Wall clock time and date at job start Tue Mar 31 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30132 * 126.70484 * 2 1 4 4 O 1.20886 * 111.97884 * 180.02562 * 3 2 1 5 5 C 1.34633 * 111.47224 * 0.02562 * 4 3 2 6 6 C 1.47519 * 126.94674 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00242 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99754 * 359.74796 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27861 * 8 6 5 10 10 H 1.08998 * 112.84625 * 23.79619 * 9 8 6 11 11 C 1.53781 * 113.61598 * 154.99527 * 9 8 6 12 12 C 1.53785 * 87.07861 * 139.98092 * 11 9 8 13 13 H 1.08994 * 113.61680 * 89.11696 * 12 11 9 14 14 N 1.46505 * 113.61313 * 220.01849 * 12 11 9 15 15 C 1.36932 * 119.99756 * 204.99949 * 14 12 11 16 16 H 1.07998 * 120.00394 * 0.02562 * 15 14 12 17 17 C 1.38820 * 119.99805 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99729 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99893 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47089 * 89.99925 * 19 17 15 21 21 H 1.48506 * 109.46716 * 210.00183 * 19 17 15 22 22 H 1.48498 * 109.47311 * 329.99797 * 19 17 15 23 23 C 1.53780 * 87.08273 * 334.56699 * 12 11 9 24 24 C 1.36820 * 106.11366 * 0.26157 * 5 4 3 25 25 C 1.50699 * 128.07936 * 179.74288 * 24 5 4 26 26 H 1.09004 * 109.47395 * 90.02255 * 1 2 3 27 27 H 1.09000 * 109.47193 * 210.02598 * 1 2 3 28 28 H 1.09004 * 109.47027 * 330.02442 * 1 2 3 29 29 H 0.97000 * 119.99736 * 0.27133 * 8 6 5 30 30 H 1.08993 * 113.61246 * 254.52765 * 11 9 8 31 31 H 1.09001 * 113.61353 * 25.43175 * 11 9 8 32 32 H 0.96996 * 119.99787 * 25.00601 * 14 12 11 33 33 H 0.97000 * 119.99285 * 180.02562 * 18 17 15 34 34 H 1.09001 * 113.61408 * 270.88803 * 23 12 11 35 35 H 1.09004 * 113.61428 * 139.97892 * 23 12 11 36 36 H 1.09007 * 109.47377 * 90.00034 * 25 24 5 37 37 H 1.09000 * 109.47421 * 209.99674 * 25 24 5 38 38 H 1.08995 * 109.47513 * 330.00153 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7360 -0.0005 5 6 3.6120 -0.6010 -0.0015 6 6 4.8870 -1.3431 -0.0018 7 8 4.8828 -2.5589 -0.0032 8 7 6.0565 -0.6732 -0.0062 9 6 7.3227 -1.4101 -0.0126 10 1 7.2244 -2.4168 -0.4187 11 6 8.4948 -0.6155 -0.6125 12 6 9.3665 -1.2076 0.5075 13 1 9.8279 -2.1595 0.2448 14 7 10.3180 -0.2510 1.0784 15 6 11.4646 -0.7003 1.6771 16 1 11.6677 -1.7598 1.7282 17 6 12.3660 0.2060 2.2185 18 7 12.1182 1.4972 2.1567 19 14 13.9305 -0.4068 3.0347 20 1 15.0131 -0.4999 2.0225 21 1 14.3337 0.5399 4.1054 22 1 13.6882 -1.7477 3.6251 23 6 8.0742 -1.3551 1.3279 24 6 2.3513 -1.1325 -0.0075 25 6 1.9557 -2.5866 -0.0164 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 6.0598 0.2968 -0.0052 30 1 8.7816 -0.9470 -1.6104 31 1 8.3702 0.4652 -0.5438 32 1 10.1358 0.7005 1.0322 33 1 12.7483 2.1305 2.5347 34 1 7.8347 -0.4766 1.9270 35 1 8.0215 -2.2837 1.8964 36 1 1.8577 -2.9428 1.0092 37 1 1.0029 -2.7009 -0.5332 38 1 2.7204 -3.1681 -0.5313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022254493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:09 Heat of formation + Delta-G solvation = 50.425245 kcal Electronic energy + Delta-G solvation = -21003.439067 eV Core-core repulsion = 17657.155507 eV Total energy + Delta-G solvation = -3346.283561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.22149 -39.96817 -38.07716 -35.74041 -34.18945 -33.10084 -32.52524 -29.97664 -29.14123 -28.44233 -25.18236 -25.04805 -23.67333 -22.10233 -21.64908 -20.38660 -19.37455 -18.13380 -18.03194 -17.15161 -16.37555 -16.05772 -14.96540 -14.88070 -14.55395 -14.22631 -13.96501 -13.89031 -13.32015 -13.30487 -13.13349 -13.06855 -12.89791 -12.67193 -12.25096 -11.96154 -11.38191 -11.29979 -10.96539 -10.76254 -10.55181 -10.42979 -10.19836 -10.18081 -10.00827 -9.69991 -9.65343 -8.96764 -8.87449 -7.01287 -5.81961 -3.11120 0.60806 1.76338 2.47166 2.87205 3.15730 3.41605 3.47196 3.48657 3.76567 4.19073 4.52302 4.57334 4.66319 4.90952 5.01636 5.08806 5.15528 5.23514 5.29872 5.31666 5.35931 5.43833 5.53056 5.62645 5.80656 5.84918 5.96966 6.05342 6.21712 6.26207 6.35350 6.56137 6.64232 6.98748 7.34586 7.67070 7.83378 7.96882 8.36369 9.47850 10.04005 10.38420 11.40353 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039068 B = 0.002948 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.530971 B = 9494.244003 C = 9864.949116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.344 5.344 4 O 0.117 5.883 5 C -0.088 4.088 6 C 0.604 3.396 7 O -0.516 6.516 8 N -0.696 5.696 9 C 0.116 3.884 10 H 0.114 0.886 11 C -0.159 4.159 12 C 0.170 3.830 13 H 0.081 0.919 14 N -0.710 5.710 15 C -0.245 4.245 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.176 4.176 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.407 0.593 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 -4.860 -6.283 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 N -0.046 5.046 4 O 0.045 5.955 5 C -0.154 4.154 6 C 0.387 3.613 7 O -0.392 6.392 8 N -0.345 5.345 9 C 0.012 3.988 10 H 0.132 0.868 11 C -0.198 4.198 12 C 0.057 3.943 13 H 0.099 0.901 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.219 4.219 24 C -0.127 4.127 25 C -0.142 4.142 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.242 0.758 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.318 -4.501 -6.198 23.596 hybrid contribution 0.684 -0.029 0.533 0.868 sum -21.634 -4.530 -5.664 22.818 Atomic orbital electron populations 1.20187 0.85353 1.04069 1.03585 1.23527 0.99242 0.88146 1.04128 1.73734 0.89340 1.24240 1.17244 1.84961 1.21296 1.22017 1.67248 1.24130 0.97239 0.83845 1.10162 1.16535 0.81102 0.86259 0.77426 1.90827 1.85923 1.11794 1.50671 1.46013 1.05347 1.10750 1.72420 1.22670 0.79663 0.96834 0.99678 0.86812 1.23893 0.95289 1.00510 1.00154 1.21337 0.87829 0.94191 0.90978 0.90066 1.42359 1.20750 1.04725 1.66921 1.19309 0.96577 0.92397 1.29370 0.90949 1.24778 0.99143 0.95294 1.01633 1.69660 1.37326 1.00197 1.50824 0.86175 0.83443 0.77622 0.78863 1.21642 1.21757 1.20674 1.24376 0.99146 1.02097 0.96263 1.21475 0.90307 0.98558 1.02311 1.20319 1.02521 0.87880 1.03430 0.89961 0.89766 0.90244 0.75793 0.91222 0.89724 0.78027 0.93411 0.89996 0.91975 0.90187 0.90907 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.39 36.00 0.37 -0.11 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 N -0.34 -4.31 12.04 33.52 0.40 -3.91 16 4 O 0.12 1.47 11.04 15.58 0.17 1.64 16 5 C -0.09 -1.09 7.29 -36.31 -0.26 -1.36 16 6 C 0.60 8.18 7.82 -12.48 -0.10 8.09 16 7 O -0.52 -8.07 14.72 5.29 0.08 -7.99 16 8 N -0.70 -8.89 5.35 -54.06 -0.29 -9.18 16 9 C 0.12 1.63 4.24 -67.12 -0.28 1.35 16 10 H 0.11 1.62 7.46 -51.93 -0.39 1.23 16 11 C -0.16 -2.38 7.58 -25.92 -0.20 -2.58 16 12 C 0.17 3.18 4.48 -67.11 -0.30 2.88 16 13 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 14 N -0.71 -17.18 5.40 -52.63 -0.28 -17.47 16 15 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 19 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.18 -2.96 7.68 -25.92 -0.20 -3.16 16 24 C -0.12 -1.34 6.36 -103.99 -0.66 -2.00 16 25 C -0.08 -0.74 9.86 36.01 0.35 -0.38 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.41 4.55 8.55 -40.82 -0.35 4.20 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.39 9.87 7.92 -40.82 -0.32 9.55 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.93 6.74 -51.93 -0.35 0.58 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -31.47 329.11 -6.56 -38.03 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.18 Total: 8.88 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.12 Total: -5.05 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.55 Total: -57.54 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: 0.25 Total: -6.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.47 -6.56 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022254493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.455 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds