Wall clock time and date at job start Tue Mar 31 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29930 * 125.37808 * 2 1 4 4 C 1.36065 * 108.47696 * 180.26902 * 3 2 1 5 5 C 1.47425 * 126.45144 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99801 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99614 * 0.03747 * 5 4 3 8 8 C 1.46502 * 119.99650 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.49801 * 324.93715 * 8 7 5 10 10 C 1.53038 * 109.49741 * 204.84420 * 8 7 5 11 11 C 1.53035 * 109.54004 * 178.68570 * 10 8 7 12 12 C 1.53189 * 109.31417 * 61.35844 * 11 10 8 13 13 N 1.46920 * 108.77645 * 305.36877 * 12 11 10 14 14 C 1.36942 * 120.63060 * 233.62534 * 13 12 11 15 15 H 1.08008 * 119.99500 * 27.67085 * 14 13 12 16 16 C 1.38806 * 120.00337 * 207.66358 * 14 13 12 17 17 N 1.31622 * 119.99835 * 17.36339 * 16 14 13 18 18 Si 1.86806 * 120.00336 * 197.36576 * 16 14 13 19 19 H 1.48496 * 109.47109 * 90.00011 * 18 16 14 20 20 H 1.48493 * 109.47028 * 210.00035 * 18 16 14 21 21 H 1.48499 * 109.46781 * 329.99966 * 18 16 14 22 22 C 1.46921 * 118.74117 * 53.60631 * 13 12 11 23 23 C 1.36099 * 107.10276 * 0.02562 * 4 3 2 24 24 O 1.34045 * 125.37444 * 180.31387 * 2 1 3 25 25 H 1.08992 * 109.47057 * 179.71282 * 1 2 3 26 26 H 1.09000 * 109.46569 * 299.71648 * 1 2 3 27 27 H 1.08998 * 109.46960 * 59.70696 * 1 2 3 28 28 H 0.96994 * 120.00629 * 0.02562 * 7 5 4 29 29 H 1.09008 * 109.45725 * 298.70018 * 10 8 7 30 30 H 1.08997 * 109.46475 * 58.65942 * 10 8 7 31 31 H 1.09000 * 109.49542 * 301.40724 * 11 10 8 32 32 H 1.09000 * 109.50069 * 181.31661 * 11 10 8 33 33 H 1.09003 * 109.59066 * 185.58049 * 12 11 10 34 34 H 1.09003 * 109.70280 * 65.22535 * 12 11 10 35 35 H 0.97000 * 119.99847 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.59001 * 186.60361 * 22 13 12 37 37 H 1.09001 * 109.58683 * 66.18064 * 22 13 12 38 38 H 1.07994 * 126.52711 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0061 5 6 4.7440 1.5438 -0.0087 6 8 5.8605 1.0617 -0.0147 7 7 4.5879 2.8825 -0.0043 8 6 5.7633 3.7569 -0.0075 9 1 6.5601 3.2977 0.5777 10 6 5.3946 5.1105 0.6041 11 6 6.6299 6.0134 0.6313 12 6 7.1182 6.2472 -0.8018 13 7 7.3368 4.9447 -1.4453 14 6 8.5386 4.6490 -2.0314 15 1 9.4436 5.1181 -1.6742 16 6 8.5939 3.7463 -3.0844 17 7 7.4976 3.4359 -3.7434 18 14 10.2242 2.9719 -3.5664 19 1 10.4190 1.7131 -2.8033 20 1 10.2195 2.6733 -5.0210 21 1 11.3299 3.9140 -3.2580 22 6 6.2418 3.9652 -1.4477 23 6 3.5660 -0.6971 -0.0104 24 8 2.2831 -1.0930 -0.0060 25 1 -0.3633 -1.0276 -0.0052 26 1 -0.3632 0.5094 0.8925 27 1 -0.3633 0.5184 -0.8873 28 1 3.6974 3.2670 0.0011 29 1 4.6149 5.5798 0.0041 30 1 5.0305 4.9626 1.6208 31 1 7.4187 5.5335 1.2106 32 1 6.3723 6.9688 1.0883 33 1 8.0534 6.8068 -0.7825 34 1 6.3679 6.8086 -1.3587 35 1 7.5363 2.8054 -4.4794 36 1 6.5986 3.0190 -1.8547 37 1 5.4182 4.3394 -2.0559 38 1 4.4360 -1.3369 -0.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007190344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:25 Heat of formation + Delta-G solvation = -24.015182 kcal Electronic energy + Delta-G solvation = -21919.492881 eV Core-core repulsion = 18569.981341 eV Total energy + Delta-G solvation = -3349.511540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.47093 -40.87961 -38.95956 -36.07407 -35.77131 -34.43591 -33.16981 -31.93795 -30.59770 -28.73513 -27.27220 -25.60198 -23.96754 -23.33854 -22.37121 -21.55117 -20.94924 -19.18885 -18.75578 -17.95836 -17.48361 -17.26347 -16.75562 -15.96876 -15.81241 -15.46114 -15.27936 -14.89751 -14.81161 -14.68607 -14.16354 -14.04182 -13.89059 -13.51361 -13.26805 -12.95220 -12.70415 -12.57439 -12.33111 -12.29091 -12.05395 -11.92292 -11.75361 -11.66798 -11.30680 -11.20512 -10.58782 -10.26448 -9.98669 -8.72457 -7.90926 -5.37301 0.03506 0.94981 1.40401 1.45785 1.52018 1.56043 2.03519 2.22949 2.48229 2.87307 3.25407 3.62958 3.77200 3.80487 3.93836 4.10556 4.23856 4.37853 4.45131 4.50885 4.56715 4.69847 4.74711 4.79331 4.84464 4.89940 5.07204 5.16677 5.18458 5.25106 5.28753 5.37553 5.50418 5.59877 5.72316 6.27985 6.36168 6.59750 7.07522 7.13757 7.82234 8.32081 9.14318 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.004949 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.786324 B = 5656.801635 C = 6665.433461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.202 3.798 3 N -0.488 5.488 4 C -0.096 4.096 5 C 0.591 3.409 6 O -0.575 6.575 7 N -0.692 5.692 8 C 0.129 3.871 9 H 0.057 0.943 10 C -0.107 4.107 11 C -0.120 4.120 12 C 0.135 3.865 13 N -0.610 5.610 14 C -0.266 4.266 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.293 1.293 20 H -0.291 1.291 21 H -0.260 1.260 22 C 0.180 3.820 23 C 0.021 3.979 24 O -0.194 6.194 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.414 0.586 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.247 0.753 36 H 0.045 0.955 37 H -0.003 1.003 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.135 -4.767 10.954 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.007 4.007 3 N -0.219 5.219 4 C -0.214 4.214 5 C 0.377 3.623 6 O -0.455 6.455 7 N -0.342 5.342 8 C 0.023 3.977 9 H 0.076 0.924 10 C -0.145 4.145 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.220 1.220 20 H -0.218 1.218 21 H -0.184 1.184 22 C 0.053 3.947 23 C -0.053 4.053 24 O -0.080 6.080 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.250 0.750 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -15.578 -4.521 10.816 19.496 hybrid contribution 1.034 -1.057 -0.844 1.703 sum -14.544 -5.578 9.972 18.495 Atomic orbital electron populations 1.20641 0.77069 1.06918 1.06592 1.27450 0.98282 0.77481 0.97498 1.70694 1.00259 1.31353 1.19563 1.21626 0.91944 0.93709 1.14145 1.17195 0.86505 0.82670 0.75891 1.90827 1.26174 1.75992 1.52551 1.45742 1.10720 1.04980 1.72766 1.21642 0.86667 0.90862 0.98494 0.92433 1.21648 0.98919 0.92784 1.01153 1.21898 0.96766 1.00135 0.97114 1.21197 0.98762 0.86571 0.92485 1.44259 1.11986 1.11875 1.65215 1.19558 0.86288 1.23931 1.09819 0.91093 1.25823 1.00103 1.02535 0.96171 1.70190 1.28963 1.36800 1.21980 0.85312 0.80288 0.78684 0.76535 1.21999 1.21782 1.18426 1.20760 0.88791 0.93641 0.91527 1.25620 0.85683 0.95155 0.98837 1.84427 1.16238 1.38031 1.69329 0.86795 0.86601 0.87132 0.74964 0.90952 0.89688 0.92713 0.88212 0.92332 0.96102 0.94389 0.93678 0.98534 0.73486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.20 4.17 8.30 88.39 0.73 4.90 16 3 N -0.49 -13.59 11.06 -293.03 -3.24 -16.83 16 4 C -0.10 -3.09 6.99 40.41 0.28 -2.81 16 5 C 0.59 23.75 7.78 86.66 0.67 24.43 16 6 O -0.58 -27.76 16.55 -4.06 -0.07 -27.82 16 7 N -0.69 -25.90 5.08 -445.43 -2.26 -28.16 16 8 C 0.13 5.39 2.60 45.07 0.12 5.51 16 9 H 0.06 2.71 7.58 -2.38 -0.02 2.69 16 10 C -0.11 -3.40 5.35 30.62 0.16 -3.23 16 11 C -0.12 -3.86 6.08 30.67 0.19 -3.67 16 12 C 0.13 5.60 6.52 86.36 0.56 6.16 16 13 N -0.61 -32.42 2.99 -699.12 -2.09 -34.51 16 14 C -0.27 -15.54 9.58 84.03 0.81 -14.73 16 15 H 0.07 3.99 7.89 -2.91 -0.02 3.96 16 16 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 17 N -0.93 -59.37 11.19 21.65 0.24 -59.13 16 18 Si 0.96 48.14 29.59 68.60 2.03 50.17 16 19 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 20 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.18 9.48 4.89 86.36 0.42 9.90 16 23 C 0.02 0.55 11.95 67.32 0.80 1.36 16 24 O -0.19 -4.26 10.73 0.42 0.00 -4.25 16 25 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.41 13.22 8.33 -92.71 -0.77 12.44 16 29 H 0.07 2.16 8.14 -2.38 -0.02 2.15 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.04 2.82 6.03 -2.39 -0.01 2.81 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.25 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -80.10 321.38 0.84 -79.26 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.30 Total: 15.81 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 5.92 Total: 25.46 kcal Atomic # 7 Polarization: -131.27 SS G_CDS: -7.35 Total: -138.62 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.06 Total: -32.07 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -80.10 0.84 -79.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007190344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -80.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds