Wall clock time and date at job start Tue Mar 31 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 127.33532 * 2 1 4 4 O 1.20656 * 112.30206 * 179.97438 * 3 2 1 5 5 C 1.33490 * 113.15768 * 0.02562 * 4 3 2 6 6 C 1.37364 * 106.34269 * 359.74126 * 5 4 3 7 7 C 1.47394 * 128.56726 * 180.23792 * 6 5 4 8 8 O 1.21603 * 120.00188 * 141.07512 * 7 6 5 9 9 N 1.34780 * 119.99658 * 321.07406 * 7 6 5 10 10 C 1.46498 * 120.00385 * 5.20088 * 9 7 6 11 11 C 1.46504 * 119.99657 * 185.20239 * 9 7 6 12 12 C 1.53778 * 113.61200 * 219.13206 * 11 9 7 13 13 C 1.53957 * 87.02167 * 220.04855 * 12 11 9 14 14 N 1.46504 * 113.53715 * 270.81485 * 13 12 11 15 15 C 1.36936 * 120.00040 * 252.48829 * 14 13 12 16 16 H 1.08004 * 119.99559 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00034 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99736 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47023 * 60.00623 * 19 17 15 21 21 H 1.48503 * 109.46638 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47208 * 300.00200 * 19 17 15 23 23 C 1.53780 * 113.61130 * 121.52806 * 11 9 7 24 24 H 1.09006 * 109.46673 * 90.03088 * 1 2 3 25 25 H 1.09003 * 109.46696 * 210.02025 * 1 2 3 26 26 H 1.08997 * 109.47589 * 330.02842 * 1 2 3 27 27 H 1.07997 * 126.83118 * 179.97438 * 5 4 3 28 28 H 1.08996 * 109.46919 * 84.51725 * 10 9 7 29 29 H 1.08998 * 109.47047 * 204.52106 * 10 9 7 30 30 H 1.09005 * 109.46617 * 324.52237 * 10 9 7 31 31 H 1.08994 * 112.85008 * 350.33569 * 11 9 7 32 32 H 1.08996 * 113.61689 * 334.57435 * 12 11 9 33 33 H 1.09007 * 113.61276 * 105.47231 * 12 11 9 34 34 H 1.08994 * 113.74108 * 139.94714 * 13 12 11 35 35 H 0.97000 * 119.99645 * 72.49970 * 14 13 12 36 36 H 0.97002 * 120.00011 * 179.97438 * 18 17 15 37 37 H 1.08996 * 113.61674 * 254.52687 * 23 11 9 38 38 H 1.08997 * 113.61584 * 25.43223 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0056 7 6 2.0401 -2.5991 0.0126 8 8 1.0989 -2.9865 0.6780 9 7 2.7550 -3.4770 -0.7188 10 6 3.9561 -3.0315 -1.4295 11 6 2.3309 -4.8768 -0.8030 12 6 3.4985 -5.8770 -0.7729 13 6 2.7358 -6.6766 -1.8449 14 7 1.8092 -7.6655 -1.2884 15 6 2.1048 -9.0003 -1.3656 16 1 3.0213 -9.3240 -1.8365 17 6 1.2265 -9.9373 -0.8387 18 7 0.1095 -9.5428 -0.2653 19 14 1.6302 -11.7582 -0.9435 20 1 2.9069 -12.0238 -0.2329 21 1 0.5399 -12.5439 -0.3117 22 1 1.7650 -12.1542 -2.3683 23 6 2.0600 -5.3529 -2.2399 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.5967 -1.1194 0.0004 28 1 4.8085 -3.0515 -0.7504 29 1 4.1472 -3.6961 -2.2720 30 1 3.8063 -2.0155 -1.7947 31 1 1.5301 -5.1192 -0.1044 32 1 4.4407 -5.4593 -1.1277 33 1 3.5985 -6.4030 0.1766 34 1 3.3771 -7.0889 -2.6239 35 1 0.9862 -7.3746 -0.8653 36 1 -0.5044 -10.1976 0.1025 37 1 1.0003 -5.4563 -2.4731 38 1 2.6081 -4.7915 -2.9965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999333528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:26 Heat of formation + Delta-G solvation = 45.637968 kcal Electronic energy + Delta-G solvation = -21590.709947 eV Core-core repulsion = 18244.218794 eV Total energy + Delta-G solvation = -3346.491153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.97986 -41.32934 -39.40875 -36.32620 -35.56447 -34.87993 -33.01834 -31.66042 -29.77928 -28.12224 -26.88858 -26.46528 -25.62365 -23.81528 -22.28582 -21.20351 -19.71412 -19.37401 -18.85675 -18.61275 -17.86537 -17.43327 -16.67688 -16.39237 -15.92377 -15.71285 -15.14627 -14.85990 -14.37055 -14.33418 -14.21384 -13.93829 -13.57120 -13.42102 -13.34417 -13.19904 -13.06861 -12.72758 -12.52430 -12.34451 -12.19843 -11.81941 -11.69551 -11.33474 -11.05618 -10.95335 -10.86837 -10.70753 -9.63829 -9.03258 -7.94513 -5.24768 0.15637 0.70736 1.48437 1.51806 1.57883 1.62101 1.90356 2.27438 2.56439 2.98745 3.30161 3.37463 3.56620 3.73803 3.82840 3.87298 3.95130 4.23601 4.28176 4.34094 4.37943 4.53621 4.56745 4.67954 4.71162 4.76301 4.80196 4.91470 5.05647 5.07995 5.11700 5.25442 5.31989 5.52509 5.68644 6.26692 6.33644 7.01754 7.18753 7.31904 8.08195 8.29369 9.28859 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038352 B = 0.003427 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.910028 B = 8168.342182 C = 8610.321019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.049 3.951 3 N -0.376 5.376 4 O 0.102 5.898 5 C 0.028 3.972 6 C -0.274 4.274 7 C 0.586 3.414 8 O -0.581 6.581 9 N -0.588 5.588 10 C 0.052 3.948 11 C 0.129 3.871 12 C -0.158 4.158 13 C 0.152 3.848 14 N -0.725 5.725 15 C -0.244 4.244 16 H 0.085 0.915 17 C -0.079 4.079 18 N -0.973 5.973 19 Si 0.976 3.024 20 H -0.276 1.276 21 H -0.300 1.300 22 H -0.274 1.274 23 C -0.148 4.148 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.275 0.725 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.048 0.952 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.034 20.301 -4.151 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 N -0.083 5.083 4 O 0.043 5.957 5 C -0.054 4.054 6 C -0.282 4.282 7 C 0.375 3.625 8 O -0.461 6.461 9 N -0.318 5.318 10 C -0.089 4.089 11 C 0.025 3.975 12 C -0.200 4.200 13 C 0.041 3.959 14 N -0.362 5.362 15 C -0.375 4.375 16 H 0.103 0.897 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.200 1.200 23 C -0.188 4.188 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.290 0.710 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.467 21.236 -3.872 24.443 hybrid contribution -0.907 -1.983 0.576 2.255 sum 10.560 19.254 -3.296 22.205 Atomic orbital electron populations 1.20291 0.84788 1.04361 1.04416 1.25106 0.99588 0.86691 0.99941 1.73664 0.89882 1.23710 1.21087 1.84544 1.20688 1.23864 1.66648 1.27300 1.00587 0.82692 0.94796 1.22136 0.94678 0.94152 1.17195 1.17351 0.81913 0.84343 0.78930 1.90803 1.31644 1.79934 1.43767 1.47814 1.27753 1.08302 1.47933 1.22432 0.85660 1.02269 0.98505 1.22387 0.98375 0.78881 0.97850 1.24156 0.98146 0.96757 1.00909 1.21282 0.91943 0.87922 0.94721 1.42427 1.22742 1.02307 1.68733 1.19701 1.03641 0.83810 1.30384 0.89714 1.25644 0.97053 1.02618 1.01735 1.69842 1.12747 1.34197 1.45559 0.85170 0.76708 0.79748 0.77870 1.20192 1.22669 1.20020 1.23854 1.01120 0.97353 0.96481 0.88749 0.90615 0.88874 0.70959 0.89104 0.88489 0.89302 0.90924 0.86262 0.93691 0.90023 0.79845 0.94102 0.93321 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.49 71.24 0.75 -0.98 16 2 C 0.05 1.14 7.59 45.16 0.34 1.48 16 3 N -0.38 -8.31 12.01 -44.78 -0.54 -8.85 16 4 O 0.10 1.70 11.06 77.02 0.85 2.55 16 5 C 0.03 0.35 10.14 67.61 0.69 1.04 16 6 C -0.27 -6.03 5.64 -18.74 -0.11 -6.14 16 7 C 0.59 17.06 7.64 86.65 0.66 17.72 16 8 O -0.58 -23.12 15.92 -4.04 -0.06 -23.18 16 9 N -0.59 -14.19 3.08 -823.57 -2.54 -16.73 16 10 C 0.05 0.60 7.82 127.77 1.00 1.60 16 11 C 0.13 4.08 4.10 45.52 0.19 4.27 16 12 C -0.16 -4.78 7.30 31.18 0.23 -4.55 16 13 C 0.15 5.51 4.57 45.58 0.21 5.72 16 14 N -0.72 -36.24 5.31 -320.15 -1.70 -37.94 16 15 C -0.24 -13.31 9.97 84.03 0.84 -12.47 16 16 H 0.09 4.31 7.83 -2.91 -0.02 4.28 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 18 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 19 Si 0.98 45.85 29.55 68.60 2.03 47.87 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.15 -4.48 7.34 31.12 0.23 -4.25 16 24 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 1.93 7.47 -2.39 -0.02 1.91 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.28 0.44 6.65 -2.91 -0.02 0.42 16 28 H 0.09 0.53 7.51 -2.39 -0.02 0.51 16 29 H 0.10 0.94 6.12 -2.39 -0.01 0.93 16 30 H 0.09 0.72 5.96 -2.38 -0.01 0.71 16 31 H 0.07 3.06 7.20 -2.39 -0.02 3.04 16 32 H 0.12 2.48 6.69 -2.39 -0.02 2.47 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 35 H 0.37 20.62 7.90 -92.71 -0.73 19.89 16 36 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.12 2.61 6.89 -2.39 -0.02 2.60 16 Total: -1.00 -77.78 318.63 4.17 -73.60 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.36 Total: 23.70 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.49 Total: -0.60 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -4.49 Total: -123.95 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.79 Total: -20.63 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.78 4.17 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999333528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.241 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds