Wall clock time and date at job start Tue Mar 31 2020 02:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29936 * 125.38163 * 2 1 4 4 C 1.36069 * 108.47950 * 180.16363 * 3 2 1 5 5 C 1.47420 * 126.44717 * 179.81668 * 4 3 2 6 6 O 1.21613 * 119.99742 * 179.68849 * 5 4 3 7 7 N 1.34773 * 120.00160 * 359.69549 * 5 4 3 8 8 C 1.46502 * 120.00159 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.78045 * 36.78019 * 8 7 5 10 10 C 1.55403 * 110.85533 * 160.08543 * 8 7 5 11 11 C 1.54908 * 101.66693 * 153.69982 * 10 8 7 12 12 N 1.47430 * 104.82850 * 323.06944 * 11 10 8 13 13 C 1.36940 * 125.64523 * 204.16467 * 12 11 10 14 14 H 1.07999 * 120.00020 * 161.47947 * 13 12 11 15 15 C 1.38813 * 119.99969 * 341.47526 * 13 12 11 16 16 N 1.31621 * 119.99597 * 157.62068 * 15 13 12 17 17 Si 1.86794 * 120.00222 * 337.62232 * 15 13 12 18 18 H 1.48507 * 109.47423 * 84.53407 * 17 15 13 19 19 H 1.48497 * 109.47192 * 204.53458 * 17 15 13 20 20 H 1.48505 * 109.47132 * 324.53466 * 17 15 13 21 21 C 1.47017 * 108.70406 * 24.13362 * 12 11 10 22 22 C 1.36090 * 107.10213 * 359.56231 * 4 3 2 23 23 C 1.50703 * 126.52462 * 180.24496 * 22 4 3 24 24 O 1.34062 * 125.37915 * 179.66965 * 2 1 3 25 25 H 1.09007 * 109.47069 * 180.34935 * 1 2 3 26 26 H 1.09002 * 109.46951 * 300.34765 * 1 2 3 27 27 H 1.08996 * 109.47122 * 60.35421 * 1 2 3 28 28 H 0.97009 * 120.00023 * 359.97438 * 7 5 4 29 29 H 1.09001 * 110.89306 * 35.62216 * 10 8 7 30 30 H 1.09002 * 111.03535 * 271.83329 * 10 8 7 31 31 H 1.08999 * 110.36283 * 204.23683 * 11 10 8 32 32 H 1.08996 * 110.46142 * 81.96062 * 11 10 8 33 33 H 0.97002 * 119.99755 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.88316 * 118.35188 * 21 12 11 35 35 H 1.08997 * 109.88264 * 239.36558 * 21 12 11 36 36 H 1.09004 * 109.46966 * 89.99685 * 23 22 4 37 37 H 1.08997 * 109.47041 * 209.99193 * 23 22 4 38 38 H 1.08993 * 109.46926 * 329.99193 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0037 5 6 4.7439 1.5438 -0.0088 6 8 5.8605 1.0618 -0.0060 7 7 4.5879 2.8824 -0.0164 8 6 5.7632 3.7570 -0.0209 9 1 6.5610 3.3295 -0.6284 10 6 5.3922 5.1798 -0.5236 11 6 6.4719 6.0483 0.1691 12 7 6.6599 5.4304 1.4944 13 6 7.1336 6.0657 2.6111 14 1 6.9622 5.6395 3.5885 15 6 7.8342 7.2576 2.4869 16 7 7.9085 8.0866 3.5066 17 14 8.6715 7.6850 0.8728 18 1 7.6891 8.3211 -0.0414 19 1 9.7904 8.6269 1.1297 20 1 9.2007 6.4468 0.2466 21 6 6.2539 4.0194 1.4186 22 6 3.5660 -0.6971 0.0040 23 6 4.7802 -1.5898 0.0087 24 8 2.2832 -1.0930 0.0063 25 1 -0.3633 -1.0277 0.0063 26 1 -0.3633 0.5192 0.8869 27 1 -0.3633 0.5083 -0.8931 28 1 3.6972 3.2669 -0.0188 29 1 4.3926 5.4609 -0.1920 30 1 5.4750 5.2454 -1.6085 31 1 6.1219 7.0750 0.2755 32 1 7.4028 6.0223 -0.3972 33 1 8.3978 8.9197 3.4196 34 1 7.1049 3.3762 1.6432 35 1 5.4473 3.8272 2.1260 36 1 5.0732 -1.7991 1.0375 37 1 4.5456 -2.5249 -0.4997 38 1 5.5998 -1.0909 -0.5083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015895693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:52 Heat of formation + Delta-G solvation = -15.708223 kcal Electronic energy + Delta-G solvation = -21557.666272 eV Core-core repulsion = 18208.514949 eV Total energy + Delta-G solvation = -3349.151323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.51437 -40.94541 -39.13425 -36.08013 -35.65034 -34.07090 -34.02597 -31.43780 -30.91986 -29.64416 -27.43233 -26.10670 -24.36314 -22.87771 -22.73017 -21.57631 -21.38778 -19.31315 -18.75604 -18.13858 -17.58741 -17.21984 -16.80312 -16.26500 -15.77151 -15.42549 -15.29607 -15.14724 -14.69850 -14.39777 -14.29037 -14.06966 -13.82994 -13.57804 -13.50850 -13.19941 -13.17236 -13.09296 -12.66557 -12.44947 -12.33736 -12.14111 -11.89771 -11.69432 -11.52923 -11.23208 -10.85877 -10.28143 -9.78666 -9.11489 -8.20746 -5.49367 -0.02089 0.91587 1.29749 1.40122 1.42536 1.49332 1.95017 2.15439 2.39792 2.85245 3.01201 3.31013 3.53183 3.55717 3.73677 3.81291 4.09590 4.13345 4.30392 4.32578 4.44012 4.55302 4.66927 4.67980 4.76753 4.78178 4.83524 4.87942 4.89915 4.93883 5.09179 5.13333 5.23719 5.41227 5.62254 6.06137 6.25492 6.55169 6.70568 7.03093 7.48560 8.03555 8.99124 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.003710 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.073432 B = 7545.666541 C = 7780.104369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.199 3.801 3 N -0.486 5.486 4 C -0.103 4.103 5 C 0.600 3.400 6 O -0.559 6.559 7 N -0.691 5.691 8 C 0.146 3.854 9 H 0.098 0.902 10 C -0.116 4.116 11 C 0.101 3.899 12 N -0.625 5.625 13 C -0.243 4.243 14 H 0.053 0.947 15 C -0.035 4.035 16 N -0.955 5.955 17 Si 0.950 3.050 18 H -0.258 1.258 19 H -0.306 1.306 20 H -0.271 1.271 21 C 0.127 3.873 22 C 0.043 3.957 23 C -0.075 4.075 24 O -0.197 6.197 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.417 0.583 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 -19.492 -13.278 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.010 4.010 3 N -0.216 5.216 4 C -0.222 4.222 5 C 0.387 3.613 6 O -0.438 6.438 7 N -0.341 5.341 8 C 0.041 3.959 9 H 0.116 0.884 10 C -0.154 4.154 11 C -0.023 4.023 12 N -0.352 5.352 13 C -0.372 4.372 14 H 0.071 0.929 15 C -0.229 4.229 16 N -0.602 5.602 17 Si 0.777 3.223 18 H -0.183 1.183 19 H -0.234 1.234 20 H -0.197 1.197 21 C 0.001 3.999 22 C -0.014 4.014 23 C -0.131 4.131 24 O -0.085 6.085 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.254 0.746 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.820 -19.034 -13.144 28.024 hybrid contribution 0.746 0.169 0.162 0.782 sum -15.075 -18.865 -12.982 27.417 Atomic orbital electron populations 1.20623 0.77260 1.06815 1.06536 1.27287 0.98037 0.77422 0.98292 1.70692 1.00477 1.31225 1.19213 1.21352 0.92136 0.92862 1.15803 1.16979 0.86490 0.82163 0.75699 1.90772 1.25365 1.75605 1.52095 1.45637 1.10331 1.04851 1.73303 1.21853 0.88195 0.90600 0.95286 0.88416 1.23012 0.99382 0.91369 1.01671 1.22125 0.96858 0.97540 0.85787 1.44803 1.76246 1.06644 1.07538 1.18549 1.29180 1.04161 0.85274 0.92916 1.25670 1.00115 0.96447 1.00693 1.69972 1.45414 1.10752 1.34027 0.85896 0.78620 0.77238 0.80496 1.18345 1.23407 1.19698 1.21740 0.96954 0.85018 0.96219 1.24127 0.84807 0.94314 0.98151 1.20681 0.88764 0.98179 1.05464 1.84368 1.16024 1.38210 1.69887 0.86922 0.87160 0.86741 0.74612 0.89061 0.86858 0.92846 0.95187 0.92647 0.96242 0.95512 0.88156 0.87362 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.23 0.75 0.36 16 2 C 0.20 3.64 8.30 88.39 0.73 4.37 16 3 N -0.49 -11.90 11.06 -293.02 -3.24 -15.14 16 4 C -0.10 -2.81 6.99 40.41 0.28 -2.53 16 5 C 0.60 18.83 7.81 86.66 0.68 19.51 16 6 O -0.56 -19.95 14.53 -4.07 -0.06 -20.01 16 7 N -0.69 -20.47 5.13 -439.75 -2.26 -22.72 16 8 C 0.15 4.90 3.25 46.27 0.15 5.05 16 9 H 0.10 3.32 7.70 -2.39 -0.02 3.31 16 10 C -0.12 -3.51 6.71 32.07 0.22 -3.29 16 11 C 0.10 4.24 4.70 86.85 0.41 4.65 16 12 N -0.62 -31.52 3.21 -691.99 -2.22 -33.74 16 13 C -0.24 -14.70 10.57 84.03 0.89 -13.81 16 14 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 15 C -0.03 -2.09 5.43 84.86 0.46 -1.63 16 16 N -0.96 -61.59 13.97 21.65 0.30 -61.29 16 17 Si 0.95 47.41 24.27 68.60 1.66 49.07 16 18 H -0.26 -11.72 6.49 99.48 0.65 -11.07 16 19 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.27 -13.25 6.66 99.48 0.66 -12.58 16 21 C 0.13 5.52 6.98 86.73 0.61 6.12 16 22 C 0.04 0.98 7.44 25.19 0.19 1.17 16 23 C -0.07 -1.29 9.88 71.24 0.70 -0.59 16 24 O -0.20 -3.90 10.73 0.27 0.00 -3.89 16 25 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.42 10.92 8.25 -92.70 -0.77 10.15 16 29 H 0.09 2.53 8.01 -2.39 -0.02 2.51 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 2.34 6.64 -2.39 -0.02 2.33 16 32 H 0.03 1.28 5.57 -2.39 -0.01 1.26 16 33 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 2.07 6.48 -2.39 -0.02 2.05 16 Total: -1.00 -77.99 315.75 0.48 -77.51 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.22 Total: 10.81 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 6.06 Total: 19.38 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -7.41 Total: -132.88 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.66 Total: 49.07 kcal Total: -77.99 0.48 -77.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015895693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.806 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds