Wall clock time and date at job start Tue Mar 31 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34258 * 126.52539 * 2 1 4 4 C 1.34049 * 108.22605 * 179.97438 * 3 2 1 5 5 N 1.29931 * 109.24182 * 359.74754 * 4 3 2 6 6 C 1.36061 * 108.47872 * 0.40191 * 5 4 3 7 7 C 1.47422 * 126.44849 * 179.85926 * 6 5 4 8 8 O 1.21611 * 120.00160 * 179.69255 * 7 6 5 9 9 N 1.34780 * 120.00184 * 359.69732 * 7 6 5 10 10 C 1.46498 * 120.00263 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.49310 * 325.06254 * 10 9 7 12 12 C 1.53036 * 109.49862 * 205.00015 * 10 9 7 13 13 C 1.53037 * 109.54089 * 178.68021 * 12 10 9 14 14 C 1.53196 * 109.31249 * 61.35909 * 13 12 10 15 15 N 1.46921 * 108.77733 * 305.36869 * 14 13 12 16 16 C 1.36938 * 120.63022 * 233.32911 * 15 14 13 17 17 H 1.08006 * 119.99609 * 151.88228 * 16 15 14 18 18 C 1.38805 * 120.00279 * 331.88876 * 16 15 14 19 19 N 1.31622 * 119.99962 * 343.10871 * 18 16 15 20 20 Si 1.86795 * 120.00332 * 163.11328 * 18 16 15 21 21 H 1.48499 * 109.47139 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47582 * 119.99782 * 20 18 16 23 23 H 1.48509 * 109.47245 * 239.99922 * 20 18 16 24 24 C 1.46928 * 118.74007 * 53.60673 * 15 14 13 25 25 H 1.08997 * 109.46976 * 270.04336 * 1 2 3 26 26 H 1.09004 * 109.46953 * 30.04544 * 1 2 3 27 27 H 1.08992 * 109.47079 * 150.04177 * 1 2 3 28 28 H 1.08003 * 125.37694 * 180.02562 * 4 3 2 29 29 H 0.97001 * 119.99760 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.46423 * 58.65593 * 12 10 9 31 31 H 1.09006 * 109.44494 * 298.68872 * 12 10 9 32 32 H 1.08999 * 109.49917 * 301.41626 * 13 12 10 33 33 H 1.08993 * 109.49853 * 181.31007 * 13 12 10 34 34 H 1.09002 * 109.59015 * 185.57799 * 14 13 12 35 35 H 1.09004 * 109.58498 * 65.15568 * 14 13 12 36 36 H 0.96995 * 120.00418 * 180.02562 * 19 18 16 37 37 H 1.08996 * 109.58682 * 66.18047 * 24 15 14 38 38 H 1.08999 * 109.58927 * 186.60262 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6002 -0.6411 0.0063 6 6 2.3170 -1.0936 0.0006 7 6 1.8853 -2.5032 0.0012 8 8 0.7003 -2.7762 0.0013 9 7 2.8041 -3.4893 0.0018 10 6 2.3751 -4.8901 0.0018 11 1 1.4629 -4.9912 0.5899 12 6 3.4754 -5.7612 0.6121 13 6 3.0151 -7.2204 0.6428 14 6 2.7566 -7.7004 -0.7889 15 7 1.8073 -6.7815 -1.4316 16 6 0.6654 -7.2567 -2.0193 17 1 -0.2123 -6.6302 -2.0788 18 6 0.6360 -8.5437 -2.5386 19 7 1.7614 -9.1848 -2.7727 20 14 -1.0008 -9.3657 -2.9054 21 1 -2.1086 -8.4406 -2.5559 22 1 -1.0732 -9.7020 -4.3500 23 1 -1.1219 -10.6083 -2.1012 24 6 2.1094 -5.3436 -1.4371 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8903 -0.5131 28 1 4.4490 1.2978 0.0011 29 1 3.7493 -3.2716 0.0014 30 1 3.6837 -5.4248 1.6277 31 1 4.3800 -5.6785 0.0095 32 1 2.0967 -7.3001 1.2244 33 1 3.7898 -7.8368 1.0988 34 1 2.3347 -8.7052 -0.7670 35 1 3.6931 -7.7072 -1.3466 36 1 1.7409 -10.0840 -3.1359 37 1 2.9931 -5.1582 -2.0477 38 1 1.2605 -4.7934 -1.8428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006873221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:34 Heat of formation + Delta-G solvation = -22.431261 kcal Electronic energy + Delta-G solvation = -21862.115159 eV Core-core repulsion = 18512.672303 eV Total energy + Delta-G solvation = -3349.442856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.43145 -40.88113 -38.97223 -36.06523 -35.79800 -34.11249 -33.36877 -32.35845 -30.56330 -28.24567 -27.27032 -25.24083 -23.90435 -23.64575 -22.57162 -21.53096 -20.99372 -19.15410 -18.72479 -17.90196 -17.28633 -17.10899 -16.67181 -16.11317 -15.77504 -15.61452 -15.29329 -15.11217 -14.83775 -14.47345 -14.18390 -14.04746 -13.94780 -13.42643 -13.35561 -13.04050 -12.76995 -12.60579 -12.40997 -12.13034 -11.97735 -11.86190 -11.76108 -11.61492 -11.33299 -11.10864 -10.63460 -10.23868 -9.89001 -8.70761 -7.90997 -5.37616 0.04833 1.07274 1.44320 1.45776 1.56841 1.58173 2.08166 2.23612 2.50481 3.11008 3.23466 3.63924 3.66704 3.78750 3.90929 4.07974 4.23059 4.24587 4.40949 4.45646 4.53827 4.57923 4.77379 4.86695 4.89658 4.99010 5.06282 5.11112 5.14175 5.22093 5.24409 5.43612 5.53198 5.62263 5.74645 6.31029 6.36459 6.62202 7.10536 7.14015 7.80411 8.31612 9.15054 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.004168 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.802823 B = 6715.592061 C = 7426.535663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 O -0.198 6.198 4 C 0.197 3.803 5 N -0.494 5.494 6 C -0.105 4.105 7 C 0.593 3.407 8 O -0.565 6.565 9 N -0.695 5.695 10 C 0.142 3.858 11 H 0.066 0.934 12 C -0.105 4.105 13 C -0.128 4.128 14 C 0.172 3.828 15 N -0.606 5.606 16 C -0.269 4.269 17 H 0.055 0.945 18 C -0.043 4.043 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.283 1.283 24 C 0.146 3.854 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.308 0.692 29 H 0.414 0.586 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.003 0.997 36 H 0.252 0.748 37 H 0.016 0.984 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 20.193 8.824 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.012 4.012 3 O -0.084 6.084 4 C -0.031 4.031 5 N -0.223 5.223 6 C -0.224 4.224 7 C 0.380 3.620 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.036 3.964 11 H 0.084 0.916 12 C -0.143 4.143 13 C -0.167 4.167 14 C 0.046 3.954 15 N -0.330 5.330 16 C -0.399 4.399 17 H 0.073 0.927 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.019 3.981 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.109 0.891 28 H 0.322 0.678 29 H 0.251 0.749 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.915 19.450 8.763 21.892 hybrid contribution -0.717 -0.286 -0.649 1.009 sum 4.198 19.164 8.113 21.229 Atomic orbital electron populations 1.20646 0.81506 1.05651 1.05491 1.24029 0.96032 0.83218 0.97876 1.84414 1.19068 1.35463 1.69499 1.29210 0.85827 0.90750 0.97328 1.70684 1.21067 1.12022 1.18507 1.21310 0.90216 0.94773 1.16053 1.17120 0.85310 0.83702 0.75887 1.90787 1.17552 1.83896 1.52280 1.45754 1.10302 1.05275 1.73225 1.21349 0.98483 0.79170 0.97388 0.91622 1.21613 0.96913 0.94453 1.01329 1.22011 1.00978 0.95809 0.97944 1.20726 0.90780 0.94091 0.89756 1.44244 1.23330 1.01147 1.64284 1.19458 0.89909 0.98805 1.31707 0.92677 1.25758 0.99996 0.99563 0.98614 1.70179 1.26373 1.13194 1.47849 0.85215 0.79844 0.78279 0.77156 1.19681 1.21509 1.20958 1.21189 0.97163 0.85342 0.94405 0.87794 0.87474 0.89129 0.67778 0.74881 0.89631 0.90965 0.93028 0.89598 0.92513 0.97858 0.93841 0.96658 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 9.88 71.24 0.70 -0.74 16 2 C 0.05 1.04 7.44 25.19 0.19 1.22 16 3 O -0.20 -3.43 10.73 0.38 0.00 -3.43 16 4 C 0.20 2.74 13.19 130.52 1.72 4.47 16 5 N -0.49 -11.25 11.06 -305.16 -3.37 -14.63 16 6 C -0.11 -2.91 6.99 40.41 0.28 -2.63 16 7 C 0.59 20.22 7.78 86.66 0.67 20.89 16 8 O -0.57 -22.68 14.46 -4.07 -0.06 -22.74 16 9 N -0.70 -22.41 5.08 -445.43 -2.26 -24.67 16 10 C 0.14 5.34 2.60 45.07 0.12 5.46 16 11 H 0.07 2.80 7.58 -2.38 -0.02 2.78 16 12 C -0.11 -3.35 5.35 30.62 0.16 -3.19 16 13 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 14 C 0.17 8.40 5.29 86.36 0.46 8.86 16 15 N -0.61 -32.39 2.99 -699.10 -2.09 -34.49 16 16 C -0.27 -15.80 9.58 84.03 0.81 -15.00 16 17 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 18 C -0.04 -2.52 4.92 84.86 0.42 -2.10 16 19 N -0.93 -55.92 11.20 21.65 0.24 -55.68 16 20 Si 0.97 46.48 29.59 68.60 2.03 48.51 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.15 6.79 6.09 86.36 0.53 7.31 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 2.22 6.48 -2.39 -0.02 2.20 16 28 H 0.31 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.41 11.42 8.33 -92.71 -0.77 10.65 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.03 1.66 7.93 -2.39 -0.02 1.64 16 Total: -1.00 -75.25 317.41 1.04 -74.20 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.31 Total: 12.89 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.24 Total: 20.03 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -7.49 Total: -129.46 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.25 1.04 -74.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006873221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.772 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds