Wall clock time and date at job start Tue Mar 31 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29930 * 125.37808 * 2 1 4 4 C 1.36065 * 108.47696 * 180.26902 * 3 2 1 5 5 C 1.47425 * 126.45144 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99801 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99614 * 0.03747 * 5 4 3 8 8 C 1.46502 * 119.99650 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.49801 * 324.93715 * 8 7 5 10 10 C 1.53038 * 109.49741 * 204.84420 * 8 7 5 11 11 C 1.53035 * 109.54004 * 178.68570 * 10 8 7 12 12 C 1.53189 * 109.31417 * 61.35844 * 11 10 8 13 13 N 1.46920 * 108.77645 * 305.36877 * 12 11 10 14 14 C 1.36942 * 120.63060 * 233.62534 * 13 12 11 15 15 H 1.08008 * 119.99500 * 27.67085 * 14 13 12 16 16 C 1.38806 * 120.00337 * 207.66358 * 14 13 12 17 17 N 1.31622 * 119.99835 * 17.36339 * 16 14 13 18 18 Si 1.86806 * 120.00336 * 197.36576 * 16 14 13 19 19 H 1.48496 * 109.47109 * 90.00011 * 18 16 14 20 20 H 1.48493 * 109.47028 * 210.00035 * 18 16 14 21 21 H 1.48499 * 109.46781 * 329.99966 * 18 16 14 22 22 C 1.46921 * 118.74117 * 53.60631 * 13 12 11 23 23 C 1.36099 * 107.10276 * 0.02562 * 4 3 2 24 24 O 1.34045 * 125.37444 * 180.31387 * 2 1 3 25 25 H 1.08992 * 109.47057 * 179.71282 * 1 2 3 26 26 H 1.09000 * 109.46569 * 299.71648 * 1 2 3 27 27 H 1.08998 * 109.46960 * 59.70696 * 1 2 3 28 28 H 0.96994 * 120.00629 * 0.02562 * 7 5 4 29 29 H 1.09008 * 109.45725 * 298.70018 * 10 8 7 30 30 H 1.08997 * 109.46475 * 58.65942 * 10 8 7 31 31 H 1.09000 * 109.49542 * 301.40724 * 11 10 8 32 32 H 1.09000 * 109.50069 * 181.31661 * 11 10 8 33 33 H 1.09003 * 109.59066 * 185.58049 * 12 11 10 34 34 H 1.09003 * 109.70280 * 65.22535 * 12 11 10 35 35 H 0.97000 * 119.99847 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.59001 * 186.60361 * 22 13 12 37 37 H 1.09001 * 109.58683 * 66.18064 * 22 13 12 38 38 H 1.07994 * 126.52711 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0061 5 6 4.7440 1.5438 -0.0087 6 8 5.8605 1.0617 -0.0147 7 7 4.5879 2.8825 -0.0043 8 6 5.7633 3.7569 -0.0075 9 1 6.5601 3.2977 0.5777 10 6 5.3946 5.1105 0.6041 11 6 6.6299 6.0134 0.6313 12 6 7.1182 6.2472 -0.8018 13 7 7.3368 4.9447 -1.4453 14 6 8.5386 4.6490 -2.0314 15 1 9.4436 5.1181 -1.6742 16 6 8.5939 3.7463 -3.0844 17 7 7.4976 3.4359 -3.7434 18 14 10.2242 2.9719 -3.5664 19 1 10.4190 1.7131 -2.8033 20 1 10.2195 2.6733 -5.0210 21 1 11.3299 3.9140 -3.2580 22 6 6.2418 3.9652 -1.4477 23 6 3.5660 -0.6971 -0.0104 24 8 2.2831 -1.0930 -0.0060 25 1 -0.3633 -1.0276 -0.0052 26 1 -0.3632 0.5094 0.8925 27 1 -0.3633 0.5184 -0.8873 28 1 3.6974 3.2670 0.0011 29 1 4.6149 5.5798 0.0041 30 1 5.0305 4.9626 1.6208 31 1 7.4187 5.5335 1.2106 32 1 6.3723 6.9688 1.0883 33 1 8.0534 6.8068 -0.7825 34 1 6.3679 6.8086 -1.3587 35 1 7.5363 2.8054 -4.4794 36 1 6.5986 3.0190 -1.8547 37 1 5.4182 4.3394 -2.0559 38 1 4.4360 -1.3369 -0.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007190344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:25 Heat of formation + Delta-G solvation = 3.576362 kcal Electronic energy + Delta-G solvation = -21918.296422 eV Core-core repulsion = 18569.981341 eV Total energy + Delta-G solvation = -3348.315081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.45699 -39.29507 -37.24055 -34.94091 -34.05070 -32.62868 -32.30658 -30.00837 -28.95056 -27.84861 -25.23237 -24.26948 -22.18013 -21.92801 -21.23561 -20.06197 -19.32797 -17.90229 -16.97622 -16.71760 -16.34097 -15.54321 -14.92140 -14.44615 -14.21945 -13.99845 -13.93694 -13.55635 -13.40646 -13.32372 -12.97034 -12.79083 -12.36018 -12.27937 -11.84841 -11.29208 -10.98746 -10.87677 -10.72527 -10.70350 -10.44304 -10.21299 -10.03248 -9.90424 -9.61476 -9.47429 -9.03654 -8.49142 -8.39434 -6.62497 -5.71931 -3.15385 1.13953 2.02511 2.50609 3.40276 3.46405 3.52281 3.52656 3.62727 3.85687 4.56862 4.73327 4.88885 5.09335 5.09692 5.31125 5.39783 5.44208 5.53832 5.58156 5.65150 5.67137 5.74208 6.03958 6.11942 6.19935 6.37014 6.45953 6.53105 6.73760 6.80708 6.95542 7.00203 7.31384 7.42880 7.76463 7.86432 7.98863 8.51082 8.60404 9.26348 9.90567 10.45506 11.36032 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.004949 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.786324 B = 5656.801635 C = 6665.433461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.188 3.812 3 N -0.461 5.461 4 C -0.061 4.061 5 C 0.595 3.405 6 O -0.529 6.529 7 N -0.700 5.700 8 C 0.116 3.884 9 H 0.083 0.917 10 C -0.116 4.116 11 C -0.130 4.130 12 C 0.142 3.858 13 N -0.589 5.589 14 C -0.257 4.257 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.899 5.899 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.167 3.833 23 C 0.005 3.995 24 O -0.200 6.200 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.401 0.599 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.018 0.982 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -5.021 9.386 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.021 4.021 3 N -0.192 5.192 4 C -0.181 4.181 5 C 0.379 3.621 6 O -0.406 6.406 7 N -0.350 5.350 8 C 0.011 3.989 9 H 0.101 0.899 10 C -0.154 4.154 11 C -0.170 4.170 12 C 0.016 3.984 13 N -0.311 5.311 14 C -0.386 4.386 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.543 5.543 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.040 3.960 23 C -0.068 4.068 24 O -0.086 6.086 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.235 0.765 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.036 0.964 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.882 -4.832 9.218 17.350 hybrid contribution 0.625 -0.975 -0.361 1.213 sum -13.257 -5.806 8.857 16.968 Atomic orbital electron populations 1.20269 0.81037 1.04746 1.05226 1.26308 0.96631 0.78492 1.00634 1.70735 1.00928 1.29958 1.17595 1.22011 0.92103 0.93210 1.10749 1.16715 0.85957 0.82236 0.77183 1.90867 1.24056 1.75217 1.50427 1.45876 1.10740 1.05182 1.73169 1.22050 0.86349 0.88473 1.02067 0.89855 1.21671 0.98680 0.95556 0.99485 1.21997 0.96990 0.97986 1.00037 1.20959 0.98240 0.88781 0.90452 1.43972 1.12604 1.09730 1.64836 1.19173 0.84942 1.24265 1.10230 0.91524 1.25033 0.96955 1.01600 0.95680 1.70027 1.26918 1.36028 1.21357 0.86295 0.83474 0.79803 0.77239 1.21254 1.21803 1.20394 1.21098 0.89767 0.96157 0.89018 1.25286 0.84582 0.95877 1.01101 1.84370 1.16850 1.37891 1.69526 0.89346 0.88438 0.88333 0.76472 0.92146 0.93027 0.92090 0.92573 0.92616 0.96364 0.93674 0.88691 0.96394 0.75293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.19 2.15 8.30 -13.08 -0.11 2.04 16 3 N -0.46 -6.65 11.06 -7.65 -0.08 -6.73 16 4 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 5 C 0.60 11.55 7.78 -12.52 -0.10 11.45 16 6 O -0.53 -12.11 16.55 5.27 0.09 -12.03 16 7 N -0.70 -12.88 5.08 -54.76 -0.28 -13.16 16 8 C 0.12 2.38 2.60 -67.81 -0.18 2.20 16 9 H 0.08 1.90 7.58 -51.92 -0.39 1.51 16 10 C -0.12 -1.97 5.35 -26.69 -0.14 -2.11 16 11 C -0.13 -2.27 6.08 -26.62 -0.16 -2.43 16 12 C 0.14 3.01 6.52 -3.72 -0.02 2.99 16 13 N -0.59 -15.32 2.99 -172.33 -0.52 -15.84 16 14 C -0.26 -7.33 9.58 -15.06 -0.14 -7.48 16 15 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 16 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 17 N -0.90 -27.37 11.19 55.49 0.62 -26.75 16 18 Si 0.90 22.78 29.59 -169.99 -5.03 17.75 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.17 4.21 4.89 -3.72 -0.02 4.19 16 23 C 0.00 0.07 11.95 29.96 0.36 0.42 16 24 O -0.20 -2.39 10.73 6.52 0.07 -2.32 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.40 6.46 8.33 -40.82 -0.34 6.12 16 29 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.09 2.81 6.03 -51.93 -0.31 2.49 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.23 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -34.75 321.38 -6.33 -41.08 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.24 Total: 3.29 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -0.80 Total: 9.86 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.26 Total: -62.48 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.16 Total: -14.35 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.75 -6.33 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007190344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.658 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds