Wall clock time and date at job start Tue Mar 31 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35312 * 128.04417 * 2 1 4 4 O 1.34015 * 106.67464 * 179.97438 * 3 2 1 5 5 N 1.20912 * 111.84191 * 359.69891 * 4 3 2 6 6 C 1.30983 * 111.43646 * 0.49316 * 5 4 3 7 7 C 1.48339 * 126.93635 * 179.79635 * 6 5 4 8 8 O 1.21482 * 120.00031 * 185.38692 * 7 6 5 9 9 N 1.34781 * 119.99752 * 5.38578 * 7 6 5 10 10 C 1.46930 * 120.63101 * 354.97914 * 9 7 6 11 11 C 1.53192 * 108.77278 * 126.41032 * 10 9 7 12 12 C 1.53038 * 109.31259 * 54.63823 * 11 10 9 13 13 C 1.53042 * 109.53861 * 298.63516 * 12 11 10 14 14 H 1.09008 * 109.49584 * 301.37936 * 13 12 11 15 15 N 1.46494 * 109.50292 * 181.31749 * 13 12 11 16 16 C 1.36930 * 120.00604 * 154.99375 * 15 13 12 17 17 H 1.08002 * 120.00045 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00381 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00004 * 359.72748 * 18 16 15 20 20 Si 1.86801 * 120.00015 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46898 * 120.00011 * 20 18 16 23 23 H 1.48501 * 109.47119 * 239.99605 * 20 18 16 24 24 C 1.46921 * 120.62988 * 175.00404 * 9 7 6 25 25 H 1.08999 * 109.47210 * 270.03258 * 1 2 3 26 26 H 1.09004 * 109.46635 * 30.03260 * 1 2 3 27 27 H 1.09000 * 109.47120 * 150.02747 * 1 2 3 28 28 H 1.08006 * 126.66172 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.58736 * 6.62891 * 10 9 7 30 30 H 1.09000 * 109.58661 * 246.19848 * 10 9 7 31 31 H 1.08995 * 109.50415 * 294.68537 * 11 10 9 32 32 H 1.08999 * 109.52023 * 174.60270 * 11 10 9 33 33 H 1.09001 * 109.46594 * 178.61019 * 12 11 10 34 34 H 1.08998 * 109.44965 * 58.64231 * 12 11 10 35 35 H 0.97008 * 119.99734 * 334.99578 * 15 13 12 36 36 H 0.97000 * 120.00071 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.58671 * 113.79865 * 24 9 7 38 38 H 1.09006 * 109.58474 * 353.37222 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5889 0.5773 0.0006 5 7 3.5989 -0.6318 0.0068 6 6 2.3837 -1.1205 0.0007 7 6 1.9991 -2.5532 0.0011 8 8 0.8306 -2.8685 -0.1038 9 7 2.9461 -3.5051 0.1178 10 6 4.3707 -3.1457 0.1351 11 6 5.0174 -3.7538 1.3836 12 6 4.7489 -5.2602 1.4100 13 6 3.2405 -5.5101 1.4770 14 1 2.8319 -5.0330 2.3678 15 7 2.9857 -6.9516 1.5340 16 6 1.8287 -7.4208 2.0963 17 1 1.1037 -6.7281 2.4975 18 6 1.5870 -8.7867 2.1497 19 7 2.4676 -9.6306 1.6551 20 14 0.0083 -9.4266 2.9162 21 1 -0.8121 -8.2823 3.3882 22 1 -0.7560 -10.1987 1.9037 23 1 0.3376 -10.3076 4.0654 24 6 2.5736 -4.9219 0.2296 25 1 -0.3633 0.0006 1.0276 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3633 -0.8902 -0.5134 28 1 2.0560 2.1074 -0.0004 29 1 4.4735 -2.0608 0.1619 30 1 4.8576 -3.5391 -0.7572 31 1 4.5921 -3.2928 2.2750 32 1 6.0926 -3.5762 1.3600 33 1 5.2290 -5.6994 2.2845 34 1 5.1528 -5.7167 0.5064 35 1 3.6367 -7.5739 1.1733 36 1 2.2989 -10.5851 1.6928 37 1 2.9140 -5.4601 -0.6550 38 1 1.4907 -5.0090 0.3187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000633039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:46 Heat of formation + Delta-G solvation = 27.966060 kcal Electronic energy + Delta-G solvation = -22057.084701 eV Core-core repulsion = 18709.827237 eV Total energy + Delta-G solvation = -3347.257464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.15474 -41.26251 -38.85933 -36.37277 -35.71125 -34.24743 -33.20183 -32.82874 -30.10788 -29.15044 -27.26815 -25.95608 -24.75328 -23.44610 -22.64590 -21.90319 -20.64624 -19.20459 -18.84235 -18.66504 -18.00196 -17.10835 -16.71912 -16.28230 -15.74737 -15.59599 -15.29066 -15.24094 -14.70365 -14.43981 -14.18082 -14.11036 -13.99099 -13.81466 -13.38026 -13.02904 -12.92723 -12.62299 -12.52351 -12.19121 -11.99988 -11.91689 -11.55614 -11.44387 -11.36319 -11.21860 -11.07636 -10.39271 -9.89753 -9.08553 -8.01724 -5.31928 0.03176 0.73211 1.42725 1.44185 1.54167 1.63839 1.97499 2.25367 2.50844 2.76894 3.31297 3.45399 3.64447 3.77326 3.91545 3.97294 4.06277 4.17259 4.28094 4.29483 4.37975 4.62021 4.63252 4.76442 4.77738 4.82612 4.92076 4.93187 5.02058 5.03873 5.27810 5.34359 5.35893 5.39115 5.50116 6.18950 6.20514 6.79294 7.10008 7.27342 7.97252 8.23964 9.21130 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.004418 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.570365 B = 6336.726739 C = 7220.208167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.176 4.176 3 C -0.023 4.023 4 O 0.128 5.872 5 N -0.339 5.339 6 C -0.048 4.048 7 C 0.580 3.420 8 O -0.563 6.563 9 N -0.591 5.591 10 C 0.073 3.927 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.169 3.831 14 H 0.033 0.967 15 N -0.728 5.728 16 C -0.249 4.249 17 H 0.066 0.934 18 C -0.066 4.066 19 N -0.963 5.963 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.108 3.892 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.280 0.720 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.378 0.622 36 H 0.254 0.746 37 H 0.062 0.938 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 25.999 -3.886 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.182 4.182 3 C -0.104 4.104 4 O 0.055 5.945 5 N -0.041 5.041 6 C -0.205 4.205 7 C 0.367 3.633 8 O -0.441 6.441 9 N -0.323 5.323 10 C -0.049 4.049 11 C -0.154 4.154 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.051 0.949 15 N -0.368 5.368 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.258 4.258 19 N -0.613 5.613 20 Si 0.799 3.201 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.018 4.018 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.296 0.704 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.211 0.789 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.608 25.174 -3.837 25.878 hybrid contribution -1.561 -1.325 0.189 2.056 sum 3.047 23.849 -3.648 24.318 Atomic orbital electron populations 1.20223 0.86152 1.04049 1.03334 1.21654 0.99870 0.90113 1.06535 1.26650 0.80200 1.02451 1.01092 1.84753 1.30797 1.14610 1.64333 1.73734 1.20461 0.92438 1.17468 1.23330 0.91053 0.96003 1.10066 1.17557 0.85023 0.83825 0.76881 1.90737 1.19214 1.82266 1.51905 1.48208 1.07907 1.06378 1.69834 1.22842 0.78068 1.04742 0.99225 1.21809 1.02468 0.93816 0.97342 1.21754 0.94173 0.97145 1.02569 1.20612 0.95224 0.84206 0.94062 0.94899 1.42500 1.21847 1.01308 1.71138 1.19564 0.97011 0.91022 1.30425 0.91565 1.25503 1.01592 0.96140 1.02608 1.69801 1.37258 1.01784 1.52484 0.85136 0.79382 0.78047 0.77570 1.19702 1.21750 1.21354 1.22373 1.00470 0.78805 1.00103 0.90553 0.87375 0.92693 0.70443 0.84643 0.90344 0.92306 0.87237 0.91554 0.91386 0.78907 0.93737 0.91985 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.06 71.24 0.72 -0.74 16 2 C -0.18 -3.48 6.34 -19.54 -0.12 -3.60 16 3 C -0.02 -0.24 12.24 67.14 0.82 0.58 16 4 O 0.13 2.02 11.18 71.88 0.80 2.83 16 5 N -0.34 -7.71 8.50 -49.51 -0.42 -8.13 16 6 C -0.05 -1.31 6.95 42.96 0.30 -1.01 16 7 C 0.58 20.89 7.72 86.93 0.67 21.56 16 8 O -0.56 -23.99 14.74 -3.66 -0.05 -24.05 16 9 N -0.59 -20.58 2.97 -821.75 -2.44 -23.02 16 10 C 0.07 1.95 6.33 86.36 0.55 2.50 16 11 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 12 C -0.12 -3.88 5.35 30.62 0.16 -3.71 16 13 C 0.17 7.16 2.92 45.07 0.13 7.29 16 14 H 0.03 1.50 8.08 -2.38 -0.02 1.48 16 15 N -0.73 -38.05 5.12 -322.57 -1.65 -39.70 16 16 C -0.25 -14.43 9.93 84.04 0.83 -13.60 16 17 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 19 N -0.96 -59.49 13.06 21.65 0.28 -59.20 16 20 Si 0.97 47.67 29.55 68.60 2.03 49.69 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.11 4.46 6.00 86.36 0.52 4.98 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.39 6.80 -2.39 -0.02 1.37 16 28 H 0.28 -0.61 8.06 -2.91 -0.02 -0.63 16 29 H 0.14 3.35 3.75 -47.38 -0.18 3.17 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.38 20.68 7.80 -92.70 -0.72 19.96 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.06 2.72 7.04 -2.38 -0.02 2.70 16 Total: -1.00 -75.31 314.68 3.97 -71.34 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.20 Total: 22.15 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.23 Total: 8.09 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -4.23 Total: -130.05 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.75 Total: -21.22 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Total: -75.31 3.97 -71.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000633039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.303 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds