Wall clock time and date at job start Tue Mar 31 2020 01:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41267 * 126.70264 * 2 1 4 4 C 1.36819 * 103.84343 * 179.97438 * 3 2 1 5 5 C 1.47514 * 126.94158 * 179.73754 * 4 3 2 6 6 O 1.21589 * 120.00116 * 353.49537 * 5 4 3 7 7 N 1.34775 * 120.00367 * 173.49346 * 5 4 3 8 8 C 1.46929 * 120.62689 * 4.75613 * 7 5 4 9 9 C 1.53193 * 108.77569 * 233.58150 * 8 7 5 10 10 C 1.53032 * 109.31455 * 305.36949 * 9 8 7 11 11 C 1.53041 * 109.54210 * 61.36139 * 10 9 8 12 12 H 1.09001 * 109.49752 * 58.61542 * 11 10 9 13 13 N 1.46500 * 109.50181 * 178.68446 * 11 10 9 14 14 C 1.36934 * 119.99922 * 205.00464 * 13 11 10 15 15 H 1.07998 * 120.00240 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00370 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 59.99984 * 18 16 14 20 20 H 1.48498 * 109.47386 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47247 * 300.00453 * 18 16 14 22 22 C 1.46924 * 120.63312 * 184.47393 * 7 5 4 23 23 O 1.34642 * 106.11924 * 359.97438 * 4 3 2 24 24 N 1.20890 * 111.46291 * 0.02562 * 23 4 3 25 25 H 1.09006 * 109.46919 * 90.00634 * 1 2 3 26 26 H 1.09007 * 109.47003 * 209.99693 * 1 2 3 27 27 H 1.08997 * 109.47511 * 329.99923 * 1 2 3 28 28 H 1.07995 * 128.07701 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.58628 * 353.37346 * 8 7 5 30 30 H 1.09004 * 109.58204 * 113.65416 * 8 7 5 31 31 H 1.09004 * 109.49392 * 65.31656 * 9 8 7 32 32 H 1.09002 * 109.49726 * 185.41516 * 9 8 7 33 33 H 1.08999 * 109.46191 * 181.38298 * 10 9 8 34 34 H 1.09007 * 109.46101 * 301.35689 * 10 9 8 35 35 H 0.97004 * 119.99727 * 24.99888 * 13 11 10 36 36 H 0.96998 * 120.00997 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.58850 * 246.20445 * 22 7 5 38 38 H 1.08997 * 109.58534 * 6.62938 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 0.0006 5 6 4.8870 1.3431 -0.0045 6 8 4.8860 2.5526 -0.1293 7 7 6.0529 0.6805 0.1290 8 6 6.0783 -0.7879 0.1763 9 6 6.8308 -1.2277 1.4360 10 6 8.2145 -0.5743 1.4532 11 6 8.0614 0.9480 1.4888 12 1 7.4914 1.2357 2.3723 13 7 9.3860 1.5718 1.5369 14 6 9.5348 2.8224 2.0744 15 1 8.6755 3.3491 2.4625 16 6 10.7901 3.4133 2.1204 17 7 11.8372 2.7717 1.6469 18 14 10.9930 5.1196 2.8529 19 1 10.5510 5.1054 4.2706 20 1 12.4207 5.5218 2.7831 21 1 10.1683 6.0884 2.0870 22 6 7.3234 1.4124 0.2240 23 8 3.4540 -0.7360 0.0015 24 7 2.2848 -1.0432 0.0010 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 2.0678 2.1747 -0.0004 29 1 5.0580 -1.1701 0.2079 30 1 6.5856 -1.1731 -0.7082 31 1 6.2720 -0.9196 2.3198 32 1 6.9405 -2.3122 1.4342 33 1 8.7614 -0.9050 2.3361 34 1 8.7635 -0.8629 0.5567 35 1 10.1578 1.0988 1.1880 36 1 12.7143 3.1846 1.6787 37 1 7.9324 1.2029 -0.6554 38 1 7.1248 2.4822 0.2871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998529173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:14 Heat of formation + Delta-G solvation = 48.508315 kcal Electronic energy + Delta-G solvation = -21874.234977 eV Core-core repulsion = 18527.868292 eV Total energy + Delta-G solvation = -3346.366685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -45.18709 -39.94646 -37.47378 -35.23327 -34.47279 -32.58709 -31.99123 -31.16448 -29.08210 -28.27842 -25.88419 -24.10852 -23.37766 -22.63813 -21.90373 -20.33981 -19.39176 -17.96829 -17.57067 -17.11299 -16.50957 -15.97416 -15.15756 -14.61374 -14.42458 -14.26009 -13.83993 -13.70161 -13.62821 -13.46787 -13.40251 -13.01685 -12.73510 -12.45919 -12.27299 -11.61028 -11.36520 -11.02244 -10.84589 -10.65357 -10.60509 -10.32319 -10.26815 -10.17790 -9.89440 -9.84558 -9.69010 -9.12566 -8.48418 -7.04107 -5.81243 -3.11478 0.69974 1.85225 2.46569 2.97338 3.14555 3.44555 3.48620 3.50119 3.81650 4.16717 4.55800 4.63173 4.77902 4.99024 5.06108 5.12933 5.14409 5.23993 5.34150 5.43833 5.45811 5.53751 5.74060 5.78254 5.83600 5.88040 6.00766 6.13016 6.16416 6.31467 6.40877 6.60746 6.75801 6.92968 7.37161 7.68392 7.85680 8.08367 8.36646 9.48602 10.01828 10.37194 11.40778 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.004000 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.883268 B = 6998.950231 C = 7694.496873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.158 4.158 4 C -0.069 4.069 5 C 0.594 3.406 6 O -0.514 6.514 7 N -0.589 5.589 8 C 0.092 3.908 9 C -0.128 4.128 10 C -0.127 4.127 11 C 0.168 3.832 12 H 0.053 0.947 13 N -0.716 5.716 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.091 3.909 23 O 0.112 5.888 24 N -0.355 5.355 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.182 0.818 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 -9.493 -3.743 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.181 4.181 4 C -0.135 4.135 5 C 0.378 3.622 6 O -0.391 6.391 7 N -0.321 5.321 8 C -0.031 4.031 9 C -0.167 4.167 10 C -0.166 4.166 11 C 0.057 3.943 12 H 0.071 0.929 13 N -0.357 5.357 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.033 4.033 23 O 0.044 5.956 24 N -0.061 5.061 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.200 0.800 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.196 -9.960 -3.712 21.942 hybrid contribution 0.400 1.570 0.204 1.633 sum -18.796 -8.390 -3.507 20.880 Atomic orbital electron populations 1.20201 0.85406 1.04062 1.03604 1.23611 0.99241 0.88375 1.03349 1.22862 0.90002 1.01721 1.03501 1.24470 0.97621 0.83672 1.07713 1.16758 0.80978 0.86116 0.78377 1.90879 1.85483 1.12271 1.50442 1.48268 1.06747 1.07564 1.69505 1.22264 1.02341 0.79181 0.99291 1.21866 0.96951 1.00445 0.97418 1.21851 0.95735 0.96403 1.02581 1.20587 0.88444 0.90736 0.94557 0.92905 1.42372 1.02808 1.18067 1.72431 1.19229 0.93529 0.92659 1.32322 0.91038 1.24751 0.95581 0.98712 1.01467 1.69644 0.98831 1.38091 1.51352 0.86262 0.76685 0.84218 0.79012 1.21168 1.21658 1.21064 1.23094 0.80960 0.98141 1.01063 1.85074 1.20647 1.22333 1.67533 1.73695 0.89979 1.24789 1.17622 0.89959 0.90328 0.89726 0.80035 0.88497 0.90603 0.91525 0.90617 0.91194 0.91851 0.77972 0.93344 0.91314 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.47 36.01 0.38 -0.11 16 2 C 0.01 0.13 7.31 -82.16 -0.60 -0.47 16 3 C -0.16 -1.82 10.92 -38.95 -0.43 -2.25 16 4 C -0.07 -0.92 6.99 -36.32 -0.25 -1.18 16 5 C 0.59 9.53 7.69 -12.48 -0.10 9.43 16 6 O -0.51 -9.90 16.35 5.29 0.09 -9.82 16 7 N -0.59 -9.04 2.97 -173.74 -0.52 -9.56 16 8 C 0.09 1.12 6.33 -3.71 -0.02 1.09 16 9 C -0.13 -1.54 6.08 -26.62 -0.16 -1.71 16 10 C -0.13 -1.94 5.35 -26.69 -0.14 -2.09 16 11 C 0.17 3.24 2.94 -67.58 -0.20 3.04 16 12 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 13 N -0.72 -17.40 5.12 -53.09 -0.27 -17.68 16 14 C -0.25 -6.76 9.93 -15.06 -0.15 -6.91 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.09 1.67 6.03 -3.49 -0.02 1.65 16 23 O 0.11 1.40 7.75 15.55 0.12 1.52 16 24 N -0.35 -4.37 12.04 33.52 0.40 -3.97 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.09 3.82 -54.72 -0.21 0.88 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.39 9.87 7.80 -40.82 -0.32 9.55 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.98 7.03 -51.93 -0.37 1.61 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -31.57 317.93 -6.56 -38.13 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.09 Total: 6.01 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.79 Total: 0.16 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.34 Total: -58.14 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.21 Total: -8.30 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.57 -6.56 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998529173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.640 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds