Wall clock time and date at job start Tue Mar 31 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30126 * 126.70558 * 2 1 4 4 O 1.20886 * 111.98497 * 179.97438 * 3 2 1 5 5 C 1.34642 * 111.46467 * 359.97438 * 4 3 2 6 6 C 1.47509 * 126.94048 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00032 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00029 * 359.97008 * 6 5 4 9 9 C 1.46501 * 119.99936 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.88612 * 31.12178 * 9 8 6 11 11 C 1.55160 * 111.00381 * 155.00225 * 9 8 6 12 12 C 1.54321 * 102.94230 * 153.57928 * 11 9 8 13 13 N 1.47023 * 107.27019 * 337.80886 * 12 11 9 14 14 C 1.36944 * 125.64816 * 178.96569 * 13 12 11 15 15 H 1.07997 * 119.99830 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99744 * 359.96821 * 14 13 12 17 17 N 1.31618 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99561 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46953 * 90.00537 * 18 16 14 20 20 H 1.48507 * 109.47039 * 210.00329 * 18 16 14 21 21 H 1.48498 * 109.47694 * 330.00173 * 18 16 14 22 22 C 1.47425 * 108.70557 * 358.93825 * 13 12 11 23 23 C 1.36820 * 106.11193 * 359.72816 * 5 4 3 24 24 C 1.50701 * 128.07673 * 180.25295 * 23 5 4 25 25 H 1.09001 * 109.46953 * 90.02773 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02370 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03001 * 1 2 3 28 28 H 0.96998 * 120.00309 * 0.02562 * 8 6 5 29 29 H 1.08999 * 110.71593 * 271.93873 * 11 9 8 30 30 H 1.08997 * 110.71886 * 35.03736 * 11 9 8 31 31 H 1.09001 * 109.88460 * 97.22668 * 12 11 9 32 32 H 1.08995 * 109.88163 * 218.39027 * 12 11 9 33 33 H 0.96992 * 119.99903 * 179.97438 * 17 16 14 34 34 H 1.08994 * 110.36530 * 265.29404 * 22 13 12 35 35 H 1.09000 * 110.36321 * 142.97066 * 22 13 12 36 36 H 1.09005 * 109.47508 * 270.20722 * 24 23 5 37 37 H 1.09004 * 109.47230 * 30.20643 * 24 23 5 38 38 H 1.09003 * 109.47115 * 150.20443 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4540 0.7361 0.0005 5 6 3.6121 -0.6010 0.0015 6 6 4.8871 -1.3430 0.0028 7 8 4.8829 -2.5588 0.0041 8 7 6.0566 -0.6731 0.0026 9 6 7.3228 -1.4099 0.0045 10 1 7.2205 -2.3597 -0.5205 11 6 8.4642 -0.5559 -0.6081 12 6 9.7268 -1.1307 0.0677 13 7 9.2961 -1.7876 1.3105 14 6 10.1144 -2.4409 2.1931 15 1 9.6991 -2.8924 3.0818 16 6 11.4778 -2.5228 1.9451 17 7 11.9840 -1.9722 0.8621 18 14 12.5939 -3.4145 3.1486 19 1 12.6905 -4.8462 2.7665 20 1 13.9462 -2.8014 3.1171 21 1 12.0326 -3.3047 4.5191 22 6 7.8373 -1.6261 1.4496 23 6 2.3514 -1.1325 0.0078 24 6 1.9557 -2.5866 0.0166 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 6.0600 0.2969 0.0019 29 1 8.5096 -0.6914 -1.6887 30 1 8.3348 0.4970 -0.3579 31 1 10.2014 -1.8581 -0.5909 32 1 10.4241 -0.3248 0.2968 33 1 12.9367 -2.0291 0.6891 34 1 7.6091 -0.7576 2.0674 35 1 7.3954 -2.5251 1.8792 36 1 1.8611 -2.9437 -1.0089 37 1 2.7188 -3.1676 0.5347 38 1 1.0012 -2.7003 0.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014862663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:47 Heat of formation + Delta-G solvation = 26.082827 kcal Electronic energy + Delta-G solvation = -21497.257562 eV Core-core repulsion = 18149.918434 eV Total energy + Delta-G solvation = -3347.339127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.07248 -41.00794 -38.97504 -36.57465 -35.65954 -34.04477 -33.46731 -31.08152 -29.91148 -29.37272 -28.65270 -26.57323 -24.59622 -22.85617 -22.15937 -21.84875 -21.23124 -19.34284 -18.91394 -18.80653 -17.55488 -16.95715 -16.69684 -16.15250 -15.78267 -15.72306 -14.89149 -14.56165 -14.42484 -14.19403 -14.05770 -13.99741 -13.85029 -13.79904 -13.70431 -13.16838 -12.96418 -12.77015 -12.47089 -12.17376 -12.14021 -12.03375 -11.82020 -11.59943 -11.38988 -10.97146 -10.71692 -10.61312 -10.20214 -8.92290 -7.86276 -5.22453 -0.33042 0.96996 1.45053 1.47605 1.48812 1.57414 1.83373 2.09927 2.50499 3.04242 3.32512 3.37856 3.63343 3.65060 3.84968 3.88472 4.01947 4.17654 4.22989 4.56762 4.59239 4.65482 4.69067 4.74904 4.78260 4.86688 4.89831 4.93632 5.01161 5.10909 5.31525 5.39249 5.44263 5.64062 5.74119 6.18207 6.25787 6.87279 7.01196 7.09401 7.74526 8.37503 9.23852 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039913 B = 0.003366 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.359901 B = 8315.951657 C = 8613.972948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 N -0.364 5.364 4 O 0.108 5.892 5 C -0.103 4.103 6 C 0.607 3.393 7 O -0.539 6.539 8 N -0.688 5.688 9 C 0.146 3.854 10 H 0.089 0.911 11 C -0.129 4.129 12 C 0.184 3.816 13 N -0.626 5.626 14 C -0.246 4.246 15 H 0.079 0.921 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.979 3.021 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.270 1.270 22 C 0.127 3.873 23 C -0.118 4.118 24 C -0.085 4.085 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.419 0.581 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.249 0.751 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.909 4.474 -4.164 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 N -0.068 5.068 4 O 0.038 5.962 5 C -0.168 4.168 6 C 0.392 3.608 7 O -0.416 6.416 8 N -0.339 5.339 9 C 0.040 3.960 10 H 0.107 0.893 11 C -0.168 4.168 12 C 0.059 3.941 13 N -0.353 5.353 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.195 1.195 22 C 0.000 4.000 23 C -0.123 4.123 24 C -0.141 4.141 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.257 0.743 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.902 4.880 -4.136 23.779 hybrid contribution 1.218 -0.669 0.609 1.518 sum -21.684 4.211 -3.527 22.369 Atomic orbital electron populations 1.20423 0.82423 1.05399 1.05058 1.24128 1.00899 0.87113 1.02188 1.73708 0.89532 1.25158 1.18436 1.84935 1.21572 1.21693 1.68021 1.23833 0.96806 0.84220 1.11949 1.16636 0.81516 0.85985 0.76693 1.90846 1.86330 1.13071 1.51373 1.45689 1.04244 1.11185 1.72766 1.21972 0.81630 0.95982 0.96389 0.89289 1.23024 0.93186 0.99749 1.00845 1.20949 0.92582 0.94372 0.86231 1.44670 1.02343 1.64216 1.24028 1.19429 0.89171 1.27425 1.01510 0.90305 1.25641 0.98094 1.01999 0.99846 1.70150 1.11738 1.49991 1.27843 0.85070 0.77862 0.77773 0.78558 1.21270 1.21783 1.19509 1.21943 0.84299 0.98290 0.95451 1.21871 0.89911 0.99790 1.00732 1.20412 1.03337 0.86200 1.04173 0.88306 0.87586 0.89739 0.74340 0.88934 0.89125 0.96521 0.96485 0.94209 0.95113 0.94915 0.89145 0.91054 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.24 0.74 -0.01 16 2 C 0.02 0.29 7.31 43.56 0.32 0.61 16 3 N -0.36 -8.59 12.04 -48.86 -0.59 -9.18 16 4 O 0.11 2.61 11.04 65.83 0.73 3.33 16 5 C -0.10 -2.55 7.29 24.38 0.18 -2.37 16 6 C 0.61 17.49 7.82 86.69 0.68 18.16 16 7 O -0.54 -18.64 14.76 -3.97 -0.06 -18.70 16 8 N -0.69 -18.65 5.19 -439.15 -2.28 -20.93 16 9 C 0.15 4.99 3.42 46.38 0.16 5.15 16 10 H 0.09 3.34 7.54 -2.39 -0.02 3.32 16 11 C -0.13 -4.35 6.60 31.78 0.21 -4.14 16 12 C 0.18 8.86 5.37 86.73 0.47 9.32 16 13 N -0.63 -32.52 3.39 -691.99 -2.35 -34.87 16 14 C -0.25 -14.08 10.28 84.03 0.86 -13.21 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 17 N -0.95 -56.82 10.31 21.65 0.22 -56.59 16 18 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 C 0.13 5.34 6.93 86.85 0.60 5.94 16 23 C -0.12 -2.51 6.36 -19.45 -0.12 -2.63 16 24 C -0.08 -1.42 9.85 71.24 0.70 -0.72 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.11 0.60 7.64 -2.39 -0.02 0.58 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.42 9.06 8.39 -92.71 -0.78 8.29 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 31 H 0.02 0.90 7.38 -2.39 -0.02 0.88 16 32 H 0.02 0.91 7.51 -2.39 -0.02 0.89 16 33 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.55 6.75 -2.38 -0.02 1.54 16 38 H 0.10 1.07 7.64 -2.39 -0.02 1.05 16 Total: -1.00 -70.77 320.57 3.27 -67.50 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.31 Total: 8.33 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 5.26 Total: 12.97 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.00 Total: -121.58 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.67 Total: -15.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -70.77 3.27 -67.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014862663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.586 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds