Wall clock time and date at job start Tue Mar 31 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30126 * 126.70558 * 2 1 4 4 O 1.20886 * 111.98497 * 179.97438 * 3 2 1 5 5 C 1.34642 * 111.46467 * 359.97438 * 4 3 2 6 6 C 1.47509 * 126.94048 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00032 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00029 * 359.97008 * 6 5 4 9 9 C 1.46501 * 119.99936 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.88612 * 31.12178 * 9 8 6 11 11 C 1.55160 * 111.00381 * 155.00225 * 9 8 6 12 12 C 1.54321 * 102.94230 * 153.57928 * 11 9 8 13 13 N 1.47023 * 107.27019 * 337.80886 * 12 11 9 14 14 C 1.36944 * 125.64816 * 178.96569 * 13 12 11 15 15 H 1.07997 * 119.99830 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99744 * 359.96821 * 14 13 12 17 17 N 1.31618 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99561 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46953 * 90.00537 * 18 16 14 20 20 H 1.48507 * 109.47039 * 210.00329 * 18 16 14 21 21 H 1.48498 * 109.47694 * 330.00173 * 18 16 14 22 22 C 1.47425 * 108.70557 * 358.93825 * 13 12 11 23 23 C 1.36820 * 106.11193 * 359.72816 * 5 4 3 24 24 C 1.50701 * 128.07673 * 180.25295 * 23 5 4 25 25 H 1.09001 * 109.46953 * 90.02773 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02370 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03001 * 1 2 3 28 28 H 0.96998 * 120.00309 * 0.02562 * 8 6 5 29 29 H 1.08999 * 110.71593 * 271.93873 * 11 9 8 30 30 H 1.08997 * 110.71886 * 35.03736 * 11 9 8 31 31 H 1.09001 * 109.88460 * 97.22668 * 12 11 9 32 32 H 1.08995 * 109.88163 * 218.39027 * 12 11 9 33 33 H 0.96992 * 119.99903 * 179.97438 * 17 16 14 34 34 H 1.08994 * 110.36530 * 265.29404 * 22 13 12 35 35 H 1.09000 * 110.36321 * 142.97066 * 22 13 12 36 36 H 1.09005 * 109.47508 * 270.20722 * 24 23 5 37 37 H 1.09004 * 109.47230 * 30.20643 * 24 23 5 38 38 H 1.09003 * 109.47115 * 150.20443 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4540 0.7361 0.0005 5 6 3.6121 -0.6010 0.0015 6 6 4.8871 -1.3430 0.0028 7 8 4.8829 -2.5588 0.0041 8 7 6.0566 -0.6731 0.0026 9 6 7.3228 -1.4099 0.0045 10 1 7.2205 -2.3597 -0.5205 11 6 8.4642 -0.5559 -0.6081 12 6 9.7268 -1.1307 0.0677 13 7 9.2961 -1.7876 1.3105 14 6 10.1144 -2.4409 2.1931 15 1 9.6991 -2.8924 3.0818 16 6 11.4778 -2.5228 1.9451 17 7 11.9840 -1.9722 0.8621 18 14 12.5939 -3.4145 3.1486 19 1 12.6905 -4.8462 2.7665 20 1 13.9462 -2.8014 3.1171 21 1 12.0326 -3.3047 4.5191 22 6 7.8373 -1.6261 1.4496 23 6 2.3514 -1.1325 0.0078 24 6 1.9557 -2.5866 0.0166 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 6.0600 0.2969 0.0019 29 1 8.5096 -0.6914 -1.6887 30 1 8.3348 0.4970 -0.3579 31 1 10.2014 -1.8581 -0.5909 32 1 10.4241 -0.3248 0.2968 33 1 12.9367 -2.0291 0.6891 34 1 7.6091 -0.7576 2.0674 35 1 7.3954 -2.5251 1.8792 36 1 1.8611 -2.9437 -1.0089 37 1 2.7188 -3.1676 0.5347 38 1 1.0012 -2.7003 0.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014862663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:48 Heat of formation + Delta-G solvation = 47.601222 kcal Electronic energy + Delta-G solvation = -21496.324454 eV Core-core repulsion = 18149.918434 eV Total energy + Delta-G solvation = -3346.406020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.17214 -39.71894 -37.35277 -35.68859 -34.14321 -32.86473 -31.86719 -29.40005 -29.02853 -28.45155 -27.12856 -24.72566 -23.34103 -21.98558 -20.51708 -20.39340 -19.89497 -18.21801 -17.98515 -16.95384 -16.14263 -15.94769 -14.84334 -14.67109 -14.38545 -14.17423 -13.94639 -13.80751 -13.25589 -13.24109 -13.11445 -12.84300 -12.56857 -12.46127 -12.28617 -11.84238 -11.33911 -11.08883 -10.93709 -10.78864 -10.50193 -10.16708 -10.13374 -10.03545 -9.94817 -9.72636 -9.63290 -8.89566 -8.61217 -6.86161 -5.72710 -3.06519 0.67192 1.81257 2.52592 2.97414 3.21706 3.41211 3.46257 3.48014 3.81226 4.24580 4.49858 4.59589 4.71257 5.01490 5.11205 5.22241 5.29979 5.33103 5.41160 5.44446 5.56052 5.57525 5.68872 5.70236 5.74362 6.01872 6.11357 6.25908 6.38487 6.47757 6.62591 6.86125 7.40647 7.53413 7.55716 7.79736 7.89260 8.06509 8.23575 9.20296 9.80035 10.44390 11.39219 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039913 B = 0.003366 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.359901 B = 8315.951657 C = 8613.972948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.346 5.346 4 O 0.116 5.884 5 C -0.085 4.085 6 C 0.602 3.398 7 O -0.509 6.509 8 N -0.699 5.699 9 C 0.125 3.875 10 H 0.102 0.898 11 C -0.150 4.150 12 C 0.179 3.821 13 N -0.603 5.603 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.129 3.871 23 C -0.122 4.122 24 C -0.085 4.085 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.404 0.596 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.253 0.747 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.543 4.114 -4.162 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 N -0.048 5.048 4 O 0.044 5.956 5 C -0.151 4.151 6 C 0.385 3.615 7 O -0.385 6.385 8 N -0.349 5.349 9 C 0.021 3.979 10 H 0.120 0.880 11 C -0.188 4.188 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.001 3.999 23 C -0.127 4.127 24 C -0.142 4.142 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.239 0.761 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.507 4.490 -4.136 21.397 hybrid contribution 0.599 -0.558 0.591 1.010 sum -19.908 3.932 -3.545 20.600 Atomic orbital electron populations 1.20185 0.85388 1.03997 1.03577 1.23509 0.99208 0.88179 1.04103 1.73715 0.89361 1.24265 1.17455 1.84950 1.21276 1.22089 1.67323 1.24148 0.97241 0.83729 1.09948 1.16508 0.81011 0.86287 0.77680 1.90857 1.85768 1.11723 1.50161 1.45950 1.05452 1.10631 1.72825 1.22475 0.80304 0.96003 0.99162 0.88016 1.23208 0.96755 0.98804 1.00078 1.21162 0.90254 0.96238 0.86955 1.44388 1.00547 1.64276 1.23830 1.19073 0.88317 1.27320 1.00892 0.90332 1.24807 0.96719 1.00879 0.98010 1.69939 1.11910 1.48875 1.26344 0.86090 0.80112 0.79179 0.80211 1.21542 1.21666 1.20673 1.21827 0.86461 0.98601 0.92977 1.21469 0.90299 0.98573 1.02349 1.20329 1.02556 0.87897 1.03396 0.89961 0.89783 0.90320 0.76058 0.91393 0.91789 0.93108 0.93440 0.93694 0.96068 0.93712 0.90209 0.88946 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.39 36.01 0.37 -0.13 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 N -0.35 -4.39 12.04 33.52 0.40 -3.99 16 4 O 0.12 1.48 11.04 15.55 0.17 1.65 16 5 C -0.08 -1.11 7.29 -36.32 -0.26 -1.37 16 6 C 0.60 8.93 7.82 -12.48 -0.10 8.83 16 7 O -0.51 -8.88 14.76 5.30 0.08 -8.81 16 8 N -0.70 -9.93 5.19 -52.78 -0.27 -10.21 16 9 C 0.13 2.18 3.42 -65.78 -0.23 1.96 16 10 H 0.10 1.92 7.54 -51.93 -0.39 1.53 16 11 C -0.15 -2.61 6.60 -24.90 -0.16 -2.77 16 12 C 0.18 4.21 5.37 -3.06 -0.02 4.20 16 13 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 14 C -0.23 -6.38 10.28 -15.05 -0.15 -6.53 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.87 10.31 55.49 0.57 -26.30 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16 23 C -0.12 -1.42 6.36 -103.99 -0.66 -2.08 16 24 C -0.08 -0.81 9.85 36.01 0.35 -0.46 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.42 7.64 -51.93 -0.40 0.02 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.40 4.77 8.39 -40.82 -0.34 4.43 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 31 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 32 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.05 6.75 -51.93 -0.35 0.70 16 38 H 0.07 0.50 7.64 -51.93 -0.40 0.11 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.85 320.57 -6.54 -38.38 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.15 Total: -0.22 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.57 Total: 3.50 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.12 Total: -56.44 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.25 Total: -7.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.85 -6.54 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014862663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.985 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds