Wall clock time and date at job start Tue Mar 31 2020 01:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.66787 * 2 1 4 4 C 1.42270 * 103.92490 * 180.09316 * 3 2 1 5 5 C 1.48334 * 126.93778 * 179.90865 * 4 3 2 6 6 O 1.21486 * 119.99935 * 359.71216 * 5 4 3 7 7 N 1.34778 * 119.99486 * 179.71176 * 5 4 3 8 8 C 1.46499 * 119.99533 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.52402 * 34.92114 * 8 7 5 10 10 C 1.53042 * 109.49455 * 154.99917 * 8 7 5 11 11 C 1.53044 * 109.53662 * 181.31498 * 10 8 7 12 12 C 1.53187 * 109.31450 * 298.63496 * 11 10 8 13 13 N 1.46930 * 108.77447 * 54.63251 * 12 11 10 14 14 C 1.36943 * 120.63047 * 126.36972 * 13 12 11 15 15 H 1.07995 * 120.00148 * 209.24829 * 14 13 12 16 16 C 1.38814 * 119.99794 * 29.24542 * 14 13 12 17 17 N 1.31619 * 120.00291 * 24.22367 * 16 14 13 18 18 Si 1.86800 * 119.99856 * 204.22959 * 16 14 13 19 19 H 1.48493 * 109.47179 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47343 * 59.99595 * 18 16 14 21 21 H 1.48505 * 109.46857 * 299.99918 * 18 16 14 22 22 C 1.46926 * 118.74284 * 306.64710 * 13 12 11 23 23 N 1.30988 * 106.11827 * 359.64998 * 4 3 2 24 24 O 1.20898 * 111.44132 * 0.22514 * 23 4 3 25 25 H 1.08998 * 109.47223 * 180.28456 * 1 2 3 26 26 H 1.09004 * 109.46497 * 300.28111 * 1 2 3 27 27 H 1.08992 * 109.47556 * 60.27946 * 1 2 3 28 28 H 1.08005 * 128.03530 * 359.96785 * 3 2 1 29 29 H 0.97000 * 120.00441 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.46049 * 61.29665 * 10 8 7 31 31 H 1.08992 * 109.45299 * 301.32650 * 10 8 7 32 32 H 1.09001 * 109.49819 * 178.68085 * 11 10 8 33 33 H 1.09006 * 109.49886 * 58.58547 * 11 10 8 34 34 H 1.09001 * 109.58924 * 294.84972 * 12 11 10 35 35 H 1.08998 * 109.70878 * 174.48709 * 12 11 10 36 36 H 0.96998 * 119.99374 * 5.77606 * 17 16 14 37 37 H 1.08991 * 109.58972 * 173.14482 * 22 13 12 38 38 H 1.09000 * 109.58442 * 293.56959 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5354 -0.0022 5 6 4.9076 1.2842 -0.0051 6 8 4.9008 2.4990 -0.0110 7 7 6.0785 0.6167 -0.0011 8 6 7.3431 1.3563 -0.0034 9 1 7.2319 2.2699 0.5806 10 6 8.4435 0.4881 0.6112 11 6 9.7578 1.2718 0.6393 12 6 10.1663 1.6276 -0.7936 13 7 9.0541 2.3376 -1.4399 14 6 9.2531 3.5585 -2.0273 15 1 8.4453 4.2738 -2.0731 16 6 10.4933 3.8767 -2.5638 17 7 11.3099 2.9185 -2.9473 18 14 11.0031 5.6650 -2.7412 19 1 12.3615 5.7357 -3.3367 20 1 11.0138 6.3117 -1.4044 21 1 10.0388 6.3694 -3.6241 22 6 7.7230 1.7156 -1.4386 23 7 3.4761 -0.7658 0.0044 24 8 2.3073 -1.0749 0.0057 25 1 -0.3633 -1.0276 0.0051 26 1 -0.3632 0.5182 0.8875 27 1 -0.3634 0.5094 -0.8924 28 1 2.0301 2.1272 -0.0005 29 1 6.0839 -0.3533 0.0040 30 1 8.5713 -0.4138 0.0126 31 1 8.1633 0.2126 1.6278 32 1 10.5356 0.6615 1.0984 33 1 9.6239 2.1863 1.2172 34 1 10.3886 0.7155 -1.3474 35 1 11.0479 2.2684 -0.7761 36 1 11.0140 1.9948 -2.9336 37 1 6.9924 2.4153 -1.8443 38 1 7.7419 0.8108 -2.0461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006643756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:26 Heat of formation + Delta-G solvation = 16.141041 kcal Electronic energy + Delta-G solvation = -21647.901843 eV Core-core repulsion = 18300.131608 eV Total energy + Delta-G solvation = -3347.770236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.21199 -41.17312 -39.26198 -36.33077 -35.26338 -34.62864 -34.00889 -32.36197 -30.54826 -28.72597 -27.15747 -26.16167 -24.13759 -23.90853 -23.22538 -21.51467 -20.84413 -19.45916 -18.97138 -18.66245 -17.99175 -17.28712 -16.47196 -16.27158 -15.92628 -15.57243 -15.49152 -15.10981 -14.92639 -14.54328 -14.45893 -14.14434 -13.96668 -13.70440 -13.36128 -13.09225 -12.64269 -12.56793 -12.48239 -12.02801 -11.92087 -11.90274 -11.80898 -11.62888 -11.46397 -11.30681 -10.71266 -10.43506 -10.31826 -9.00648 -8.31866 -5.50063 -0.04388 0.61495 1.55089 1.62478 1.65843 1.82828 1.92729 2.02979 2.60366 2.77176 3.15203 3.41659 3.54979 3.67746 3.88620 3.91126 4.02961 4.08265 4.24757 4.29499 4.35094 4.59683 4.65316 4.77602 4.78739 4.80743 4.84536 4.90102 4.94685 5.06081 5.17686 5.20176 5.24437 5.42121 5.76945 6.18119 6.33709 6.81919 6.96010 6.99197 7.69375 8.10992 8.92397 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.003761 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.833392 B = 7443.936812 C = 8036.103722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.045 4.045 5 C 0.592 3.408 6 O -0.559 6.559 7 N -0.695 5.695 8 C 0.141 3.859 9 H 0.065 0.935 10 C -0.106 4.106 11 C -0.123 4.123 12 C 0.150 3.850 13 N -0.613 5.613 14 C -0.364 4.364 15 H 0.039 0.961 16 C -0.067 4.067 17 N -0.935 5.935 18 Si 1.116 2.884 19 H -0.285 1.285 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.147 3.853 23 N -0.346 5.346 24 O 0.129 5.871 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.189 0.811 29 H 0.415 0.585 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.013 0.987 35 H 0.048 0.952 36 H 0.255 0.745 37 H 0.029 0.971 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -9.890 9.434 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C -0.228 4.228 4 C -0.203 4.203 5 C 0.377 3.623 6 O -0.436 6.436 7 N -0.346 5.346 8 C 0.035 3.965 9 H 0.083 0.917 10 C -0.143 4.143 11 C -0.163 4.163 12 C 0.024 3.976 13 N -0.338 5.338 14 C -0.494 4.494 15 H 0.057 0.943 16 C -0.264 4.264 17 N -0.576 5.576 18 Si 0.939 3.061 19 H -0.210 1.210 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.020 3.980 23 N -0.046 5.046 24 O 0.051 5.949 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.206 0.794 29 H 0.252 0.748 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -18.354 -8.998 8.981 22.326 hybrid contribution -1.291 -0.507 -0.003 1.387 sum -19.644 -9.505 8.977 23.598 Atomic orbital electron populations 1.20693 0.79483 1.06683 1.06097 1.25267 0.98126 0.83708 1.00119 1.22678 0.88954 1.02930 1.08242 1.23377 0.96594 0.90775 1.09548 1.17292 0.82647 0.86210 0.76176 1.90806 1.87296 1.14299 1.51180 1.45822 1.04684 1.11012 1.73083 1.21311 0.82337 0.95391 0.97476 0.91657 1.21635 0.93155 0.97849 1.01707 1.21926 0.97320 0.99998 0.97011 1.20972 0.90749 0.94189 0.91643 1.44252 1.04820 1.20463 1.64314 1.20165 1.00823 0.92024 1.36378 0.94348 1.27263 0.95076 1.09162 0.94924 1.70902 1.40193 1.01453 1.45068 0.82860 0.75826 0.70403 0.76981 1.21010 1.20464 1.20504 1.21092 0.87217 0.95225 0.94489 1.74145 0.98462 1.15039 1.16949 1.84742 1.10722 1.34150 1.65255 0.87781 0.86942 0.87208 0.79378 0.74803 0.90518 0.89105 0.88897 0.92869 0.96857 0.93345 0.93468 0.95233 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 71.24 0.74 0.46 16 2 C -0.01 -0.13 7.47 25.01 0.19 0.05 16 3 C -0.21 -4.39 10.92 22.60 0.25 -4.15 16 4 C -0.05 -1.28 7.19 42.96 0.31 -0.97 16 5 C 0.59 20.69 7.81 86.93 0.68 21.36 16 6 O -0.56 -23.91 16.61 -3.67 -0.06 -23.97 16 7 N -0.69 -22.36 5.08 -445.27 -2.26 -24.62 16 8 C 0.14 5.30 2.59 44.93 0.12 5.42 16 9 H 0.07 2.82 7.58 -2.39 -0.02 2.81 16 10 C -0.11 -3.27 5.36 30.62 0.16 -3.10 16 11 C -0.12 -4.42 6.08 30.67 0.19 -4.24 16 12 C 0.15 7.13 4.70 86.36 0.41 7.54 16 13 N -0.61 -32.87 2.84 -699.94 -1.99 -34.85 16 14 C -0.36 -21.91 9.48 84.03 0.80 -21.11 16 15 H 0.04 2.40 7.94 -2.91 -0.02 2.37 16 16 C -0.07 -3.98 4.69 84.86 0.40 -3.58 16 17 N -0.94 -58.08 12.45 21.65 0.27 -57.81 16 18 Si 1.12 52.94 29.98 68.60 2.06 55.00 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.15 6.88 6.06 86.22 0.52 7.40 16 23 N -0.35 -8.70 11.84 -49.51 -0.59 -9.28 16 24 O 0.13 2.52 11.18 71.91 0.80 3.32 16 25 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.42 11.08 8.36 -92.71 -0.78 10.31 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.01 0.64 7.85 -2.39 -0.02 0.63 16 35 H 0.05 2.61 6.38 -2.39 -0.02 2.59 16 36 H 0.26 16.10 6.71 -92.71 -0.62 15.48 16 37 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -77.35 320.07 3.44 -73.90 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.45 Total: 13.23 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.76 Total: 5.08 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -4.57 Total: -126.56 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.74 Total: -20.65 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 2.06 Total: 55.00 kcal Total: -77.35 3.44 -73.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006643756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.045 kcal (2) G-P(sol) polarization free energy of solvation -77.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds