3.22956 3.36772 3.47504 3.76727 3.86193 3.94394 3.98777 4.14482 4.20595 4.25570 4.31262 4.57550 4.62397 4.74766 4.79643 4.81061 4.85199 4.91776 5.00283 5.02405 5.25925 5.26882 5.33076 5.39487 5.70162 6.13452 6.16356 6.74258 7.00695 7.03501 7.72366 7.95451 9.14314 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034100 B = 0.003981 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.908508 B = 7031.945590 C = 7589.000439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.002 4.002 3 C -0.207 4.207 4 C -0.037 4.037 5 C 0.581 3.419 6 O -0.570 6.570 7 N -0.589 5.589 8 C 0.072 3.928 9 C -0.118 4.118 10 C -0.121 4.121 11 C 0.171 3.829 12 H 0.031 0.969 13 N -0.741 5.741 14 C -0.242 4.242 15 H 0.046 0.954 16 C -0.062 4.062 17 N -0.984 5.984 18 Si 0.963 3.037 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.244 1.244 22 C 0.103 3.897 23 N -0.336 5.336 24 O 0.122 5.878 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.186 0.814 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.372 0.628 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.465 -18.717 -7.185 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.230 4.230 4 C -0.194 4.194 5 C 0.367 3.633 6 O -0.448 6.448 7 N -0.321 5.321 8 C -0.049 4.049 9 C -0.156 4.156 10 C -0.159 4.159 11 C 0.062 3.938 12 H 0.050 0.950 13 N -0.385 5.385 14 C -0.373 4.373 15 H 0.064 0.936 16 C -0.254 4.254 17 N -0.633 5.633 18 Si 0.789 3.211 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.168 1.168 22 C -0.022 4.022 23 N -0.040 5.040 24 O 0.049 5.951 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.203 0.797 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.206 0.794 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.591 -18.883 -7.132 28.835 hybrid contribution 1.121 1.430 -0.120 1.821 sum -19.471 -17.453 -7.252 27.135 Atomic orbital electron populations 1.20697 0.79570 1.06665 1.06088 1.25187 0.97966 0.83636 0.99733 1.22658 0.88986 1.02888 1.08447 1.23304 0.96263 0.90822 1.08990 1.17548 0.82776 0.86026 0.76903 1.90777 1.87041 1.14990 1.51995 1.48183 1.05381 1.08967 1.69603 1.22776 1.05698 0.76868 0.99592 1.21756 0.94463 1.02261 0.97168 1.21812 0.98360 0.92343 1.03395 1.20595 0.85434 0.93597 0.94213 0.95033 1.42617 1.05133 1.17035 1.73677 1.18961 0.94231 0.92424 1.31634 0.93639 1.25617 1.00858 0.97338 1.01572 1.69914 1.24008 1.16874 1.52508 0.85305 0.78347 0.79578 0.77889 1.20352 1.22045 1.16776 1.22379 0.83095 0.96325 1.00358 1.73753 0.97795 1.14414 1.17993 1.84750 1.10992 1.34252 1.65105 0.87169 0.87612 0.87213 0.79671 0.85010 0.89647 0.86777 0.92581 0.90261 0.90817 0.79412 0.93139 0.90717 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 71.24 0.74 0.50 16 2 C 0.00 -0.03 7.47 25.01 0.19 0.16 16 3 C -0.21 -4.42 10.93 22.60 0.25 -4.17 16 4 C -0.04 -1.04 6.95 42.96 0.30 -0.74 16 5 C 0.58 21.26 7.72 86.93 0.67 21.93 16 6 O -0.57 -25.50 16.39 -3.68 -0.06 -25.56 16 7 N -0.59 -20.05 2.98 -822.61 -2.45 -22.50 16 8 C 0.07 1.80 6.30 86.22 0.54 2.34 16 9 C -0.12 -2.73 6.06 30.53 0.19 -2.55 16 10 C -0.12 -3.49 5.36 30.62 0.16 -3.33 16 11 C 0.17 6.88 2.92 45.07 0.13 7.02 16 12 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 13 N -0.74 -35.54 4.93 -322.57 -1.59 -37.13 16 14 C -0.24 -14.42 10.41 84.03 0.87 -13.54 16 15 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 16 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 17 N -0.98 -65.04 13.97 21.65 0.30 -64.73 16 18 Si 0.96 45.86 27.74 68.60 1.90 47.76 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 H -0.24 -10.19 6.52 99.48 0.65 -9.54 16 22 C 0.10 4.13 6.01 86.36 0.52 4.65 16 23 N -0.34 -7.89 8.51 -49.50 -0.42 -8.31 16 24 O 0.12 2.18 11.18 71.85 0.80 2.98 16 25 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.19 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.13 3.13 3.77 -45.84 -0.17 2.96 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.37 16.49 5.66 -92.70 -0.52 15.96 16 36 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.05 2.54 7.03 -2.39 -0.02 2.52 16 Total: -1.00 -80.47 314.73 3.85 -76.61 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.34 Total: 21.92 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.03 Total: 8.96 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -4.16 Total: -132.67 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.74 Total: -22.57 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -80.47 3.85 -76.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998459932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.322 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds