Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41267 * 128.07514 * 2 1 4 4 N 1.30133 * 106.58587 * 180.02562 * 3 2 1 5 5 O 1.20890 * 111.98163 * 359.72189 * 4 3 2 6 6 C 1.34636 * 111.46665 * 0.45477 * 5 4 3 7 7 C 1.47523 * 126.93970 * 179.82901 * 6 5 4 8 8 O 1.21577 * 119.99924 * 172.03579 * 7 6 5 9 9 N 1.34774 * 120.00011 * 352.03317 * 7 6 5 10 10 C 1.46939 * 120.60306 * 352.99615 * 9 7 6 11 11 C 1.53192 * 108.77241 * 233.57707 * 10 9 7 12 12 C 1.53040 * 109.33692 * 305.41831 * 11 10 9 13 13 C 1.53040 * 109.53972 * 61.35087 * 12 11 10 14 14 H 1.08998 * 109.49904 * 58.58144 * 13 12 11 15 15 N 1.46501 * 109.49435 * 178.68243 * 13 12 11 16 16 C 1.36938 * 119.99423 * 204.99978 * 15 13 12 17 17 H 1.08004 * 120.00480 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99733 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00185 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99800 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47079 * 120.00306 * 20 18 16 23 23 H 1.48502 * 109.47165 * 239.99917 * 20 18 16 24 24 C 1.46922 * 120.63311 * 173.02448 * 9 7 6 25 25 H 1.08997 * 109.47157 * 269.99798 * 1 2 3 26 26 H 1.09002 * 109.46647 * 29.99914 * 1 2 3 27 27 H 1.08993 * 109.47101 * 149.99727 * 1 2 3 28 28 H 1.08000 * 126.70642 * 359.96842 * 3 2 1 29 29 H 1.09002 * 109.55920 * 113.80983 * 10 9 7 30 30 H 1.08999 * 109.61450 * 353.38287 * 10 9 7 31 31 H 1.08998 * 109.49592 * 185.44900 * 11 10 9 32 32 H 1.09001 * 109.49578 * 65.38377 * 11 10 9 33 33 H 1.09003 * 109.45530 * 181.36704 * 12 11 10 34 34 H 1.08999 * 109.45914 * 301.32244 * 12 11 10 35 35 H 0.96997 * 120.00282 * 24.99479 * 15 13 12 36 36 H 0.96994 * 120.00062 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.58290 * 6.59793 * 24 9 7 38 38 H 1.09000 * 109.70277 * 246.24893 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3783 1.1121 0.0000 4 7 3.5891 0.6353 -0.0006 5 8 3.5995 -0.5735 0.0045 6 6 2.3509 -1.0770 -0.0006 7 6 1.9696 -2.5021 -0.0004 8 8 0.8045 -2.8196 0.1405 9 7 2.9127 -3.4521 -0.1564 10 6 4.2982 -3.0846 -0.4799 11 6 4.7333 -3.8549 -1.7306 12 6 4.5159 -5.3528 -1.5044 13 6 3.0291 -5.6236 -1.2632 14 1 2.4525 -5.2781 -2.1213 15 7 2.8178 -7.0614 -1.0780 16 6 1.5958 -7.6148 -1.3533 17 1 0.7878 -6.9913 -1.7065 18 6 1.3957 -8.9773 -1.1784 19 7 2.3802 -9.7371 -0.7475 20 14 -0.2714 -9.7321 -1.5532 21 1 -1.2013 -8.6722 -2.0191 22 1 -0.1220 -10.7602 -2.6143 23 1 -0.8161 -10.3642 -0.3248 24 6 2.5750 -4.8741 -0.0068 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 2.0948 2.1542 -0.0005 29 1 4.9492 -3.3452 0.3546 30 1 4.3574 -2.0133 -0.6716 31 1 5.7889 -3.6658 -1.9254 32 1 4.1410 -3.5263 -2.5846 33 1 4.8475 -5.9047 -2.3839 34 1 5.0895 -5.6758 -0.6356 35 1 3.5434 -7.6214 -0.7605 36 1 2.2404 -10.6892 -0.6256 37 1 1.4971 -4.9828 0.1140 38 1 3.0836 -5.2827 0.8663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000593266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = 45.803626 kcal Electronic energy + Delta-G solvation = -22091.558473 eV Core-core repulsion = 18745.074504 eV Total energy + Delta-G solvation = -3346.483969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.19421 -39.94620 -37.51142 -35.04693 -34.46020 -32.72740 -32.13963 -31.17849 -28.82810 -28.08442 -25.67585 -24.06226 -23.50924 -22.30216 -21.90184 -20.56941 -19.54418 -17.99526 -17.64363 -17.11055 -16.27628 -15.93883 -15.14809 -14.64772 -14.53416 -14.15668 -13.80731 -13.65460 -13.47480 -13.45252 -13.24655 -12.88878 -12.68176 -12.45037 -12.30831 -11.49484 -11.33998 -11.05063 -10.87084 -10.71365 -10.62998 -10.45569 -10.20119 -10.13433 -9.85829 -9.68984 -9.60664 -9.12474 -8.46101 -7.03425 -5.81082 -3.11154 0.69241 1.88717 2.49066 2.96558 3.18584 3.43220 3.49838 3.51905 3.95783 4.29288 4.52923 4.56525 4.80302 4.95265 5.06101 5.13165 5.25901 5.45078 5.46083 5.51270 5.54746 5.65299 5.73742 5.81594 5.85779 6.00146 6.04666 6.13205 6.17606 6.31575 6.41744 6.62080 6.77202 6.93981 7.39206 7.70177 7.83018 8.09040 8.36900 9.49055 10.02349 10.37712 11.41145 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.004396 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.310345 B = 6367.409857 C = 7257.719020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.127 4.127 3 C -0.013 4.013 4 N -0.352 5.352 5 O 0.113 5.887 6 C -0.081 4.081 7 C 0.596 3.404 8 O -0.511 6.511 9 N -0.590 5.590 10 C 0.097 3.903 11 C -0.128 4.128 12 C -0.127 4.127 13 C 0.168 3.832 14 H 0.053 0.947 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.092 3.908 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.197 0.803 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.094 0.906 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 20.204 0.917 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C -0.191 4.191 4 N -0.054 5.054 5 O 0.043 5.957 6 C -0.147 4.147 7 C 0.380 3.620 8 O -0.387 6.387 9 N -0.323 5.323 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.166 4.166 13 C 0.057 3.943 14 H 0.071 0.929 15 N -0.358 5.358 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.032 4.032 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.214 0.786 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.634 20.481 0.933 20.822 hybrid contribution -1.287 -0.645 0.013 1.440 sum 2.347 19.836 0.946 19.997 Atomic orbital electron populations 1.20300 0.86362 1.03982 1.03463 1.21653 0.99064 0.90326 1.02107 1.24961 0.87815 1.01954 1.04364 1.73729 1.23233 0.92036 1.16391 1.85083 1.28216 1.15108 1.67289 1.24251 0.84321 0.96547 1.09570 1.16697 0.85618 0.81337 0.78345 1.90851 1.17285 1.80035 1.50578 1.48227 1.09069 1.07610 1.67375 1.22127 0.81996 1.00232 0.98278 1.21874 1.01386 0.96218 0.97236 1.21848 0.97919 0.94462 1.02324 1.20493 0.93280 0.86091 0.94458 0.92927 1.42389 1.12982 1.01078 1.79336 1.19328 0.89464 0.91459 1.37255 0.90910 1.24748 0.97720 0.96286 1.01818 1.69666 1.30948 1.05108 1.52194 0.86124 0.83536 0.79111 0.77498 1.20400 1.21834 1.21766 1.22958 1.03336 0.75775 1.01121 0.90138 0.90907 0.89244 0.78647 0.90706 0.89019 0.90638 0.91568 0.91219 0.91858 0.77994 0.93473 0.88772 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.90 36.01 0.36 -0.46 16 2 C -0.13 -1.45 6.36 -103.98 -0.66 -2.11 16 3 C -0.01 -0.13 12.14 -17.12 -0.21 -0.34 16 4 N -0.35 -4.22 12.04 30.46 0.37 -3.85 16 5 O 0.11 1.40 7.95 15.57 0.12 1.52 16 6 C -0.08 -1.08 6.89 -36.31 -0.25 -1.33 16 7 C 0.60 9.43 7.68 -12.48 -0.10 9.33 16 8 O -0.51 -9.50 14.65 5.30 0.08 -9.42 16 9 N -0.59 -9.01 2.97 -174.00 -0.52 -9.52 16 10 C 0.10 1.17 6.14 -3.70 -0.02 1.15 16 11 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 12 C -0.13 -1.94 5.35 -26.69 -0.14 -2.09 16 13 C 0.17 3.24 2.92 -67.81 -0.20 3.04 16 14 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.72 -17.40 5.12 -53.31 -0.27 -17.68 16 16 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.09 1.67 6.03 -3.72 -0.02 1.65 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.05 6.91 -51.93 -0.36 0.69 16 28 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.03 4.29 -52.44 -0.23 0.81 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.39 9.85 7.80 -40.82 -0.32 9.54 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -31.15 315.01 -6.46 -37.61 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.04 Total: 6.24 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.65 Total: -0.06 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.30 Total: -57.95 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.20 Total: -7.90 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.15 -6.46 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000593266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.411 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds