Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62029 * 2 1 4 4 C 1.34485 * 108.70042 * 179.97438 * 3 2 1 5 5 C 1.34322 * 107.66708 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.44233 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47236 * 89.99612 * 6 5 4 8 8 O 1.21282 * 119.99968 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99807 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99806 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.91822 * 31.09777 * 10 9 7 12 12 C 1.55157 * 111.00374 * 155.00501 * 10 9 7 13 13 C 1.54321 * 103.10033 * 153.66359 * 12 10 9 14 14 N 1.47019 * 107.27531 * 337.71659 * 13 12 10 15 15 C 1.36931 * 125.65157 * 178.90454 * 14 13 12 16 16 H 1.07998 * 120.00396 * 180.02562 * 15 14 13 17 17 C 1.38821 * 119.99902 * 0.02562 * 15 14 13 18 18 N 1.31616 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47355 * 60.00007 * 19 17 15 21 21 H 1.48501 * 109.46905 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47337 * 299.99861 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 14 13 12 24 24 O 1.33964 * 125.61925 * 180.28316 * 2 1 3 25 25 H 1.09004 * 109.46533 * 90.02503 * 1 2 3 26 26 H 1.08989 * 109.47569 * 210.02681 * 1 2 3 27 27 H 1.09004 * 109.47114 * 330.02963 * 1 2 3 28 28 H 1.07993 * 126.16238 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47115 * 329.99642 * 6 5 4 30 30 H 1.08998 * 109.46906 * 209.99483 * 6 5 4 31 31 H 0.96996 * 120.00687 * 0.02562 * 9 7 6 32 32 H 1.09002 * 110.72219 * 35.21056 * 12 10 9 33 33 H 1.09003 * 110.71618 * 272.11669 * 12 10 9 34 34 H 1.09001 * 109.88480 * 97.13771 * 13 12 10 35 35 H 1.09004 * 109.87910 * 218.29695 * 13 12 10 36 36 H 0.96994 * 119.99831 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.36190 * 142.96411 * 23 14 13 38 38 H 1.08999 * 110.36356 * 265.28933 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5523 0.6674 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5550 0.0014 7 6 5.2004 -1.8483 1.4225 8 8 4.5592 -1.3889 2.3438 9 7 6.2760 -2.6219 1.6696 10 6 6.6711 -2.9074 3.0511 11 1 5.8013 -2.9306 3.7078 12 6 7.4692 -4.2351 3.1382 13 6 8.3407 -4.0375 4.3963 14 7 8.4572 -2.5897 4.6237 15 6 9.1335 -1.9957 5.6556 16 1 9.1597 -0.9190 5.7353 17 6 9.7855 -2.7776 6.5994 18 7 9.7532 -4.0898 6.5026 19 14 10.7075 -1.9673 8.0074 20 1 9.7645 -1.1478 8.8102 21 1 11.3127 -3.0137 8.8700 22 1 11.7791 -1.0961 7.4612 23 6 7.7244 -1.8832 3.5572 24 8 2.2872 -1.0890 -0.0054 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3634 -0.8896 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 4.4157 1.3161 0.0011 29 1 5.6085 -1.0442 -0.5116 30 1 4.5699 -2.4897 -0.5128 31 1 6.7886 -2.9896 0.9328 32 1 8.0927 -4.3690 2.2542 33 1 6.7953 -5.0825 3.2650 34 1 7.8646 -4.5105 5.2552 35 1 9.3289 -4.4680 4.2340 36 1 10.2090 -4.6360 7.1618 37 1 7.2303 -0.9984 3.9585 38 1 8.4027 -1.6068 2.7500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014705647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = -16.188280 kcal Electronic energy + Delta-G solvation = -21186.125597 eV Core-core repulsion = 17836.953457 eV Total energy + Delta-G solvation = -3349.172140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.32179 -40.91566 -38.91893 -35.76917 -35.64678 -34.25092 -33.66480 -31.54428 -30.84973 -28.87073 -27.09132 -26.18639 -23.52807 -22.58180 -22.09669 -21.80464 -21.36348 -19.07591 -18.42065 -18.02152 -17.48741 -17.13070 -16.67854 -16.42701 -15.98056 -15.61710 -14.97506 -14.96509 -14.55287 -14.17685 -14.09991 -13.90499 -13.80600 -13.72783 -13.33808 -13.09748 -12.95124 -12.74682 -12.40888 -12.28970 -12.13060 -12.09138 -11.82640 -11.60780 -11.57006 -11.07764 -10.72950 -10.12721 -9.66257 -8.93622 -7.88315 -5.24407 0.39317 1.44199 1.47775 1.53801 1.56302 1.59973 1.70949 2.22435 2.49632 3.16728 3.30226 3.58598 3.66496 3.75305 3.97518 4.02373 4.07678 4.18063 4.20937 4.40618 4.59376 4.63919 4.66529 4.69463 4.73310 4.86352 4.97031 5.01731 5.03521 5.09854 5.39287 5.40420 5.51601 5.63564 5.72455 6.17073 6.55979 6.71704 7.07568 7.25405 7.73252 8.36178 9.21549 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.003149 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.744729 B = 8890.344470 C = 9280.988758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.519 5.519 4 C -0.045 4.045 5 C -0.039 4.039 6 C -0.042 4.042 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.695 5.695 10 C 0.145 3.855 11 H 0.069 0.931 12 C -0.127 4.127 13 C 0.183 3.817 14 N -0.627 5.627 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.062 4.062 18 N -0.949 5.949 19 Si 0.979 3.021 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.275 1.275 23 C 0.128 3.872 24 O -0.211 6.211 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.197 0.803 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.423 0.577 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.018 0.982 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 2.207 -19.816 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.250 5.250 4 C -0.182 4.182 5 C -0.093 4.093 6 C -0.081 4.081 7 C 0.297 3.703 8 O -0.467 6.467 9 N -0.348 5.348 10 C 0.038 3.962 11 H 0.087 0.913 12 C -0.165 4.165 13 C 0.058 3.942 14 N -0.354 5.354 15 C -0.378 4.378 16 H 0.095 0.905 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.201 1.201 23 C 0.001 3.999 24 O -0.099 6.099 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.214 0.786 29 H 0.187 0.813 30 H 0.167 0.833 31 H 0.261 0.739 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.962 3.026 -19.004 23.775 hybrid contribution 1.247 -0.385 1.106 1.710 sum -12.715 2.641 -17.899 22.114 Atomic orbital electron populations 1.20524 0.78289 1.06153 1.06333 1.27258 0.98070 0.78129 0.98955 1.70419 1.02912 1.31443 1.20185 1.23388 0.95472 0.93695 1.05691 1.22998 0.83739 0.95223 1.07293 1.20224 0.92094 1.02447 0.93367 1.21105 0.79775 0.77479 0.91939 1.90763 1.54961 1.52688 1.48328 1.45637 1.29691 1.51345 1.08090 1.21847 0.95937 0.95226 0.83175 0.91277 1.22987 0.98292 0.96011 0.99231 1.20956 0.96086 0.83931 0.93273 1.44673 1.60302 1.02720 1.27717 1.19386 1.24846 0.91559 1.02021 0.90532 1.25647 1.02016 0.96257 1.01649 1.70145 1.48265 1.03818 1.37481 0.85146 0.78385 0.77029 0.78727 1.20677 1.21593 1.20065 1.22028 0.92503 0.94388 0.90932 1.84348 1.17106 1.38362 1.70093 0.86569 0.87999 0.87489 0.78603 0.81333 0.83335 0.73856 0.88479 0.89452 0.97133 0.96333 0.94171 0.96083 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.18 4.24 8.34 88.34 0.74 4.98 16 3 N -0.52 -14.24 11.29 -303.84 -3.43 -17.67 16 4 C -0.04 -1.12 11.80 83.39 0.98 -0.13 16 5 C -0.04 -0.91 5.88 24.79 0.15 -0.77 16 6 C -0.04 -0.63 6.25 29.10 0.18 -0.44 16 7 C 0.51 13.01 7.82 87.66 0.69 13.70 16 8 O -0.59 -22.38 15.67 -3.03 -0.05 -22.43 16 9 N -0.70 -16.09 5.21 -435.16 -2.27 -18.35 16 10 C 0.14 4.95 3.45 46.55 0.16 5.11 16 11 H 0.07 2.80 7.54 -2.39 -0.02 2.78 16 12 C -0.13 -4.17 6.58 31.78 0.21 -3.96 16 13 C 0.18 8.85 5.37 86.73 0.47 9.31 16 14 N -0.63 -32.99 3.40 -691.01 -2.35 -35.33 16 15 C -0.25 -14.44 10.28 84.04 0.86 -13.58 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 17 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 18 N -0.95 -57.23 10.31 21.65 0.22 -57.01 16 19 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 C 0.13 5.43 6.95 87.02 0.61 6.03 16 24 O -0.21 -5.31 10.78 -3.71 -0.04 -5.35 16 25 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.42 5.92 8.57 -92.71 -0.79 5.12 16 32 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.01 0.58 7.38 -2.39 -0.02 0.56 16 35 H 0.02 0.98 7.51 -2.38 -0.02 0.97 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -84.07 324.60 0.65 -83.42 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.28 Total: 6.98 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.25 Total: 17.18 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.82 Total: -128.37 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.09 Total: -27.78 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -84.07 0.65 -83.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014705647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.230 kcal (2) G-P(sol) polarization free energy of solvation -84.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds