Wall clock time and date at job start Tue Mar 31 2020 01:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30022 * 127.33436 * 2 1 4 4 O 1.20654 * 112.29914 * 180.27134 * 3 2 1 5 5 C 1.33491 * 113.15794 * 359.73652 * 4 3 2 6 6 C 1.37359 * 106.34502 * 359.97438 * 5 4 3 7 7 C 1.47397 * 128.56767 * 179.97438 * 6 5 4 8 8 O 1.21610 * 119.99836 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00314 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00279 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.49463 * 324.93116 * 10 9 7 12 12 C 1.53113 * 109.51329 * 204.87211 * 10 9 7 13 13 C 1.53045 * 109.50013 * 178.68082 * 12 10 9 14 14 C 1.53189 * 109.33767 * 61.34951 * 13 12 10 15 15 N 1.46923 * 108.77439 * 305.34450 * 14 13 12 16 16 C 1.36942 * 120.63344 * 233.63187 * 15 14 13 17 17 H 1.07993 * 120.00664 * 151.83927 * 16 15 14 18 18 C 1.38819 * 119.99744 * 331.83943 * 16 15 14 19 19 N 1.31619 * 119.99679 * 343.06993 * 18 16 15 20 20 Si 1.86797 * 120.00224 * 163.07134 * 18 16 15 21 21 H 1.48505 * 109.47181 * 59.99637 * 20 18 16 22 22 H 1.48500 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46886 * 300.00021 * 20 18 16 24 24 C 1.46924 * 118.74050 * 53.61439 * 15 14 13 25 25 H 1.08997 * 109.46925 * 270.14825 * 1 2 3 26 26 H 1.08998 * 109.47353 * 30.14647 * 1 2 3 27 27 H 1.08996 * 109.47162 * 150.15045 * 1 2 3 28 28 H 1.08003 * 126.83170 * 179.97438 * 5 4 3 29 29 H 0.97003 * 119.99592 * 0.02562 * 9 7 6 30 30 H 1.08995 * 109.50504 * 58.65842 * 12 10 9 31 31 H 1.08992 * 109.44660 * 298.67551 * 12 10 9 32 32 H 1.09001 * 109.49784 * 301.37559 * 13 12 10 33 33 H 1.08996 * 109.49621 * 181.31546 * 13 12 10 34 34 H 1.09001 * 109.59051 * 65.13732 * 14 13 12 35 35 H 1.09002 * 109.58751 * 185.41584 * 14 13 12 36 36 H 0.97009 * 119.99606 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.59131 * 66.17762 * 24 15 14 38 38 H 1.09005 * 109.58605 * 186.45878 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 -0.0053 5 6 3.6494 -0.6007 -0.0041 6 6 2.3992 -1.1696 0.0035 7 6 2.0401 -2.5992 0.0073 8 8 0.8705 -2.9323 0.0138 9 7 3.0079 -3.5371 0.0036 10 6 2.6510 -4.9579 0.0067 11 1 1.7497 -5.1052 0.6016 12 6 3.7993 -5.7723 0.6090 13 6 3.4129 -7.2528 0.6424 14 6 3.1680 -7.7455 -0.7873 15 7 2.1684 -6.8760 -1.4224 16 6 1.0444 -7.4079 -1.9959 17 1 0.1367 -6.8251 -2.0471 18 6 1.0718 -8.6965 -2.5116 19 7 2.2245 -9.2825 -2.7575 20 14 -0.5270 -9.5987 -2.8566 21 1 -1.3239 -8.8323 -3.8481 22 1 -0.2268 -10.9478 -3.3999 23 1 -1.3014 -9.7329 -1.5966 24 6 2.3975 -5.4247 -1.4301 25 1 -0.3633 0.0027 1.0276 26 1 -0.3634 0.8886 -0.5161 27 1 -0.3633 -0.8913 -0.5115 28 1 4.5966 -1.1195 -0.0084 29 1 3.9408 -3.2714 -0.0012 30 1 3.9982 -5.4260 1.6231 31 1 4.6938 -5.6440 -0.0004 32 1 2.5044 -7.3785 1.2313 33 1 4.2209 -7.8295 1.0925 34 1 4.0992 -7.7053 -1.3523 35 1 2.8000 -8.7712 -0.7623 36 1 2.2436 -10.1828 -3.1182 37 1 3.2658 -5.1950 -2.0476 38 1 1.5195 -4.9184 -1.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008386459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:51 Heat of formation + Delta-G solvation = 17.930902 kcal Electronic energy + Delta-G solvation = -21821.115351 eV Core-core repulsion = 18473.422730 eV Total energy + Delta-G solvation = -3347.692621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.95705 -40.90180 -38.93046 -36.00432 -35.47627 -34.30714 -33.04547 -32.32769 -30.40459 -29.55855 -27.25172 -25.88847 -23.87744 -23.46304 -22.34114 -21.45321 -21.04874 -19.18294 -18.77663 -18.70469 -17.53423 -17.18781 -16.72132 -16.12765 -15.88161 -15.56660 -15.21094 -14.80941 -14.75385 -14.26097 -14.23119 -14.12125 -13.98780 -13.46720 -13.36988 -13.02239 -12.73350 -12.58044 -12.34635 -12.14762 -11.97064 -11.75495 -11.57701 -11.30607 -11.10875 -10.95744 -10.78778 -10.60774 -10.14375 -8.68416 -7.90597 -5.36128 0.09870 0.72175 1.44957 1.46733 1.54189 1.85444 2.15680 2.29321 2.51096 3.00544 3.23925 3.32149 3.71297 3.82067 3.87294 4.04324 4.13351 4.26968 4.43045 4.49734 4.57578 4.58881 4.62596 4.75505 4.83771 4.93376 5.03918 5.11572 5.15139 5.19077 5.29465 5.45612 5.56042 5.64074 5.78467 6.37097 6.52996 7.13208 7.18946 7.22072 7.83359 8.32399 9.14766 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.004118 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.940302 B = 6797.323906 C = 7520.452790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.380 5.380 4 O 0.100 5.900 5 C 0.037 3.963 6 C -0.282 4.282 7 C 0.591 3.409 8 O -0.573 6.573 9 N -0.696 5.696 10 C 0.144 3.856 11 H 0.059 0.941 12 C -0.103 4.103 13 C -0.131 4.131 14 C 0.171 3.829 15 N -0.607 5.607 16 C -0.270 4.270 17 H 0.052 0.948 18 C -0.041 4.041 19 N -0.928 5.928 20 Si 0.963 3.037 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.279 1.279 24 C 0.144 3.856 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.282 0.718 29 H 0.417 0.583 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 15.823 8.750 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 N -0.088 5.088 4 O 0.042 5.958 5 C -0.045 4.045 6 C -0.289 4.289 7 C 0.379 3.621 8 O -0.453 6.453 9 N -0.348 5.348 10 C 0.037 3.963 11 H 0.077 0.923 12 C -0.141 4.141 13 C -0.170 4.170 14 C 0.046 3.954 15 N -0.331 5.331 16 C -0.400 4.400 17 H 0.070 0.930 18 C -0.237 4.237 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.205 1.205 24 C 0.017 3.983 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.297 0.703 29 H 0.255 0.745 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.919 16.744 8.677 20.088 hybrid contribution -0.773 -1.540 -0.632 1.835 sum 6.146 15.204 8.046 18.267 Atomic orbital electron populations 1.20257 0.84787 1.04149 1.04281 1.25156 0.99683 0.86893 0.99340 1.73685 0.89890 1.23798 1.21438 1.84539 1.20730 1.24002 1.66552 1.27308 1.00817 0.82864 0.93499 1.22226 0.94483 0.94254 1.17973 1.17170 0.85229 0.84043 0.75704 1.90810 1.20323 1.82645 1.51525 1.45629 1.09716 1.05275 1.74209 1.21306 0.98931 0.78891 0.97139 0.92274 1.21629 0.96628 0.94132 1.01742 1.22022 1.01012 0.96242 0.97745 1.20722 0.90042 0.94716 0.89952 1.44211 1.22959 1.00936 1.65025 1.19358 0.89489 0.98921 1.32262 0.92987 1.25694 0.99513 0.99853 0.98672 1.70153 1.25015 1.14562 1.47622 0.85413 0.79832 0.77635 0.78006 1.20533 1.21234 1.20540 1.21228 0.97626 0.84756 0.94693 0.89099 0.89158 0.90363 0.70311 0.74488 0.89136 0.90094 0.93540 0.89629 0.97537 0.92907 0.93856 0.95823 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.14 71.23 0.72 -1.04 16 2 C 0.05 1.26 7.58 45.15 0.34 1.60 16 3 N -0.38 -8.79 12.01 -44.78 -0.54 -9.33 16 4 O 0.10 1.74 11.06 77.01 0.85 2.59 16 5 C 0.04 0.46 11.85 67.61 0.80 1.26 16 6 C -0.28 -6.26 6.47 -18.74 -0.12 -6.39 16 7 C 0.59 17.01 7.78 86.66 0.67 17.68 16 8 O -0.57 -22.34 15.36 -4.06 -0.06 -22.40 16 9 N -0.70 -16.66 5.08 -445.36 -2.26 -18.92 16 10 C 0.14 4.69 2.60 45.09 0.12 4.81 16 11 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 12 C -0.10 -2.74 5.36 30.65 0.16 -2.57 16 13 C -0.13 -4.43 6.08 30.67 0.19 -4.24 16 14 C 0.17 7.92 5.30 86.36 0.46 8.38 16 15 N -0.61 -31.03 2.99 -699.10 -2.09 -33.12 16 16 C -0.27 -15.54 9.58 84.03 0.81 -14.74 16 17 H 0.05 3.06 7.88 -2.91 -0.02 3.04 16 18 C -0.04 -2.34 4.92 84.86 0.42 -1.93 16 19 N -0.93 -54.61 11.19 21.65 0.24 -54.36 16 20 Si 0.96 45.92 29.59 68.60 2.03 47.95 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 C 0.14 6.15 6.09 86.36 0.53 6.67 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 2.10 7.12 -2.39 -0.02 2.08 16 28 H 0.28 -0.08 7.68 -2.91 -0.02 -0.10 16 29 H 0.42 5.75 7.79 -92.71 -0.72 5.03 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 36 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.03 1.36 7.93 -2.38 -0.02 1.34 16 Total: -1.00 -76.54 317.86 3.62 -72.92 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.36 Total: 5.16 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.09 Total: 9.50 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.65 Total: -115.72 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.79 Total: -19.81 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.54 3.62 -72.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008386459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.851 kcal (2) G-P(sol) polarization free energy of solvation -76.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds