Wall clock time and date at job start Tue Mar 31 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30129 * 126.70290 * 2 1 4 4 O 1.20894 * 111.97957 * 179.71509 * 3 2 1 5 5 C 1.34636 * 111.46723 * 0.49323 * 4 3 2 6 6 C 1.47511 * 126.94370 * 179.79132 * 5 4 3 7 7 O 1.21587 * 119.99823 * 179.68737 * 6 5 4 8 8 N 1.34770 * 119.99950 * 359.68134 * 6 5 4 9 9 C 1.47421 * 125.65012 * 359.96457 * 8 6 5 10 10 C 1.54911 * 104.83561 * 204.16415 * 9 8 6 11 11 C 1.55160 * 101.58012 * 322.98898 * 10 9 8 12 12 H 1.09002 * 110.86986 * 277.07030 * 11 10 9 13 13 N 1.46490 * 110.72244 * 153.86339 * 11 10 9 14 14 C 1.36935 * 120.00121 * 160.02014 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.47022 * 125.64744 * 180.02562 * 8 6 5 23 23 C 1.36823 * 106.11344 * 359.52597 * 5 4 3 24 24 C 1.50703 * 128.07776 * 180.28104 * 23 5 4 25 25 H 1.08997 * 109.47066 * 269.97662 * 1 2 3 26 26 H 1.08996 * 109.46606 * 29.97624 * 1 2 3 27 27 H 1.08997 * 109.46517 * 149.97354 * 1 2 3 28 28 H 1.09006 * 110.36718 * 322.99647 * 9 8 6 29 29 H 1.09003 * 110.37292 * 85.31909 * 9 8 6 30 30 H 1.09002 * 111.00709 * 204.91349 * 10 9 8 31 31 H 1.09001 * 111.00486 * 81.05903 * 10 9 8 32 32 H 0.97000 * 120.00577 * 340.02614 * 13 11 10 33 33 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.88498 * 59.49121 * 22 8 6 35 35 H 1.08998 * 109.88260 * 298.32226 * 22 8 6 36 36 H 1.09000 * 109.47084 * 90.00580 * 24 23 5 37 37 H 1.08997 * 109.46902 * 210.00022 * 24 23 5 38 38 H 1.08998 * 109.46871 * 330.00121 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4541 0.7361 0.0056 5 6 3.6122 -0.6010 -0.0006 6 6 4.8871 -1.3429 -0.0010 7 8 4.8829 -2.5588 -0.0013 8 7 6.0566 -0.6731 -0.0012 9 6 6.2068 0.7934 -0.0018 10 6 7.6064 1.0485 -0.6148 11 6 8.4229 -0.1341 -0.0299 12 1 8.7723 0.0955 0.9767 13 7 9.5498 -0.4684 -0.9040 14 6 10.6136 -1.1750 -0.4098 15 1 10.6216 -1.4862 0.6243 16 6 11.6818 -1.4914 -1.2380 17 7 11.6723 -1.1117 -2.4982 18 14 13.1325 -2.4560 -0.5639 19 1 14.1480 -1.5134 -0.0292 20 1 12.6679 -3.3529 0.5245 21 1 13.7352 -3.2681 -1.6513 22 6 7.3939 -1.2840 -0.0021 23 6 2.3514 -1.1325 -0.0004 24 6 1.9559 -2.5867 -0.0001 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5142 28 1 5.4336 1.2537 -0.6171 29 1 6.1624 1.1798 1.0165 30 1 8.0104 2.0047 -0.2820 31 1 7.5713 0.9986 -1.7031 32 1 9.5427 -0.1892 -1.8330 33 1 10.9188 -0.6112 -2.8483 34 1 7.5145 -1.9109 -0.8856 35 1 7.5295 -1.8808 0.8998 36 1 1.8605 -2.9371 1.0276 37 1 1.0017 -2.7037 -0.5138 38 1 2.7192 -3.1709 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019014536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:38 Heat of formation + Delta-G solvation = 40.395574 kcal Electronic energy + Delta-G solvation = -21664.953963 eV Core-core repulsion = 18318.235483 eV Total energy + Delta-G solvation = -3346.718480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.16279 -39.84787 -37.59324 -35.63784 -34.47903 -32.86774 -31.64929 -29.63990 -29.21777 -28.51277 -27.36873 -24.53820 -23.16450 -22.12919 -21.95864 -20.32708 -19.50556 -18.00876 -17.75342 -17.33581 -16.23693 -16.07419 -15.59481 -14.63511 -14.35680 -13.99280 -13.85968 -13.72410 -13.39276 -13.36856 -13.24591 -13.16996 -12.91625 -12.62774 -12.56002 -12.08501 -11.54228 -11.32215 -11.25550 -10.76773 -10.66004 -10.37678 -10.22231 -10.13188 -10.04509 -9.62473 -9.25977 -9.04548 -8.54479 -7.19560 -6.19086 -3.21854 0.68081 1.81594 2.49402 2.97635 3.10597 3.49472 3.53879 3.67979 3.81584 4.17048 4.48892 4.60374 4.68751 4.80615 4.91046 5.10905 5.13559 5.21500 5.29209 5.33703 5.43274 5.47005 5.56326 5.62375 5.64817 5.71750 5.81239 5.91714 6.03477 6.15803 6.21375 6.31169 6.48963 6.73243 7.44381 7.72802 7.81582 8.04831 8.66665 9.09639 9.96356 10.08837 11.28736 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038715 B = 0.003541 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.060711 B = 7906.340774 C = 8369.414073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 N -0.349 5.349 4 O 0.117 5.883 5 C -0.079 4.079 6 C 0.610 3.390 7 O -0.515 6.515 8 N -0.598 5.598 9 C 0.097 3.903 10 C -0.140 4.140 11 C 0.177 3.823 12 H 0.070 0.930 13 N -0.724 5.724 14 C -0.341 4.341 15 H 0.068 0.932 16 C -0.040 4.040 17 N -0.940 5.940 18 Si 1.083 2.917 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.084 3.916 23 C -0.125 4.125 24 C -0.084 4.084 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.370 0.630 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.903 3.329 5.806 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 N -0.052 5.052 4 O 0.045 5.955 5 C -0.144 4.144 6 C 0.395 3.605 7 O -0.393 6.393 8 N -0.330 5.330 9 C -0.026 4.026 10 C -0.179 4.179 11 C 0.065 3.935 12 H 0.088 0.912 13 N -0.365 5.365 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.238 4.238 17 N -0.584 5.584 18 Si 0.913 3.087 19 H -0.222 1.222 20 H -0.220 1.220 21 H -0.213 1.213 22 C -0.041 4.041 23 C -0.130 4.130 24 C -0.141 4.141 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.204 0.796 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.633 3.198 5.631 20.673 hybrid contribution -1.634 0.097 0.160 1.645 sum -21.267 3.295 5.791 22.286 Atomic orbital electron populations 1.20182 0.85388 1.03974 1.03564 1.23492 0.99171 0.88157 1.04071 1.73711 0.89562 1.24382 1.17501 1.85038 1.21020 1.22115 1.67291 1.24068 0.96994 0.83697 1.09670 1.16173 0.80170 0.85758 0.78394 1.90841 1.85454 1.11584 1.51370 1.48474 1.05974 1.08417 1.70157 1.22501 0.98747 0.79825 1.01507 1.23079 0.93411 1.00166 1.01258 1.21165 0.86837 0.90042 0.95475 0.91231 1.42389 1.17831 1.66567 1.09693 1.20089 0.98373 1.31598 0.97122 0.91381 1.25829 1.01015 1.01714 0.95231 1.70866 1.33218 1.40398 1.13915 0.83196 0.75101 0.75767 0.74596 1.22187 1.21987 1.21315 1.23362 0.79216 0.99014 1.02494 1.21455 0.90251 0.98581 1.02680 1.20315 1.02493 0.87936 1.03354 0.89963 0.90311 0.89820 0.90196 0.90733 0.89603 0.90527 0.79553 0.93268 0.90518 0.91692 0.90239 0.90931 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.39 36.01 0.37 -0.14 16 2 C 0.01 0.10 7.31 -82.16 -0.60 -0.50 16 3 N -0.35 -4.59 12.04 33.52 0.40 -4.19 16 4 O 0.12 1.58 8.58 15.56 0.13 1.71 16 5 C -0.08 -1.11 7.06 -36.32 -0.26 -1.37 16 6 C 0.61 9.99 7.85 -12.48 -0.10 9.89 16 7 O -0.52 -9.66 15.44 5.29 0.08 -9.58 16 8 N -0.60 -9.56 3.33 -171.75 -0.57 -10.13 16 9 C 0.10 1.29 6.20 -2.53 -0.02 1.27 16 10 C -0.14 -2.06 6.69 -24.58 -0.16 -2.23 16 11 C 0.18 3.31 3.59 -66.10 -0.24 3.07 16 12 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 13 N -0.72 -17.21 5.17 -51.65 -0.27 -17.48 16 14 C -0.34 -9.23 9.98 -15.06 -0.15 -9.38 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 17 N -0.94 -28.39 13.70 55.49 0.76 -27.63 16 18 Si 1.08 25.45 29.92 -169.99 -5.09 20.36 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.08 1.55 6.62 -3.06 -0.02 1.53 16 23 C -0.12 -1.53 6.36 -103.98 -0.66 -2.19 16 24 C -0.08 -0.84 9.86 36.01 0.36 -0.49 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.44 7.65 -51.93 -0.40 0.04 16 28 H 0.08 0.97 6.28 -51.93 -0.33 0.65 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.37 9.09 6.55 -40.82 -0.27 8.82 16 33 H 0.26 7.58 6.77 -40.82 -0.28 7.30 16 34 H 0.08 1.61 8.03 -51.93 -0.42 1.20 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.09 1.09 6.73 -51.93 -0.35 0.74 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -32.15 319.38 -6.32 -38.46 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.01 Total: 5.42 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.57 Total: -1.76 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.33 Total: -59.43 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.22 Total: -7.87 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.09 Total: 20.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.15 -6.32 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019014536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.859 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds