Wall clock time and date at job start Tue Mar 31 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29930 * 125.38270 * 2 1 4 4 C 1.36063 * 108.48135 * 179.97438 * 3 2 1 5 5 C 1.47421 * 126.44783 * 180.02562 * 4 3 2 6 6 O 1.21614 * 120.00035 * 173.44763 * 5 4 3 7 7 N 1.34771 * 120.00240 * 353.45251 * 5 4 3 8 8 C 1.46507 * 120.00104 * 3.45490 * 7 5 4 9 9 C 1.46504 * 120.00392 * 183.45924 * 7 5 4 10 10 C 1.53777 * 113.61346 * 219.13561 * 9 7 5 11 11 C 1.53959 * 87.01855 * 220.04562 * 10 9 7 12 12 N 1.46497 * 113.74516 * 139.94221 * 11 10 9 13 13 C 1.36944 * 119.99532 * 107.40346 * 12 11 10 14 14 H 1.07992 * 120.00440 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99417 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99573 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47521 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46961 * 120.00417 * 17 15 13 20 20 H 1.48502 * 109.47157 * 239.99901 * 17 15 13 21 21 C 1.53779 * 113.61631 * 121.52523 * 9 7 5 22 22 C 1.36086 * 107.10448 * 359.97438 * 4 3 2 23 23 O 1.34058 * 125.37976 * 180.24883 * 2 1 3 24 24 H 1.09005 * 109.46719 * 90.00220 * 1 2 3 25 25 H 1.09001 * 109.47391 * 209.99998 * 1 2 3 26 26 H 1.08997 * 109.47287 * 330.00447 * 1 2 3 27 27 H 1.08994 * 109.47080 * 84.09848 * 8 7 5 28 28 H 1.08996 * 109.47370 * 204.10181 * 8 7 5 29 29 H 1.09003 * 109.46734 * 324.10220 * 8 7 5 30 30 H 1.08998 * 112.84552 * 350.33090 * 9 7 5 31 31 H 1.09001 * 113.62125 * 334.56142 * 10 9 7 32 32 H 1.09000 * 113.61756 * 105.46830 * 10 9 7 33 33 H 1.09000 * 113.53480 * 270.81229 * 11 10 9 34 34 H 0.96994 * 120.00459 * 287.40183 * 12 11 10 35 35 H 0.97001 * 119.99952 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.61248 * 254.53060 * 21 9 7 37 37 H 1.08996 * 113.61579 * 25.43135 * 21 9 7 38 38 H 1.07995 * 126.53017 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0013 6 8 5.8563 1.0673 0.1220 7 7 4.5925 2.8763 -0.1316 8 6 3.2495 3.4577 -0.2008 9 6 5.7708 3.7436 -0.2071 10 6 5.6092 5.0699 0.5542 11 6 6.3405 5.7416 -0.6224 12 7 5.7818 7.0424 -0.9990 13 6 6.4648 8.1921 -0.7039 14 1 7.4153 8.1399 -0.1939 15 6 5.9356 9.4248 -1.0611 16 7 4.7774 9.4885 -1.6831 17 14 6.8668 10.9931 -0.6579 18 1 8.1330 10.6519 0.0389 19 1 7.1748 11.7227 -1.9142 20 1 6.0332 11.8516 0.2214 21 6 5.8389 4.5796 -1.4960 22 6 3.5660 -0.6971 0.0015 23 8 2.2832 -1.0930 -0.0047 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 2.8654 3.6059 0.8084 28 1 3.2948 4.4167 -0.7168 29 1 2.5891 2.7829 -0.7454 30 1 6.6981 3.2186 0.0223 31 1 4.5722 5.3879 0.6624 32 1 6.1639 5.1057 1.4918 33 1 7.4240 5.7640 -0.5057 34 1 4.9283 7.0894 -1.4573 35 1 4.4079 10.3498 -1.9330 36 1 6.5788 4.2200 -2.2111 37 1 4.8648 4.7631 -1.9494 38 1 4.4361 -1.3369 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998657925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:02 Heat of formation + Delta-G solvation = 35.140887 kcal Electronic energy + Delta-G solvation = -21378.873752 eV Core-core repulsion = 18031.927412 eV Total energy + Delta-G solvation = -3346.946340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.67878 -39.96926 -37.94680 -35.37784 -34.48211 -33.02725 -32.40883 -29.95057 -28.16278 -26.80159 -25.38733 -25.04029 -23.81494 -22.24966 -21.45447 -19.75182 -18.79051 -17.67693 -17.19545 -17.07551 -16.75866 -16.18712 -15.18843 -14.82112 -14.55403 -14.35379 -14.05011 -13.72015 -13.53129 -13.08675 -12.92008 -12.85453 -12.71747 -12.35805 -12.05457 -11.76657 -11.44765 -11.23080 -10.90180 -10.66492 -10.57186 -10.36750 -10.20270 -10.03401 -9.88754 -9.56170 -9.25534 -8.89310 -8.35053 -6.97725 -5.79401 -3.08189 0.90574 1.79670 2.31761 3.02479 3.23061 3.42713 3.48833 3.50819 3.63325 4.47621 4.54379 4.59091 4.93912 4.98380 5.14794 5.16335 5.20461 5.34495 5.39316 5.45884 5.47974 5.50175 5.68761 5.86554 5.91222 5.99683 6.17363 6.23907 6.33388 6.37958 6.51698 6.59558 6.82849 7.04426 7.25083 7.54606 7.70187 8.16068 8.39043 9.50487 10.07344 10.42119 11.43069 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.003294 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.276505 B = 8497.476281 C = 9098.772177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.190 3.810 3 N -0.455 5.455 4 C -0.062 4.062 5 C 0.594 3.406 6 O -0.546 6.546 7 N -0.578 5.578 8 C 0.073 3.927 9 C 0.114 3.886 10 C -0.174 4.174 11 C 0.170 3.830 12 N -0.710 5.710 13 C -0.243 4.243 14 H 0.073 0.927 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.162 4.162 22 C 0.007 3.993 23 O -0.199 6.199 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -21.407 3.017 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.018 4.018 3 N -0.186 5.186 4 C -0.182 4.182 5 C 0.381 3.619 6 O -0.425 6.425 7 N -0.307 5.307 8 C -0.070 4.070 9 C 0.011 3.989 10 C -0.216 4.216 11 C 0.057 3.943 12 N -0.348 5.348 13 C -0.374 4.374 14 H 0.091 0.909 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.202 4.202 22 C -0.067 4.067 23 O -0.085 6.085 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.224 -20.841 3.115 22.621 hybrid contribution 0.371 0.278 0.091 0.472 sum -7.853 -20.564 3.206 22.244 Atomic orbital electron populations 1.20322 0.80922 1.05392 1.04963 1.26532 0.96782 0.78514 0.99957 1.71032 1.00842 1.28855 1.17893 1.21867 0.92164 0.93014 1.11172 1.16862 0.86017 0.81927 0.77095 1.90792 1.24719 1.75172 1.51805 1.47699 1.08416 1.05211 1.69401 1.22168 0.82232 1.00127 1.02470 1.22703 0.88341 0.89193 0.98691 1.24355 1.02789 0.94243 1.00171 1.21370 0.96393 0.84838 0.91694 1.42364 1.23954 0.99754 1.68678 1.19366 1.02155 0.84672 1.31212 0.90927 1.24766 0.97294 0.97717 1.01122 1.69670 1.18727 1.24156 1.45500 0.86111 0.78892 0.83680 0.77465 1.20491 1.21863 1.21854 1.23929 1.02054 0.97509 0.96693 1.25237 0.84720 0.95667 1.01067 1.84375 1.16772 1.38009 1.69365 0.88684 0.89229 0.87767 0.92741 0.90795 0.88458 0.86721 0.89775 0.92086 0.90213 0.78086 0.93510 0.91675 0.89964 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.19 1.77 8.30 -13.08 -0.11 1.66 16 3 N -0.45 -5.47 7.86 -7.66 -0.06 -5.53 16 4 C -0.06 -0.82 6.66 -83.02 -0.55 -1.38 16 5 C 0.59 9.40 7.67 -12.52 -0.10 9.31 16 6 O -0.55 -9.76 16.37 5.27 0.09 -9.67 16 7 N -0.58 -9.04 3.08 -174.27 -0.54 -9.58 16 8 C 0.07 1.02 8.32 59.85 0.50 1.52 16 9 C 0.11 1.87 4.22 -67.12 -0.28 1.59 16 10 C -0.17 -3.10 7.31 -25.83 -0.19 -3.29 16 11 C 0.17 3.40 4.48 -67.03 -0.30 3.10 16 12 N -0.71 -17.71 5.41 -52.55 -0.28 -18.00 16 13 C -0.24 -6.72 9.97 -15.05 -0.15 -6.87 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 17 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C -0.16 -2.80 7.34 -25.92 -0.19 -2.99 16 22 C 0.01 0.07 11.95 29.96 0.36 0.43 16 23 O -0.20 -1.91 10.73 6.49 0.07 -1.84 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.08 6.11 -51.93 -0.32 0.77 16 29 H 0.10 1.30 5.30 -51.93 -0.28 1.03 16 30 H 0.11 1.93 7.20 -51.93 -0.37 1.55 16 31 H 0.08 1.56 6.68 -51.93 -0.35 1.22 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.45 6.88 -51.93 -0.36 1.09 16 38 H 0.23 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -33.21 320.85 -5.84 -39.05 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.92 Total: 7.94 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.73 Total: 2.72 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.16 Total: -60.35 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.16 Total: -11.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.21 -5.84 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998657925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.192 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds