Wall clock time and date at job start Tue Mar 31 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30129 * 126.70290 * 2 1 4 4 O 1.20894 * 111.97957 * 179.71509 * 3 2 1 5 5 C 1.34636 * 111.46723 * 0.49323 * 4 3 2 6 6 C 1.47511 * 126.94370 * 179.79132 * 5 4 3 7 7 O 1.21587 * 119.99823 * 179.68737 * 6 5 4 8 8 N 1.34770 * 119.99950 * 359.68134 * 6 5 4 9 9 C 1.47421 * 125.65012 * 359.96457 * 8 6 5 10 10 C 1.54911 * 104.83561 * 204.16415 * 9 8 6 11 11 C 1.55160 * 101.58012 * 322.98898 * 10 9 8 12 12 H 1.09002 * 110.86986 * 277.07030 * 11 10 9 13 13 N 1.46490 * 110.72244 * 153.86339 * 11 10 9 14 14 C 1.36935 * 120.00121 * 160.02014 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.47022 * 125.64744 * 180.02562 * 8 6 5 23 23 C 1.36823 * 106.11344 * 359.52597 * 5 4 3 24 24 C 1.50703 * 128.07776 * 180.28104 * 23 5 4 25 25 H 1.08997 * 109.47066 * 269.97662 * 1 2 3 26 26 H 1.08996 * 109.46606 * 29.97624 * 1 2 3 27 27 H 1.08997 * 109.46517 * 149.97354 * 1 2 3 28 28 H 1.09006 * 110.36718 * 322.99647 * 9 8 6 29 29 H 1.09003 * 110.37292 * 85.31909 * 9 8 6 30 30 H 1.09002 * 111.00709 * 204.91349 * 10 9 8 31 31 H 1.09001 * 111.00486 * 81.05903 * 10 9 8 32 32 H 0.97000 * 120.00577 * 340.02614 * 13 11 10 33 33 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.88498 * 59.49121 * 22 8 6 35 35 H 1.08998 * 109.88260 * 298.32226 * 22 8 6 36 36 H 1.09000 * 109.47084 * 90.00580 * 24 23 5 37 37 H 1.08997 * 109.46902 * 210.00022 * 24 23 5 38 38 H 1.08998 * 109.46871 * 330.00121 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4541 0.7361 0.0056 5 6 3.6122 -0.6010 -0.0006 6 6 4.8871 -1.3429 -0.0010 7 8 4.8829 -2.5588 -0.0013 8 7 6.0566 -0.6731 -0.0012 9 6 6.2068 0.7934 -0.0018 10 6 7.6064 1.0485 -0.6148 11 6 8.4229 -0.1341 -0.0299 12 1 8.7723 0.0955 0.9767 13 7 9.5498 -0.4684 -0.9040 14 6 10.6136 -1.1750 -0.4098 15 1 10.6216 -1.4862 0.6243 16 6 11.6818 -1.4914 -1.2380 17 7 11.6723 -1.1117 -2.4982 18 14 13.1325 -2.4560 -0.5639 19 1 14.1480 -1.5134 -0.0292 20 1 12.6679 -3.3529 0.5245 21 1 13.7352 -3.2681 -1.6513 22 6 7.3939 -1.2840 -0.0021 23 6 2.3514 -1.1325 -0.0004 24 6 1.9559 -2.5867 -0.0001 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5142 28 1 5.4336 1.2537 -0.6171 29 1 6.1624 1.1798 1.0165 30 1 8.0104 2.0047 -0.2820 31 1 7.5713 0.9986 -1.7031 32 1 9.5427 -0.1892 -1.8330 33 1 10.9188 -0.6112 -2.8483 34 1 7.5145 -1.9109 -0.8856 35 1 7.5295 -1.8808 0.8998 36 1 1.8605 -2.9371 1.0276 37 1 1.0017 -2.7037 -0.5138 38 1 2.7192 -3.1709 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019014536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:38 Heat of formation + Delta-G solvation = 18.981778 kcal Electronic energy + Delta-G solvation = -21665.882535 eV Core-core repulsion = 18318.235483 eV Total energy + Delta-G solvation = -3347.647052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.11556 -41.18067 -38.99880 -36.63491 -36.20105 -33.97213 -33.23890 -31.15728 -30.08389 -29.41885 -28.77160 -26.14133 -24.84059 -23.30691 -22.88398 -21.79637 -20.65594 -19.51222 -18.98741 -18.74047 -17.58965 -17.21030 -16.89873 -16.42065 -15.86630 -15.51770 -15.04144 -14.70761 -14.52947 -14.49557 -14.20336 -14.08640 -13.90544 -13.74230 -13.54498 -13.21415 -13.00055 -12.83928 -12.59998 -12.40546 -12.20294 -11.87716 -11.79819 -11.52777 -11.26056 -11.00853 -11.00729 -10.64761 -9.87309 -9.22154 -8.40619 -5.37350 -0.39682 0.92414 1.32858 1.59978 1.70040 1.74468 1.83874 1.94798 2.70572 2.99540 3.18959 3.36360 3.47893 3.52589 3.73008 3.80586 3.88140 4.11078 4.20243 4.24810 4.37404 4.54440 4.57670 4.62350 4.71539 4.74074 4.76366 4.85617 4.87144 5.01896 5.05718 5.06222 5.23623 5.28169 5.60380 6.16916 6.48544 6.62494 6.96543 7.04637 7.94042 8.04049 9.10934 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038715 B = 0.003541 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.060711 B = 7906.340774 C = 8369.414073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.018 3.982 3 N -0.364 5.364 4 O 0.109 5.891 5 C -0.101 4.101 6 C 0.609 3.391 7 O -0.548 6.548 8 N -0.600 5.600 9 C 0.103 3.897 10 C -0.128 4.128 11 C 0.171 3.829 12 H 0.075 0.925 13 N -0.737 5.737 14 C -0.335 4.335 15 H 0.071 0.929 16 C -0.100 4.100 17 N -0.974 5.974 18 Si 1.128 2.872 19 H -0.282 1.282 20 H -0.274 1.274 21 H -0.296 1.296 22 C 0.097 3.903 23 C -0.118 4.118 24 C -0.084 4.084 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.364 0.636 33 H 0.246 0.754 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 3.984 7.069 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.140 4.140 3 N -0.068 5.068 4 O 0.039 5.961 5 C -0.166 4.166 6 C 0.396 3.604 7 O -0.427 6.427 8 N -0.332 5.332 9 C -0.019 4.019 10 C -0.167 4.167 11 C 0.060 3.940 12 H 0.093 0.907 13 N -0.377 5.377 14 C -0.466 4.466 15 H 0.089 0.911 16 C -0.292 4.292 17 N -0.622 5.622 18 Si 0.953 3.047 19 H -0.208 1.208 20 H -0.199 1.199 21 H -0.222 1.222 22 C -0.029 4.029 23 C -0.123 4.123 24 C -0.141 4.141 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.881 3.889 6.933 23.281 hybrid contribution -1.124 -0.092 -0.195 1.144 sum -23.005 3.797 6.738 24.271 Atomic orbital electron populations 1.20434 0.82218 1.05470 1.05126 1.24128 1.00921 0.86948 1.02027 1.73701 0.89623 1.25179 1.18333 1.85010 1.21449 1.21515 1.68090 1.23698 0.96418 0.84365 1.12134 1.16421 0.80836 0.85584 0.77534 1.90816 1.86126 1.13016 1.52739 1.48472 1.05006 1.09535 1.70176 1.22647 0.98042 0.78072 1.03100 1.23015 0.93468 0.99400 1.00779 1.21363 0.85825 0.91586 0.95194 0.90695 1.42540 1.18678 1.66518 1.10007 1.20418 0.98818 1.30320 0.97092 0.91125 1.27164 1.03970 1.02981 0.95076 1.70968 1.33437 1.42521 1.15246 0.82615 0.72750 0.75025 0.74315 1.20845 1.19938 1.22233 1.22903 0.80940 0.98442 1.00574 1.21882 0.89756 0.99926 1.00757 1.20409 1.03324 0.86147 1.04193 0.88217 0.89602 0.87572 0.88679 0.88365 0.87250 0.91240 0.80372 0.94369 0.93795 0.92405 0.89100 0.87589 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 71.24 0.74 -0.03 16 2 C 0.02 0.36 7.31 43.56 0.32 0.68 16 3 N -0.36 -8.82 12.04 -48.85 -0.59 -9.41 16 4 O 0.11 2.77 8.58 65.87 0.56 3.34 16 5 C -0.10 -2.76 7.06 24.39 0.17 -2.59 16 6 C 0.61 20.02 7.85 86.69 0.68 20.70 16 7 O -0.55 -20.99 15.44 -3.99 -0.06 -21.06 16 8 N -0.60 -19.10 3.33 -815.57 -2.71 -21.81 16 9 C 0.10 2.56 6.20 86.86 0.54 3.10 16 10 C -0.13 -3.61 6.69 31.99 0.21 -3.40 16 11 C 0.17 6.36 3.59 46.19 0.17 6.53 16 12 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 13 N -0.74 -35.63 5.17 -317.33 -1.64 -37.27 16 14 C -0.34 -18.30 9.98 84.03 0.84 -17.47 16 15 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 16 C -0.10 -5.73 5.50 84.86 0.47 -5.27 16 17 N -0.97 -60.25 13.70 21.65 0.30 -59.95 16 18 Si 1.13 51.50 29.92 68.60 2.05 53.56 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 22 C 0.10 3.66 6.62 86.73 0.57 4.23 16 23 C -0.12 -2.69 6.36 -19.45 -0.12 -2.81 16 24 C -0.08 -1.52 9.86 71.24 0.70 -0.81 16 25 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.11 0.63 7.65 -2.39 -0.02 0.61 16 28 H 0.10 2.14 6.28 -2.38 -0.01 2.12 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 32 H 0.36 18.40 6.55 -92.71 -0.61 17.79 16 33 H 0.25 15.07 6.77 -92.71 -0.63 14.44 16 34 H 0.04 1.94 8.03 -2.39 -0.02 1.92 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.17 7.65 -2.39 -0.02 1.15 16 38 H 0.07 1.60 6.73 -2.39 -0.02 1.58 16 Total: -1.00 -71.09 319.38 3.82 -67.27 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.62 Total: 22.47 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.29 Total: 2.86 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.65 Total: -128.44 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.50 Total: -17.72 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.56 kcal Total: -71.09 3.82 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019014536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.255 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds