Wall clock time and date at job start Tue Mar 31 2020 02:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30135 * 126.70689 * 2 1 4 4 O 1.20884 * 111.98346 * 180.28523 * 3 2 1 5 5 C 1.34642 * 111.46673 * 359.74333 * 4 3 2 6 6 C 1.47511 * 126.94113 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00032 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00341 * 359.97438 * 6 5 4 9 9 C 1.46505 * 120.00443 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.84199 * 336.19420 * 9 8 6 11 11 C 1.53781 * 113.61376 * 107.49601 * 9 8 6 12 12 C 1.53785 * 87.07896 * 89.12002 * 11 9 8 13 13 H 1.09004 * 113.61371 * 270.88469 * 12 11 9 14 14 N 1.46498 * 113.69243 * 139.99264 * 12 11 9 15 15 C 1.36930 * 120.00276 * 107.46330 * 14 12 11 16 16 H 1.08001 * 120.00018 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99945 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99965 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47190 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47373 * 120.00064 * 19 17 15 22 22 H 1.48506 * 109.47453 * 240.00095 * 19 17 15 23 23 C 1.53771 * 113.61450 * 204.99665 * 9 8 6 24 24 C 1.36822 * 106.11401 * 359.97438 * 5 4 3 25 25 C 1.50703 * 128.07630 * 179.97438 * 24 5 4 26 26 H 1.09006 * 109.46879 * 270.12877 * 1 2 3 27 27 H 1.08995 * 109.47142 * 30.12790 * 1 2 3 28 28 H 1.08996 * 109.46538 * 150.13046 * 1 2 3 29 29 H 0.97002 * 119.99517 * 359.97438 * 8 6 5 30 30 H 1.09000 * 113.61245 * 203.66764 * 11 9 8 31 31 H 1.08999 * 113.61548 * 334.57220 * 11 9 8 32 32 H 0.96999 * 119.99458 * 287.46543 * 14 12 11 33 33 H 0.97000 * 119.99531 * 180.02562 * 18 17 15 34 34 H 1.09004 * 113.61988 * 25.43271 * 23 9 8 35 35 H 1.09008 * 113.61516 * 156.33142 * 23 9 8 36 36 H 1.09002 * 109.47152 * 89.99814 * 25 24 5 37 37 H 1.09001 * 109.46980 * 329.99914 * 25 24 5 38 38 H 1.09004 * 109.47113 * 209.99895 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2849 1.0433 0.0000 4 8 3.4540 0.7361 -0.0056 5 6 3.6121 -0.6010 -0.0046 6 6 4.8870 -1.3430 -0.0096 7 8 4.8829 -2.5589 -0.0075 8 7 6.0566 -0.6732 -0.0165 9 6 7.3228 -1.4101 -0.0209 10 1 7.2282 -2.4164 0.3871 11 6 8.0620 -1.3566 -1.3683 12 6 8.7458 -0.0791 -0.8530 13 1 8.1927 0.8330 -1.0772 14 7 10.1640 0.0136 -1.2083 15 6 10.5734 0.9038 -2.1648 16 1 9.8508 1.5373 -2.6576 17 6 11.9172 0.9913 -2.5018 18 7 12.7977 0.2183 -1.9022 19 14 12.4757 2.2052 -3.8071 20 1 11.3004 2.9507 -4.3251 21 1 13.4446 3.1607 -3.2125 22 1 13.1262 1.4697 -4.9213 23 6 8.5002 -0.6150 0.5673 24 6 2.3514 -1.1325 0.0032 25 6 1.9558 -2.5867 0.0069 26 1 -0.3633 0.0023 1.0277 27 1 -0.3633 0.8888 -0.5158 28 1 -0.3632 -0.8911 -0.5118 29 1 6.0599 0.2968 -0.0185 30 1 8.7496 -2.1882 -1.5224 31 1 7.4043 -1.1863 -2.2207 32 1 10.8130 -0.5556 -0.7659 33 1 13.7368 0.2797 -2.1375 34 1 8.1965 0.1540 1.2777 35 1 9.3078 -1.2438 0.9425 36 1 1.8663 -2.9363 1.0355 37 1 2.7162 -3.1714 -0.5107 38 1 0.9986 -2.7042 -0.5013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020273738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:05 Heat of formation + Delta-G solvation = 52.406490 kcal Electronic energy + Delta-G solvation = -21122.685683 eV Core-core repulsion = 17776.488035 eV Total energy + Delta-G solvation = -3346.197648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.23100 -40.06785 -38.09933 -35.74196 -34.13666 -33.08698 -32.44488 -29.97932 -29.13445 -28.44172 -25.18729 -25.00594 -23.68349 -22.17921 -21.93792 -20.46688 -19.05066 -18.31346 -18.04408 -17.13275 -16.15607 -16.03651 -15.10698 -14.79518 -14.66398 -14.08386 -13.90995 -13.89174 -13.57341 -13.31296 -13.28782 -13.08766 -12.72465 -12.62850 -12.22537 -11.90592 -11.68578 -11.38648 -10.93693 -10.82454 -10.39833 -10.37341 -10.20413 -10.16589 -9.93656 -9.71210 -9.60546 -8.99184 -8.88733 -7.00804 -5.81899 -3.11009 0.59415 1.75846 2.44163 2.85169 3.10546 3.41010 3.47107 3.49080 3.76062 4.18314 4.50797 4.56377 4.63962 4.90927 5.00288 5.07500 5.13351 5.23444 5.28780 5.36820 5.39780 5.45425 5.50673 5.63281 5.81117 5.83045 5.96445 6.05647 6.21914 6.26652 6.37687 6.56981 6.61745 7.00202 7.29688 7.66911 7.82445 7.95445 8.36458 9.48042 10.04656 10.39036 11.40442 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030330 B = 0.003206 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.956112 B = 8732.046962 C = 9306.734284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.344 5.344 4 O 0.118 5.882 5 C -0.088 4.088 6 C 0.606 3.394 7 O -0.514 6.514 8 N -0.689 5.689 9 C 0.114 3.886 10 H 0.101 0.899 11 C -0.176 4.176 12 C 0.165 3.835 13 H 0.075 0.925 14 N -0.711 5.711 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.159 4.159 24 C -0.121 4.121 25 C -0.085 4.085 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.175 -3.490 6.113 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 N -0.045 5.045 4 O 0.045 5.955 5 C -0.153 4.153 6 C 0.390 3.610 7 O -0.390 6.390 8 N -0.339 5.339 9 C 0.009 3.991 10 H 0.119 0.881 11 C -0.218 4.218 12 C 0.053 3.947 13 H 0.093 0.907 14 N -0.349 5.349 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.198 4.198 24 C -0.125 4.125 25 C -0.142 4.142 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.243 0.757 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.322 -2.899 5.972 24.248 hybrid contribution 0.558 0.271 -0.617 0.874 sum -22.764 -2.628 5.355 23.533 Atomic orbital electron populations 1.20189 0.85341 1.04040 1.03608 1.23523 0.99249 0.88130 1.04135 1.73736 0.89329 1.24226 1.17195 1.84968 1.21302 1.21980 1.67216 1.24066 0.97114 0.83864 1.10305 1.16457 0.80980 0.86205 0.77406 1.90835 1.85869 1.11776 1.50494 1.45634 1.04966 1.10715 1.72577 1.21950 0.81185 0.96243 0.99741 0.88118 1.24335 0.99173 1.02911 0.95370 1.21645 0.87275 0.94551 0.91241 0.90690 1.42397 1.01485 1.45480 1.45555 1.19342 0.91904 1.13410 1.12966 0.91007 1.24772 0.95990 0.99856 1.00224 1.69668 1.01601 1.41629 1.45044 0.86121 0.78409 0.80493 0.81176 1.20490 1.21818 1.21817 1.23878 0.96558 0.99777 0.99633 1.21467 0.90278 0.98572 1.02226 1.20328 1.02557 0.87882 1.03393 0.89937 0.90259 0.89776 0.75695 0.89265 0.92233 0.77981 0.93456 0.91506 0.88725 0.90193 0.89019 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.39 36.01 0.37 -0.10 16 2 C 0.01 0.08 7.31 -82.16 -0.60 -0.52 16 3 N -0.34 -4.27 12.04 33.52 0.40 -3.86 16 4 O 0.12 1.46 11.04 15.55 0.17 1.63 16 5 C -0.09 -1.08 7.29 -36.32 -0.26 -1.34 16 6 C 0.61 8.16 7.82 -12.48 -0.10 8.07 16 7 O -0.51 -8.01 14.71 5.29 0.08 -7.93 16 8 N -0.69 -8.79 5.26 -54.07 -0.28 -9.08 16 9 C 0.11 1.62 4.32 -67.12 -0.29 1.33 16 10 H 0.10 1.45 7.46 -51.93 -0.39 1.07 16 11 C -0.18 -2.96 7.68 -25.92 -0.20 -3.16 16 12 C 0.17 3.08 4.35 -67.12 -0.29 2.79 16 13 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 14 N -0.71 -17.26 5.40 -52.64 -0.28 -17.54 16 15 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 19 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 24 C -0.12 -1.31 6.36 -103.98 -0.66 -1.97 16 25 C -0.08 -0.73 9.86 36.01 0.36 -0.37 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.38 7.64 -51.93 -0.40 -0.01 16 29 H 0.41 4.57 8.53 -40.82 -0.35 4.22 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.39 9.93 7.92 -40.82 -0.32 9.60 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.45 8.12 -51.92 -0.42 1.03 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.94 6.73 -51.93 -0.35 0.59 16 38 H 0.07 0.45 7.64 -51.93 -0.40 0.05 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -31.57 327.98 -6.52 -38.09 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.13 Total: 8.80 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.12 Total: -5.14 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.56 Total: -57.51 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.25 Total: -6.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.57 -6.52 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020273738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.500 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds