Wall clock time and date at job start Tue Mar 31 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33693 * 126.27259 * 2 1 4 4 C 1.30622 * 108.99662 * 179.97438 * 3 2 1 5 5 O 1.33670 * 109.15201 * 359.75258 * 4 3 2 6 6 C 1.35343 * 107.68174 * 0.39793 * 5 4 3 7 7 C 1.46723 * 126.64116 * 179.87214 * 6 5 4 8 8 O 1.21680 * 120.00327 * 185.48142 * 7 6 5 9 9 N 1.34781 * 119.99774 * 5.48182 * 7 6 5 10 10 C 1.46497 * 120.00102 * 5.48053 * 9 7 6 11 11 C 1.46497 * 119.99683 * 185.47544 * 9 7 6 12 12 C 1.53782 * 113.61787 * 63.02196 * 11 9 7 13 13 C 1.53786 * 87.08103 * 89.19759 * 12 11 9 14 14 N 1.46500 * 113.61259 * 270.80498 * 13 12 11 15 15 C 1.36942 * 119.99794 * 198.47813 * 14 13 12 16 16 H 1.08006 * 119.99510 * 4.75636 * 15 14 13 17 17 C 1.38807 * 119.99964 * 184.75222 * 15 14 13 18 18 N 1.31628 * 119.99876 * 184.85019 * 17 15 14 19 19 Si 1.86796 * 120.00104 * 4.85505 * 17 15 14 20 20 H 1.48507 * 109.47092 * 84.91877 * 19 17 15 21 21 H 1.48504 * 109.47183 * 204.91422 * 19 17 15 22 22 H 1.48497 * 109.47128 * 324.91549 * 19 17 15 23 23 C 1.53784 * 87.16934 * 25.39231 * 13 12 11 24 24 H 1.09000 * 109.47153 * 270.02149 * 1 2 3 25 25 H 1.08997 * 109.47099 * 30.02089 * 1 2 3 26 26 H 1.08994 * 109.47196 * 150.02306 * 1 2 3 27 27 H 1.07995 * 125.42308 * 179.97438 * 4 3 2 28 28 H 1.09007 * 109.46934 * 275.31352 * 10 9 7 29 29 H 1.08994 * 109.47350 * 35.30826 * 10 9 7 30 30 H 1.09001 * 109.47221 * 155.31641 * 10 9 7 31 31 H 1.09002 * 112.85379 * 291.82084 * 11 9 7 32 32 H 1.09010 * 113.61009 * 334.65410 * 12 11 9 33 33 H 1.08995 * 113.61559 * 203.74725 * 12 11 9 34 34 H 1.08992 * 113.61145 * 139.98383 * 13 12 11 35 35 H 0.96994 * 120.00333 * 18.47370 * 14 13 12 36 36 H 0.96996 * 120.00179 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.61332 * 89.16227 * 23 13 12 38 38 H 1.09000 * 113.61069 * 220.05925 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6460 0.0064 6 6 2.3137 -1.0991 0.0006 7 6 1.8827 -2.5016 0.0012 8 8 0.7018 -2.7753 -0.1051 9 7 2.7948 -3.4868 0.1195 10 6 4.2006 -3.1577 0.3678 11 6 2.3804 -4.8869 0.0000 12 6 1.8104 -5.2448 -1.3827 13 6 3.2510 -5.5819 -1.8022 14 7 3.9864 -4.4381 -2.3473 15 6 5.1124 -4.6434 -3.0991 16 1 5.4151 -5.6482 -3.3548 17 6 5.8645 -3.5603 -3.5326 18 7 6.8913 -3.7506 -4.3338 19 14 5.4195 -1.8327 -2.9788 20 1 6.0447 -1.5593 -1.6597 21 1 5.9165 -0.8500 -3.9751 22 1 3.9439 -1.7153 -2.8611 23 6 3.5404 -5.8486 -0.3156 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5134 27 1 4.4043 1.3444 0.0003 28 1 4.6972 -2.9474 -0.5795 29 1 4.2600 -2.2803 1.0118 30 1 4.6904 -4.0004 0.8557 31 1 1.7533 -5.2150 0.8290 32 1 1.3888 -4.3921 -1.9152 33 1 1.1456 -6.1084 -1.3707 34 1 3.3266 -6.4710 -2.4281 35 1 3.6758 -3.5354 -2.1757 36 1 7.4171 -2.9938 -4.6365 37 1 3.3495 -6.8777 -0.0114 38 1 4.5135 -5.4828 0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998595606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:34 Heat of formation + Delta-G solvation = 47.183967 kcal Electronic energy + Delta-G solvation = -23239.462103 eV Core-core repulsion = 19893.037989 eV Total energy + Delta-G solvation = -3346.424113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47746 -40.29175 -37.97193 -35.53701 -34.30433 -33.28011 -31.57718 -30.59642 -28.03692 -27.09937 -25.26138 -24.65483 -23.61617 -22.59488 -21.48683 -20.17392 -18.54886 -17.86409 -17.23851 -17.00741 -16.51923 -16.18833 -15.50072 -14.85990 -14.57913 -14.44456 -13.96664 -13.64056 -13.38696 -13.12265 -12.97651 -12.72688 -12.31966 -12.22517 -12.03754 -11.79836 -11.47863 -11.15998 -11.08121 -10.89185 -10.82228 -10.34183 -10.29195 -10.07936 -9.71217 -9.65082 -9.06198 -8.97532 -8.37199 -7.36776 -5.88515 -3.23962 0.82741 2.36779 2.45807 3.10648 3.13112 3.22791 3.29032 3.32569 3.98018 4.46059 4.49232 4.69509 4.90018 5.00004 5.15769 5.27972 5.32329 5.36694 5.45982 5.58762 5.61432 5.64326 5.74339 5.80482 5.91280 6.02249 6.06704 6.20558 6.25273 6.28748 6.43818 6.53149 6.66843 6.83917 7.31432 7.53261 7.91153 8.08013 8.32158 9.09963 9.82141 10.02702 11.29541 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.009044 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.862849 B = 3095.326326 C = 4324.967330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.072 3.928 3 N -0.493 5.493 4 C 0.192 3.808 5 O -0.181 6.181 6 C -0.107 4.107 7 C 0.605 3.395 8 O -0.516 6.516 9 N -0.578 5.578 10 C 0.068 3.932 11 C 0.125 3.875 12 C -0.160 4.160 13 C 0.170 3.830 14 N -0.729 5.729 15 C -0.245 4.245 16 H 0.094 0.906 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.870 3.130 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.283 1.283 23 C -0.180 4.180 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 3.947 12.221 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.223 5.223 4 C -0.033 4.033 5 O -0.067 6.067 6 C -0.162 4.162 7 C 0.392 3.608 8 O -0.395 6.395 9 N -0.310 5.310 10 C -0.074 4.074 11 C 0.023 3.977 12 C -0.200 4.200 13 C 0.059 3.941 14 N -0.371 5.371 15 C -0.374 4.374 16 H 0.111 0.889 17 C -0.187 4.187 18 N -0.575 5.575 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.209 1.209 23 C -0.221 4.221 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.757 4.268 12.006 15.461 hybrid contribution 0.410 0.923 0.291 1.050 sum -8.347 5.191 12.297 15.743 Atomic orbital electron populations 1.20380 0.85354 1.04509 1.03442 1.22033 0.98340 0.86367 0.98419 1.70330 1.01224 1.31422 1.19291 1.28349 0.97621 0.80087 0.97252 1.84758 1.29530 1.23938 1.68449 1.22983 0.81430 0.96447 1.15359 1.16363 0.85469 0.81269 0.77673 1.90807 1.15706 1.81742 1.51204 1.47419 1.08639 1.05671 1.69238 1.22211 0.80904 1.01270 1.03049 1.21967 0.98132 0.79582 0.98060 1.23720 0.98511 1.01975 0.95767 1.21120 0.89650 0.91782 0.91590 1.42655 1.30124 1.02671 1.61629 1.19114 0.99132 0.95273 1.23920 0.88852 1.24652 0.97449 0.96909 0.99677 1.69683 1.20539 1.30188 1.37122 0.86833 0.77704 0.86817 0.78526 1.20091 1.21756 1.20932 1.24238 0.97910 0.97814 1.02159 0.90247 0.90555 0.88471 0.73076 0.90487 0.91442 0.89654 0.90214 0.91010 0.88925 0.91119 0.80290 0.92924 0.89379 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.94 36.00 0.36 -0.68 16 2 C 0.07 1.14 7.16 -82.47 -0.59 0.55 16 3 N -0.49 -7.41 11.26 -10.88 -0.12 -7.53 16 4 C 0.19 2.54 13.21 52.25 0.69 3.23 16 5 O -0.18 -2.92 7.74 4.41 0.03 -2.88 16 6 C -0.11 -1.82 6.73 -36.84 -0.25 -2.07 16 7 C 0.61 10.79 7.25 -12.83 -0.09 10.69 16 8 O -0.52 -9.58 13.98 5.21 0.07 -9.51 16 9 N -0.58 -9.80 2.10 -174.43 -0.37 -10.17 16 10 C 0.07 1.12 7.85 59.85 0.47 1.58 16 11 C 0.13 1.95 4.09 -67.03 -0.27 1.67 16 12 C -0.16 -2.64 7.14 -25.92 -0.19 -2.82 16 13 C 0.17 3.18 4.53 -67.11 -0.30 2.88 16 14 N -0.73 -16.88 3.86 -52.63 -0.20 -17.09 16 15 C -0.24 -6.68 10.46 -15.06 -0.16 -6.84 16 16 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 17 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 19 Si 0.87 21.67 25.61 -169.99 -4.35 17.31 16 20 H -0.27 -6.35 6.93 56.52 0.39 -5.96 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -7.06 6.51 56.52 0.37 -6.69 16 23 C -0.18 -2.77 7.16 -25.83 -0.19 -2.95 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 1.37 6.37 -51.93 -0.33 1.04 16 27 H 0.25 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.08 1.52 3.84 -51.93 -0.20 1.32 16 29 H 0.07 1.00 5.98 -51.93 -0.31 0.69 16 30 H 0.08 1.25 6.16 -51.93 -0.32 0.93 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.36 7.33 -51.92 -0.38 0.98 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.36 8.58 3.92 -40.82 -0.16 8.42 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.34 5.77 -51.93 -0.30 1.04 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -32.85 302.71 -4.78 -37.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.56 Total: 9.95 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.62 Total: 5.42 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.08 Total: -62.48 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.11 Total: -12.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.35 Total: 17.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.85 -4.78 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998595606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.816 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds