Wall clock time and date at job start Tue Mar 31 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.33886 * 2 1 4 4 O 1.20663 * 112.30043 * 180.30235 * 3 2 1 5 5 C 1.33488 * 113.15854 * 359.71637 * 4 3 2 6 6 C 1.37362 * 106.34134 * 359.97438 * 5 4 3 7 7 C 1.47396 * 128.56217 * 179.97438 * 6 5 4 8 8 O 1.21614 * 119.99889 * 227.90161 * 7 6 5 9 9 N 1.34774 * 120.00398 * 47.91170 * 7 6 5 10 10 C 1.46934 * 120.60861 * 175.66958 * 9 7 6 11 11 C 1.53186 * 108.77203 * 233.57452 * 10 9 7 12 12 C 1.53043 * 109.34127 * 305.41478 * 11 10 9 13 13 C 1.53043 * 109.53765 * 61.35089 * 12 11 10 14 14 H 1.08997 * 109.49776 * 58.58475 * 13 12 11 15 15 N 1.46498 * 109.49541 * 178.68502 * 13 12 11 16 16 C 1.36938 * 119.99616 * 204.99843 * 15 13 12 17 17 H 1.08002 * 120.00155 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99825 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00068 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99985 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47386 * 59.99914 * 20 18 16 22 22 H 1.48508 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47006 * 299.99533 * 20 18 16 24 24 C 1.46923 * 120.62776 * 355.68987 * 9 7 6 25 25 H 1.08992 * 109.47143 * 270.14391 * 1 2 3 26 26 H 1.09005 * 109.46913 * 30.14319 * 1 2 3 27 27 H 1.08994 * 109.47222 * 150.14162 * 1 2 3 28 28 H 1.08002 * 126.82924 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.55727 * 113.80515 * 10 9 7 30 30 H 1.08994 * 109.61261 * 353.37965 * 10 9 7 31 31 H 1.09002 * 109.49826 * 185.44269 * 11 10 9 32 32 H 1.09003 * 109.49893 * 65.38524 * 11 10 9 33 33 H 1.09001 * 109.45686 * 181.37033 * 12 11 10 34 34 H 1.09000 * 109.45828 * 301.32891 * 12 11 10 35 35 H 0.96996 * 120.00175 * 24.99472 * 15 13 12 36 36 H 0.97001 * 120.00355 * 179.97438 * 19 18 16 37 37 H 1.09008 * 109.59052 * 6.60812 * 24 9 7 38 38 H 1.09002 * 109.70914 * 246.24988 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0059 5 6 3.6494 -0.6009 -0.0048 6 6 2.3991 -1.1697 0.0035 7 6 2.0401 -2.5992 0.0075 8 8 1.2024 -3.0179 -0.7684 9 7 2.6399 -3.4424 0.8710 10 6 2.2257 -4.8498 0.9521 11 6 1.8904 -5.1818 2.4095 12 6 3.0841 -4.8250 3.2982 13 6 3.3668 -3.3243 3.1975 14 1 2.4817 -2.7661 3.5026 15 7 4.4896 -2.9784 4.0725 16 6 4.6136 -1.7030 4.5555 17 1 3.8834 -0.9522 4.2916 18 6 5.6778 -1.3751 5.3842 19 7 6.5674 -2.2901 5.7062 20 14 5.8465 0.3645 6.0436 21 1 4.6464 0.7075 6.8481 22 1 7.0573 0.4544 6.8987 23 1 5.9698 1.3142 4.9087 24 6 3.7197 -2.9714 1.7490 25 1 -0.3633 0.0026 1.0276 26 1 -0.3633 0.8888 -0.5161 27 1 -0.3633 -0.8912 -0.5116 28 1 4.5967 -1.1197 -0.0088 29 1 3.0388 -5.4897 0.6094 30 1 1.3455 -5.0086 0.3293 31 1 1.6749 -6.2465 2.4998 32 1 1.0190 -4.6065 2.7224 33 1 2.8567 -5.0830 4.3326 34 1 3.9611 -5.3826 2.9694 35 1 5.1452 -3.6527 4.3099 36 1 7.3113 -2.0609 6.2850 37 1 3.8250 -1.8909 1.6515 38 1 4.6560 -3.4562 1.4727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000068885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:31 Heat of formation + Delta-G solvation = 18.669235 kcal Electronic energy + Delta-G solvation = -22422.461380 eV Core-core repulsion = 19074.800775 eV Total energy + Delta-G solvation = -3347.660605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -45.96114 -41.17730 -38.72914 -36.05594 -35.58685 -34.23489 -33.36329 -32.39849 -29.95477 -29.71186 -27.11727 -25.93005 -24.92483 -23.17722 -22.30396 -21.79551 -20.50405 -19.12634 -18.86991 -18.56556 -17.86716 -17.18882 -16.74556 -16.20145 -15.70432 -15.44708 -15.33454 -15.28221 -14.54085 -14.31868 -14.21752 -14.03423 -13.83582 -13.71299 -13.48699 -13.10170 -12.86390 -12.51604 -12.37771 -12.25686 -11.98588 -11.93858 -11.60870 -11.47221 -11.29564 -11.03819 -10.97251 -10.60527 -9.80628 -8.99032 -7.95349 -5.24003 0.15872 0.73597 1.47621 1.49064 1.51442 1.55136 1.90463 2.21018 2.55365 2.99060 3.28160 3.38333 3.53066 3.87300 3.90120 3.95213 4.04710 4.18722 4.35924 4.38643 4.40228 4.55246 4.56498 4.61041 4.70318 4.73768 4.86084 4.92780 4.99492 5.08414 5.11949 5.37343 5.45335 5.46127 5.55036 6.21717 6.28683 6.95895 7.14357 7.34842 8.06862 8.31842 9.26959 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.006913 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.973557 B = 4049.100212 C = 5586.249575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.379 5.379 4 O 0.090 5.910 5 C 0.015 3.985 6 C -0.274 4.274 7 C 0.600 3.400 8 O -0.565 6.565 9 N -0.592 5.592 10 C 0.111 3.889 11 C -0.119 4.119 12 C -0.120 4.120 13 C 0.165 3.835 14 H 0.032 0.968 15 N -0.726 5.726 16 C -0.240 4.240 17 H 0.068 0.932 18 C -0.061 4.061 19 N -0.962 5.962 20 Si 0.958 3.042 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.277 1.277 24 C 0.089 3.911 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.256 0.744 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -3.139 -11.273 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.088 5.088 4 O 0.032 5.968 5 C -0.066 4.066 6 C -0.282 4.282 7 C 0.388 3.612 8 O -0.446 6.446 9 N -0.323 5.323 10 C -0.011 4.011 11 C -0.157 4.157 12 C -0.158 4.158 13 C 0.055 3.945 14 H 0.050 0.950 15 N -0.367 5.367 16 C -0.372 4.372 17 H 0.086 0.914 18 C -0.254 4.254 19 N -0.612 5.612 20 Si 0.787 3.213 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.203 1.203 24 C -0.036 4.036 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.211 0.789 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.019 -1.878 -11.605 14.817 hybrid contribution 0.695 0.014 0.831 1.083 sum -8.323 -1.864 -10.774 13.742 Atomic orbital electron populations 1.20325 0.83617 1.04977 1.04441 1.25251 0.99940 0.86206 0.99517 1.73625 0.89708 1.24234 1.21273 1.84535 1.21196 1.23783 1.67259 1.26993 1.00910 0.83077 0.95668 1.22301 0.93967 0.95470 1.16413 1.16968 0.80532 0.83583 0.80128 1.90739 1.35047 1.77967 1.40798 1.48122 1.36365 1.10856 1.36962 1.21830 1.01848 0.79605 0.97769 1.21834 0.97358 1.03180 0.93349 1.21755 0.99023 0.94832 1.00203 1.20621 0.89911 0.95197 0.88722 0.94992 1.42473 1.28617 1.09613 1.55948 1.19419 1.06532 0.88659 1.22583 0.91363 1.25355 0.97908 1.00698 1.01472 1.69763 1.15767 1.34102 1.41537 0.85457 0.76619 0.81006 0.78178 1.21108 1.22101 1.20343 1.22809 0.89157 1.00695 0.90981 0.89013 0.88631 0.89317 0.72861 0.89372 0.89080 0.87681 0.92392 0.92206 0.91013 0.78916 0.93911 0.90349 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.49 71.24 0.75 -1.00 16 2 C 0.05 1.55 7.59 45.16 0.34 1.90 16 3 N -0.38 -11.69 12.01 -44.78 -0.54 -12.23 16 4 O 0.09 2.59 11.06 77.02 0.85 3.44 16 5 C 0.02 0.38 10.03 67.61 0.68 1.06 16 6 C -0.27 -7.95 5.53 -18.74 -0.10 -8.06 16 7 C 0.60 18.07 7.66 86.66 0.66 18.74 16 8 O -0.57 -19.32 16.26 -4.07 -0.07 -19.38 16 9 N -0.59 -16.06 2.97 -822.80 -2.45 -18.51 16 10 C 0.11 2.48 6.42 86.36 0.55 3.03 16 11 C -0.12 -2.56 6.08 30.67 0.19 -2.37 16 12 C -0.12 -3.32 5.35 30.62 0.16 -3.16 16 13 C 0.17 5.78 2.92 45.07 0.13 5.91 16 14 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 15 N -0.73 -32.82 5.12 -322.56 -1.65 -34.47 16 16 C -0.24 -12.36 9.93 84.03 0.83 -11.53 16 17 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 18 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 19 N -0.96 -55.35 13.06 21.65 0.28 -55.06 16 20 Si 0.96 44.36 29.55 68.60 2.03 46.38 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.09 2.65 5.55 86.36 0.48 3.13 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.09 2.06 7.86 -2.39 -0.02 2.04 16 28 H 0.26 4.60 7.56 -2.91 -0.02 4.58 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.09 7.03 -2.39 -0.02 2.07 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.38 18.31 7.80 -92.71 -0.72 17.59 16 36 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.08 2.46 4.48 -2.38 -0.01 2.45 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -64.99 318.49 3.97 -61.03 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.36 Total: 24.00 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.15 Total: 4.81 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -4.35 Total: -120.27 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.79 Total: -15.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.99 3.97 -61.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000068885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.695 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds