Wall clock time and date at job start Tue Mar 31 2020 01:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.66787 * 2 1 4 4 C 1.42270 * 103.92490 * 180.09316 * 3 2 1 5 5 C 1.48334 * 126.93778 * 179.90865 * 4 3 2 6 6 O 1.21486 * 119.99935 * 359.71216 * 5 4 3 7 7 N 1.34778 * 119.99486 * 179.71176 * 5 4 3 8 8 C 1.46499 * 119.99533 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.52402 * 34.92114 * 8 7 5 10 10 C 1.53042 * 109.49455 * 154.99917 * 8 7 5 11 11 C 1.53044 * 109.53662 * 181.31498 * 10 8 7 12 12 C 1.53187 * 109.31450 * 298.63496 * 11 10 8 13 13 N 1.46930 * 108.77447 * 54.63251 * 12 11 10 14 14 C 1.36943 * 120.63047 * 126.36972 * 13 12 11 15 15 H 1.07995 * 120.00148 * 209.24829 * 14 13 12 16 16 C 1.38814 * 119.99794 * 29.24542 * 14 13 12 17 17 N 1.31619 * 120.00291 * 24.22367 * 16 14 13 18 18 Si 1.86800 * 119.99856 * 204.22959 * 16 14 13 19 19 H 1.48493 * 109.47179 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47343 * 59.99595 * 18 16 14 21 21 H 1.48505 * 109.46857 * 299.99918 * 18 16 14 22 22 C 1.46926 * 118.74284 * 306.64710 * 13 12 11 23 23 N 1.30988 * 106.11827 * 359.64998 * 4 3 2 24 24 O 1.20898 * 111.44132 * 0.22514 * 23 4 3 25 25 H 1.08998 * 109.47223 * 180.28456 * 1 2 3 26 26 H 1.09004 * 109.46497 * 300.28111 * 1 2 3 27 27 H 1.08992 * 109.47556 * 60.27946 * 1 2 3 28 28 H 1.08005 * 128.03530 * 359.96785 * 3 2 1 29 29 H 0.97000 * 120.00441 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.46049 * 61.29665 * 10 8 7 31 31 H 1.08992 * 109.45299 * 301.32650 * 10 8 7 32 32 H 1.09001 * 109.49819 * 178.68085 * 11 10 8 33 33 H 1.09006 * 109.49886 * 58.58547 * 11 10 8 34 34 H 1.09001 * 109.58924 * 294.84972 * 12 11 10 35 35 H 1.08998 * 109.70878 * 174.48709 * 12 11 10 36 36 H 0.96998 * 119.99374 * 5.77606 * 17 16 14 37 37 H 1.08991 * 109.58972 * 173.14482 * 22 13 12 38 38 H 1.09000 * 109.58442 * 293.56959 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5354 -0.0022 5 6 4.9076 1.2842 -0.0051 6 8 4.9008 2.4990 -0.0110 7 7 6.0785 0.6167 -0.0011 8 6 7.3431 1.3563 -0.0034 9 1 7.2319 2.2699 0.5806 10 6 8.4435 0.4881 0.6112 11 6 9.7578 1.2718 0.6393 12 6 10.1663 1.6276 -0.7936 13 7 9.0541 2.3376 -1.4399 14 6 9.2531 3.5585 -2.0273 15 1 8.4453 4.2738 -2.0731 16 6 10.4933 3.8767 -2.5638 17 7 11.3099 2.9185 -2.9473 18 14 11.0031 5.6650 -2.7412 19 1 12.3615 5.7357 -3.3367 20 1 11.0138 6.3117 -1.4044 21 1 10.0388 6.3694 -3.6241 22 6 7.7230 1.7156 -1.4386 23 7 3.4761 -0.7658 0.0044 24 8 2.3073 -1.0749 0.0057 25 1 -0.3633 -1.0276 0.0051 26 1 -0.3632 0.5182 0.8875 27 1 -0.3634 0.5094 -0.8924 28 1 2.0301 2.1272 -0.0005 29 1 6.0839 -0.3533 0.0040 30 1 8.5713 -0.4138 0.0126 31 1 8.1633 0.2126 1.6278 32 1 10.5356 0.6615 1.0984 33 1 9.6239 2.1863 1.2172 34 1 10.3886 0.7155 -1.3474 35 1 11.0479 2.2684 -0.7761 36 1 11.0140 1.9948 -2.9336 37 1 6.9924 2.4153 -1.8443 38 1 7.7419 0.8108 -2.0461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006643756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:28 Heat of formation + Delta-G solvation = 39.801699 kcal Electronic energy + Delta-G solvation = -21646.875840 eV Core-core repulsion = 18300.131608 eV Total energy + Delta-G solvation = -3346.744232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -45.27421 -39.71798 -37.56171 -34.62696 -34.33334 -33.59654 -32.46071 -30.42882 -28.88783 -28.13488 -25.12987 -24.90744 -22.94136 -22.28633 -21.66810 -20.07242 -19.30139 -18.03990 -17.72379 -17.36983 -16.84064 -15.78936 -14.90921 -14.61615 -14.26184 -14.07435 -13.99789 -13.78592 -13.66650 -13.55069 -13.36236 -12.82430 -12.74316 -12.36876 -12.04094 -11.68098 -11.25297 -10.78724 -10.72036 -10.60415 -10.38864 -10.27330 -10.07473 -9.98414 -9.87251 -9.67399 -9.33979 -8.99028 -8.31585 -6.87650 -6.04934 -3.23336 0.95766 1.48564 2.69406 3.00855 3.19788 3.53416 3.56014 3.74298 3.84166 4.29539 4.62914 4.70272 4.88162 4.99165 5.03687 5.16630 5.25320 5.31016 5.36364 5.43401 5.55482 5.59581 5.69934 5.90839 6.00502 6.11282 6.35050 6.42637 6.49431 6.53248 6.67905 6.83478 7.04900 7.17193 7.48879 7.83872 8.05002 8.19169 8.60089 9.12304 9.86029 10.28531 11.23379 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.003761 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.833392 B = 7443.936812 C = 8036.103722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.037 4.037 3 C -0.185 4.185 4 C -0.018 4.018 5 C 0.593 3.407 6 O -0.516 6.516 7 N -0.705 5.705 8 C 0.125 3.875 9 H 0.090 0.910 10 C -0.115 4.115 11 C -0.133 4.133 12 C 0.147 3.853 13 N -0.594 5.594 14 C -0.349 4.349 15 H 0.057 0.943 16 C -0.023 4.023 17 N -0.916 5.916 18 Si 1.066 2.934 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.144 3.856 23 N -0.335 5.335 24 O 0.119 5.881 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.181 0.819 29 H 0.401 0.599 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.081 0.919 36 H 0.268 0.732 37 H 0.060 0.940 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.697 -8.656 8.176 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.177 4.177 5 C 0.376 3.624 6 O -0.390 6.390 7 N -0.356 5.356 8 C 0.020 3.980 9 H 0.108 0.892 10 C -0.154 4.154 11 C -0.173 4.173 12 C 0.021 3.979 13 N -0.318 5.318 14 C -0.478 4.478 15 H 0.075 0.925 16 C -0.225 4.225 17 N -0.556 5.556 18 Si 0.895 3.105 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.219 1.219 22 C 0.016 3.984 23 N -0.037 5.037 24 O 0.044 5.956 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.198 0.802 29 H 0.235 0.765 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -16.494 -7.709 7.701 19.768 hybrid contribution -1.712 -0.816 0.426 1.944 sum -18.206 -8.525 8.127 21.684 Atomic orbital electron populations 1.20365 0.83405 1.04834 1.04414 1.24497 0.96539 0.85485 1.03523 1.22462 0.89782 1.01646 1.06806 1.23664 0.97073 0.90036 1.06949 1.16888 0.81586 0.86498 0.77464 1.90836 1.86518 1.12360 1.49294 1.46014 1.05634 1.10506 1.73434 1.21751 0.80353 0.95151 1.00707 0.89191 1.21681 0.95572 0.98472 0.99630 1.22059 0.95156 0.99365 1.00738 1.21018 0.92544 0.95572 0.88768 1.44046 1.03225 1.20757 1.63745 1.20010 1.00915 0.90877 1.36022 0.92542 1.25892 0.95064 1.05994 0.95521 1.70787 1.39854 1.01759 1.43232 0.83514 0.76050 0.74713 0.76178 1.21091 1.21963 1.21930 1.21097 0.89188 0.96334 0.91779 1.74156 0.97191 1.15709 1.16613 1.84768 1.11163 1.33500 1.66202 0.89690 0.88940 0.88898 0.80174 0.76451 0.92063 0.92648 0.92331 0.91964 0.96369 0.90048 0.92092 0.92136 0.96569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.01 0.38 0.09 16 2 C -0.04 -0.33 7.47 -35.35 -0.26 -0.59 16 3 C -0.18 -2.08 10.92 -39.08 -0.43 -2.51 16 4 C -0.02 -0.25 7.19 -82.52 -0.59 -0.85 16 5 C 0.59 10.18 7.81 -12.10 -0.09 10.08 16 6 O -0.52 -10.60 16.61 5.38 0.09 -10.51 16 7 N -0.71 -11.43 5.08 -54.70 -0.28 -11.71 16 8 C 0.13 2.35 2.59 -68.03 -0.18 2.18 16 9 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 10 C -0.12 -1.91 5.36 -26.69 -0.14 -2.06 16 11 C -0.13 -2.49 6.08 -26.61 -0.16 -2.65 16 12 C 0.15 3.44 4.70 -3.71 -0.02 3.43 16 13 N -0.59 -15.38 2.84 -172.59 -0.49 -15.87 16 14 C -0.35 -10.12 9.48 -15.06 -0.14 -10.26 16 15 H 0.06 1.68 7.94 -52.49 -0.42 1.26 16 16 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 17 N -0.92 -27.77 12.45 55.49 0.69 -27.08 16 18 Si 1.07 25.84 29.98 -169.99 -5.10 20.74 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.14 3.25 6.06 -3.93 -0.02 3.23 16 23 N -0.33 -4.43 11.84 33.29 0.39 -4.03 16 24 O 0.12 1.29 11.18 17.25 0.19 1.49 16 25 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.40 5.61 8.36 -40.82 -0.34 5.27 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.43 7.85 -51.93 -0.41 0.02 16 35 H 0.08 2.13 6.38 -51.93 -0.33 1.80 16 36 H 0.27 8.18 6.71 -40.82 -0.27 7.90 16 37 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -33.82 320.07 -6.60 -40.42 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.18 Total: 2.39 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.75 Total: -0.65 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.32 Total: -58.70 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.28 Total: -9.03 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.10 Total: 20.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.82 -6.60 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006643756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.222 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds