Wall clock time and date at job start Tue Mar 31 2020 01:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30022 * 127.33436 * 2 1 4 4 O 1.20654 * 112.29914 * 180.27134 * 3 2 1 5 5 C 1.33491 * 113.15794 * 359.73652 * 4 3 2 6 6 C 1.37359 * 106.34502 * 359.97438 * 5 4 3 7 7 C 1.47397 * 128.56767 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99836 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00314 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00279 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.49463 * 324.93116 * 10 9 7 12 12 C 1.53113 * 109.51329 * 204.87211 * 10 9 7 13 13 C 1.53045 * 109.50013 * 178.68082 * 12 10 9 14 14 C 1.53189 * 109.33767 * 61.34951 * 13 12 10 15 15 N 1.46923 * 108.77439 * 305.34450 * 14 13 12 16 16 C 1.36942 * 120.63344 * 233.63187 * 15 14 13 17 17 H 1.07993 * 120.00664 * 151.83927 * 16 15 14 18 18 C 1.38819 * 119.99744 * 331.83943 * 16 15 14 19 19 N 1.31619 * 119.99679 * 343.06993 * 18 16 15 20 20 Si 1.86797 * 120.00224 * 163.07134 * 18 16 15 21 21 H 1.48505 * 109.47181 * 59.99637 * 20 18 16 22 22 H 1.48500 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46886 * 300.00021 * 20 18 16 24 24 C 1.46924 * 118.74050 * 53.61439 * 15 14 13 25 25 H 1.08997 * 109.46925 * 270.14825 * 1 2 3 26 26 H 1.08998 * 109.47353 * 30.14647 * 1 2 3 27 27 H 1.08996 * 109.47162 * 150.15045 * 1 2 3 28 28 H 1.08003 * 126.83170 * 179.97438 * 5 4 3 29 29 H 0.97003 * 119.99592 * 0.02562 * 9 7 6 30 30 H 1.08995 * 109.50504 * 58.65842 * 12 10 9 31 31 H 1.08992 * 109.44660 * 298.67551 * 12 10 9 32 32 H 1.09001 * 109.49784 * 301.37559 * 13 12 10 33 33 H 1.08996 * 109.49621 * 181.31546 * 13 12 10 34 34 H 1.09001 * 109.59051 * 65.13732 * 14 13 12 35 35 H 1.09002 * 109.58751 * 185.41584 * 14 13 12 36 36 H 0.97009 * 119.99606 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.59131 * 66.17762 * 24 15 14 38 38 H 1.09005 * 109.58605 * 186.45878 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 -0.0053 5 6 3.6494 -0.6007 -0.0041 6 6 2.3992 -1.1696 0.0035 7 6 2.0401 -2.5992 0.0073 8 8 0.8705 -2.9323 0.0138 9 7 3.0079 -3.5371 0.0036 10 6 2.6510 -4.9579 0.0067 11 1 1.7497 -5.1052 0.6016 12 6 3.7993 -5.7723 0.6090 13 6 3.4129 -7.2528 0.6424 14 6 3.1680 -7.7455 -0.7873 15 7 2.1684 -6.8760 -1.4224 16 6 1.0444 -7.4079 -1.9959 17 1 0.1367 -6.8251 -2.0471 18 6 1.0718 -8.6965 -2.5116 19 7 2.2245 -9.2825 -2.7575 20 14 -0.5270 -9.5987 -2.8566 21 1 -1.3239 -8.8323 -3.8481 22 1 -0.2268 -10.9478 -3.3999 23 1 -1.3014 -9.7329 -1.5966 24 6 2.3975 -5.4247 -1.4301 25 1 -0.3633 0.0027 1.0276 26 1 -0.3634 0.8886 -0.5161 27 1 -0.3633 -0.8913 -0.5115 28 1 4.5966 -1.1195 -0.0084 29 1 3.9408 -3.2714 -0.0012 30 1 3.9982 -5.4260 1.6231 31 1 4.6938 -5.6440 -0.0004 32 1 2.5044 -7.3785 1.2313 33 1 4.2209 -7.8295 1.0925 34 1 4.0992 -7.7053 -1.3523 35 1 2.8000 -8.7712 -0.7623 36 1 2.2436 -10.1828 -3.1182 37 1 3.2658 -5.1950 -2.0476 38 1 1.5195 -4.9184 -1.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008386459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:52 Heat of formation + Delta-G solvation = 41.036855 kcal Electronic energy + Delta-G solvation = -21820.113402 eV Core-core repulsion = 18473.422730 eV Total energy + Delta-G solvation = -3346.690672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.07391 -39.63900 -37.38067 -34.63617 -34.39435 -32.77808 -31.94244 -30.49267 -29.11933 -28.44225 -25.31301 -24.81588 -22.21567 -21.98442 -21.45074 -20.29224 -19.51770 -18.17105 -17.89316 -16.80052 -16.54645 -15.79343 -14.98276 -14.78485 -14.56573 -14.01773 -13.69859 -13.49048 -13.37184 -13.26833 -13.10965 -12.61313 -12.43620 -12.42239 -11.88291 -11.45381 -11.13591 -10.94142 -10.79791 -10.30777 -10.27680 -10.12372 -10.05842 -9.94729 -9.90736 -9.69055 -9.64999 -8.91707 -8.42568 -6.69187 -5.79832 -3.22558 0.91089 1.64746 2.74916 3.21828 3.27616 3.40720 3.45329 3.48408 3.89616 4.13371 4.50965 4.68640 4.86427 5.13561 5.24409 5.34826 5.43482 5.46640 5.50231 5.57572 5.59573 5.65773 6.02290 6.04109 6.10267 6.18513 6.46811 6.56307 6.59252 6.64352 6.78964 6.93126 7.32643 7.58683 7.62230 7.81852 8.01705 8.27519 8.44849 9.20751 9.82734 10.38238 11.28937 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.004118 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.940302 B = 6797.323906 C = 7520.452790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.363 5.363 4 O 0.095 5.905 5 C -0.012 4.012 6 C -0.246 4.246 7 C 0.589 3.411 8 O -0.522 6.522 9 N -0.714 5.714 10 C 0.127 3.873 11 H 0.089 0.911 12 C -0.115 4.115 13 C -0.140 4.140 14 C 0.167 3.833 15 N -0.587 5.587 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.142 3.858 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.225 0.775 29 H 0.393 0.607 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.017 0.983 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 14.642 7.571 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 N -0.071 5.071 4 O 0.036 5.964 5 C -0.094 4.094 6 C -0.254 4.254 7 C 0.374 3.626 8 O -0.398 6.398 9 N -0.365 5.365 10 C 0.022 3.978 11 H 0.107 0.893 12 C -0.153 4.153 13 C -0.180 4.180 14 C 0.042 3.958 15 N -0.310 5.310 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.014 3.986 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.242 0.758 29 H 0.226 0.774 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.661 15.513 7.482 17.843 hybrid contribution -0.138 -1.235 -0.227 1.264 sum 4.523 14.278 7.255 16.642 Atomic orbital electron populations 1.20288 0.84826 1.04555 1.03918 1.24904 0.99045 0.86325 0.98998 1.73672 0.89260 1.23624 1.20584 1.84553 1.21609 1.23059 1.67226 1.26402 1.00330 0.84074 0.98584 1.22522 0.92760 0.95993 1.14081 1.16829 0.85856 0.82837 0.77028 1.90827 1.18097 1.81697 1.49229 1.45980 1.08531 1.07149 1.74802 1.21837 0.98710 0.76548 1.00739 0.89317 1.21694 0.97334 0.96943 0.99308 1.22185 1.00310 0.93673 1.01791 1.20837 0.91553 0.96474 0.86982 1.43981 1.23239 0.99209 1.64546 1.19182 0.88657 0.98387 1.32019 0.91586 1.25029 0.96649 0.99325 0.98462 1.70027 1.23422 1.14566 1.46826 0.86348 0.83267 0.78870 0.78189 1.20826 1.21624 1.20927 1.21180 0.98834 0.86841 0.91702 0.89790 0.90512 0.88319 0.75831 0.77414 0.93011 0.92173 0.92363 0.92644 0.96286 0.89264 0.93587 0.96478 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.14 36.00 0.37 -0.51 16 2 C 0.07 0.88 7.58 -79.76 -0.60 0.28 16 3 N -0.36 -4.54 12.01 34.78 0.42 -4.12 16 4 O 0.09 0.98 11.06 18.66 0.21 1.19 16 5 C -0.01 -0.10 11.85 30.41 0.36 0.26 16 6 C -0.25 -2.99 6.47 -102.89 -0.67 -3.65 16 7 C 0.59 8.76 7.78 -12.53 -0.10 8.66 16 8 O -0.52 -9.86 15.36 5.27 0.08 -9.78 16 9 N -0.71 -9.46 5.08 -54.74 -0.28 -9.74 16 10 C 0.13 2.15 2.60 -67.78 -0.18 1.97 16 11 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 12 C -0.11 -1.73 5.36 -26.65 -0.14 -1.87 16 13 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 14 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 15 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16 16 C -0.25 -7.03 9.58 -15.05 -0.14 -7.18 16 17 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 18 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 19 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 20 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.14 3.01 6.09 -3.71 -0.02 2.98 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.10 1.24 7.12 -51.93 -0.37 0.87 16 28 H 0.23 0.76 7.68 -52.48 -0.40 0.35 16 29 H 0.39 3.65 7.79 -40.82 -0.32 3.33 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -32.87 317.86 -6.24 -39.11 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.14 Total: 0.09 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.40 Total: 2.15 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.25 Total: -54.38 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.29 Total: -8.59 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.87 -6.24 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008386459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.149 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds