Wall clock time and date at job start Tue Mar 31 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29930 * 125.38270 * 2 1 4 4 C 1.36063 * 108.48135 * 179.97438 * 3 2 1 5 5 C 1.47421 * 126.44783 * 180.02562 * 4 3 2 6 6 O 1.21614 * 120.00035 * 173.44763 * 5 4 3 7 7 N 1.34771 * 120.00240 * 353.45251 * 5 4 3 8 8 C 1.46507 * 120.00104 * 3.45490 * 7 5 4 9 9 C 1.46504 * 120.00392 * 183.45924 * 7 5 4 10 10 C 1.53777 * 113.61346 * 219.13561 * 9 7 5 11 11 C 1.53959 * 87.01855 * 220.04562 * 10 9 7 12 12 N 1.46497 * 113.74516 * 139.94221 * 11 10 9 13 13 C 1.36944 * 119.99532 * 107.40346 * 12 11 10 14 14 H 1.07992 * 120.00440 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99417 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00276 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99573 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47521 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46961 * 120.00417 * 17 15 13 20 20 H 1.48502 * 109.47157 * 239.99901 * 17 15 13 21 21 C 1.53779 * 113.61631 * 121.52523 * 9 7 5 22 22 C 1.36086 * 107.10448 * 359.97438 * 4 3 2 23 23 O 1.34058 * 125.37976 * 180.24883 * 2 1 3 24 24 H 1.09005 * 109.46719 * 90.00220 * 1 2 3 25 25 H 1.09001 * 109.47391 * 209.99998 * 1 2 3 26 26 H 1.08997 * 109.47287 * 330.00447 * 1 2 3 27 27 H 1.08994 * 109.47080 * 84.09848 * 8 7 5 28 28 H 1.08996 * 109.47370 * 204.10181 * 8 7 5 29 29 H 1.09003 * 109.46734 * 324.10220 * 8 7 5 30 30 H 1.08998 * 112.84552 * 350.33090 * 9 7 5 31 31 H 1.09001 * 113.62125 * 334.56142 * 10 9 7 32 32 H 1.09000 * 113.61756 * 105.46830 * 10 9 7 33 33 H 1.09000 * 113.53480 * 270.81229 * 11 10 9 34 34 H 0.96994 * 120.00459 * 287.40183 * 12 11 10 35 35 H 0.97001 * 119.99952 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.61248 * 254.53060 * 21 9 7 37 37 H 1.08996 * 113.61579 * 25.43135 * 21 9 7 38 38 H 1.07995 * 126.53017 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7439 1.5438 0.0013 6 8 5.8563 1.0673 0.1220 7 7 4.5925 2.8763 -0.1316 8 6 3.2495 3.4577 -0.2008 9 6 5.7708 3.7436 -0.2071 10 6 5.6092 5.0699 0.5542 11 6 6.3405 5.7416 -0.6224 12 7 5.7818 7.0424 -0.9990 13 6 6.4648 8.1921 -0.7039 14 1 7.4153 8.1399 -0.1939 15 6 5.9356 9.4248 -1.0611 16 7 4.7774 9.4885 -1.6831 17 14 6.8668 10.9931 -0.6579 18 1 8.1330 10.6519 0.0389 19 1 7.1748 11.7227 -1.9142 20 1 6.0332 11.8516 0.2214 21 6 5.8389 4.5796 -1.4960 22 6 3.5660 -0.6971 0.0015 23 8 2.2832 -1.0930 -0.0047 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 2.8654 3.6059 0.8084 28 1 3.2948 4.4167 -0.7168 29 1 2.5891 2.7829 -0.7454 30 1 6.6981 3.2186 0.0223 31 1 4.5722 5.3879 0.6624 32 1 6.1639 5.1057 1.4918 33 1 7.4240 5.7640 -0.5057 34 1 4.9283 7.0894 -1.4573 35 1 4.4079 10.3498 -1.9330 36 1 6.5788 4.2200 -2.2111 37 1 4.8648 4.7631 -1.9494 38 1 4.4361 -1.3369 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998657925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:01 Heat of formation + Delta-G solvation = 11.301218 kcal Electronic energy + Delta-G solvation = -21379.907518 eV Core-core repulsion = 18031.927412 eV Total energy + Delta-G solvation = -3347.980106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.47066 -41.27696 -39.36417 -36.45444 -35.84712 -34.70865 -33.10474 -31.89921 -28.83972 -28.02623 -26.84499 -26.47784 -25.46681 -23.41222 -22.44217 -20.94648 -20.25132 -19.05417 -18.72346 -17.99605 -17.91415 -17.32306 -16.44677 -16.39680 -16.10568 -15.54790 -15.04637 -14.92348 -14.78270 -14.24724 -14.16484 -13.86069 -13.55134 -13.46718 -13.28019 -13.21908 -13.13639 -12.82511 -12.34632 -12.22349 -12.13620 -12.00530 -11.79655 -11.50409 -11.42757 -11.08232 -10.88807 -10.09946 -9.60644 -9.00204 -7.94938 -5.23607 0.04781 0.94540 1.48785 1.48861 1.58826 1.59434 1.88929 2.13366 2.57027 2.85609 3.36578 3.50921 3.73652 3.77915 3.79871 3.92561 4.17345 4.25672 4.36594 4.42381 4.53006 4.60303 4.69932 4.72867 4.75951 4.78566 4.85742 4.86755 5.00169 5.10151 5.12786 5.32798 5.42788 5.51862 5.61237 6.25698 6.27614 6.48563 6.95799 7.33583 8.07802 8.32151 9.28472 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.003294 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.276505 B = 8497.476281 C = 9098.772177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.200 3.800 3 N -0.483 5.483 4 C -0.099 4.099 5 C 0.592 3.408 6 O -0.573 6.573 7 N -0.583 5.583 8 C 0.081 3.919 9 C 0.128 3.872 10 C -0.162 4.162 11 C 0.156 3.844 12 N -0.723 5.723 13 C -0.244 4.244 14 H 0.078 0.922 15 C -0.074 4.074 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.294 1.294 21 C -0.149 4.149 22 C 0.028 3.972 23 O -0.195 6.195 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 -23.007 3.485 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.009 4.009 3 N -0.214 5.214 4 C -0.217 4.217 5 C 0.381 3.619 6 O -0.454 6.454 7 N -0.312 5.312 8 C -0.061 4.061 9 C 0.024 3.976 10 C -0.204 4.204 11 C 0.045 3.955 12 N -0.360 5.360 13 C -0.376 4.376 14 H 0.096 0.904 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.801 3.199 18 H -0.190 1.190 19 H -0.221 1.221 20 H -0.221 1.221 21 C -0.189 4.189 22 C -0.046 4.046 23 O -0.081 6.081 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -8.682 -22.478 3.605 24.364 hybrid contribution 0.466 0.629 -0.035 0.784 sum -8.215 -21.848 3.570 23.613 Atomic orbital electron populations 1.20623 0.77669 1.06808 1.06463 1.27446 0.98185 0.77706 0.97515 1.70936 1.00610 1.30236 1.19663 1.21616 0.91952 0.93698 1.14460 1.17197 0.86626 0.81941 0.76144 1.90762 1.25971 1.75582 1.53070 1.47723 1.08454 1.05424 1.69584 1.22145 0.81722 0.99705 1.02531 1.22429 0.88980 0.88785 0.97371 1.24136 1.01964 0.94654 0.99626 1.21645 0.96651 0.83646 0.93551 1.42507 1.23614 1.00900 1.69003 1.19744 1.02167 0.85721 1.29950 0.90415 1.25554 0.98382 1.00784 1.01949 1.69815 1.20373 1.24452 1.47280 0.85091 0.78063 0.79767 0.76942 1.19046 1.22111 1.22097 1.23767 1.01926 0.96185 0.97000 1.25677 0.85632 0.94949 0.98376 1.84429 1.16480 1.38053 1.69183 0.86967 0.86906 0.87195 0.92638 0.91773 0.87509 0.86650 0.90564 0.91548 0.89939 0.79301 0.93997 0.90700 0.90344 0.72981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.39 16 2 C 0.20 3.26 8.30 88.39 0.73 3.99 16 3 N -0.48 -10.97 7.86 -293.04 -2.30 -13.27 16 4 C -0.10 -2.50 6.66 40.41 0.27 -2.23 16 5 C 0.59 18.41 7.67 86.66 0.66 19.07 16 6 O -0.57 -20.17 16.37 -4.08 -0.07 -20.24 16 7 N -0.58 -17.99 3.08 -823.52 -2.54 -20.53 16 8 C 0.08 2.26 8.32 127.77 1.06 3.33 16 9 C 0.13 4.15 4.22 45.52 0.19 4.35 16 10 C -0.16 -5.75 7.31 31.18 0.23 -5.52 16 11 C 0.16 6.20 4.48 45.58 0.20 6.41 16 12 N -0.72 -36.44 5.41 -320.16 -1.73 -38.17 16 13 C -0.24 -13.52 9.97 84.03 0.84 -12.69 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 15 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 16 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 17 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 C -0.15 -5.10 7.34 31.12 0.23 -4.87 16 22 C 0.03 0.52 11.95 67.32 0.80 1.33 16 23 O -0.20 -3.25 10.73 0.32 0.00 -3.24 16 24 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.90 6.11 -2.39 -0.01 1.88 16 29 H 0.11 2.81 5.30 -2.39 -0.01 2.79 16 30 H 0.12 3.79 7.20 -2.39 -0.02 3.77 16 31 H 0.08 2.84 6.68 -2.39 -0.02 2.83 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.08 3.23 8.10 -2.39 -0.02 3.21 16 34 H 0.37 20.17 7.92 -92.71 -0.73 19.44 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.77 6.88 -2.39 -0.02 2.75 16 38 H 0.25 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -71.17 320.85 2.47 -68.70 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.36 Total: 27.60 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.44 Total: 9.75 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -6.29 Total: -130.72 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.17 2.47 -68.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998657925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.997 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds