Wall clock time and date at job start Tue Mar 31 2020 01:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35309 * 126.66467 * 2 1 4 4 C 1.42271 * 103.92296 * 180.02562 * 3 2 1 5 5 C 1.48328 * 126.94015 * 180.02562 * 4 3 2 6 6 O 1.21494 * 120.00002 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00124 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00266 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47479 * 184.66200 * 8 7 5 10 10 H 1.09003 * 109.99808 * 54.40555 * 9 8 7 11 11 C 1.54322 * 109.88159 * 293.31179 * 9 8 7 12 12 C 1.55280 * 103.00693 * 218.46756 * 11 9 8 13 13 C 1.54911 * 101.52761 * 35.36011 * 12 11 9 14 14 N 1.47019 * 109.88241 * 175.50089 * 9 8 7 15 15 C 1.36933 * 125.65189 * 298.33224 * 14 9 8 16 16 H 1.08004 * 119.99871 * 346.29954 * 15 14 9 17 17 C 1.38813 * 120.00231 * 166.29081 * 15 14 9 18 18 N 1.31625 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46887 * 90.00599 * 19 17 15 21 21 H 1.48494 * 109.47288 * 210.00611 * 19 17 15 22 22 H 1.48500 * 109.47282 * 330.00632 * 19 17 15 23 23 N 1.30987 * 106.11950 * 0.25981 * 4 3 2 24 24 O 1.20902 * 111.43954 * 359.53825 * 23 4 3 25 25 H 1.09000 * 109.46974 * 90.00123 * 1 2 3 26 26 H 1.09000 * 109.46541 * 210.00190 * 1 2 3 27 27 H 1.08996 * 109.47197 * 329.99701 * 1 2 3 28 28 H 1.08004 * 128.04122 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99926 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.46997 * 64.65685 * 8 7 5 31 31 H 1.09000 * 109.47147 * 304.66068 * 8 7 5 32 32 H 1.08999 * 110.72020 * 336.74994 * 11 9 8 33 33 H 1.09002 * 110.72347 * 100.02645 * 11 9 8 34 34 H 1.08997 * 110.95433 * 277.33395 * 12 11 9 35 35 H 1.09007 * 111.10123 * 153.44765 * 12 11 9 36 36 H 1.08995 * 110.36280 * 204.23556 * 13 12 11 37 37 H 1.09003 * 110.36701 * 82.02321 * 13 12 11 38 38 H 0.96998 * 119.99971 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5354 -0.0006 5 6 4.9076 1.2841 -0.0003 6 8 4.9008 2.4991 0.0000 7 7 6.0785 0.6168 -0.0005 8 6 7.3431 1.3563 -0.0008 9 6 8.5091 0.3727 -0.1182 10 1 8.3737 -0.2633 -0.9930 11 6 8.5930 -0.4961 1.1545 12 6 10.1225 -0.6284 1.3873 13 6 10.6273 0.7612 0.9246 14 7 9.7763 1.1102 -0.2275 15 6 10.1110 1.9771 -1.2332 16 1 9.5260 2.0031 -2.1407 17 6 11.2020 2.8227 -1.0863 18 7 11.9151 2.7908 0.0195 19 14 11.6581 4.0058 -2.4580 20 1 10.9475 5.2942 -2.2570 21 1 13.1241 4.2413 -2.4415 22 1 11.2651 3.4226 -3.7659 23 7 3.4761 -0.7657 -0.0066 24 8 2.3073 -1.0750 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 2.0302 2.1272 -0.0004 29 1 6.0839 -0.3532 -0.0012 30 1 7.4349 1.9195 0.9279 31 1 7.3616 2.0442 -0.8462 32 1 8.1185 0.0071 1.9969 33 1 8.1422 -1.4739 0.9844 34 1 10.5435 -1.4223 0.7704 35 1 10.3462 -0.7943 2.4412 36 1 11.6724 0.7031 0.6206 37 1 10.5052 1.4941 1.7222 38 1 12.6777 3.3814 0.1220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027738827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:09 Heat of formation + Delta-G solvation = 46.426737 kcal Electronic energy + Delta-G solvation = -21410.293582 eV Core-core repulsion = 18063.836633 eV Total energy + Delta-G solvation = -3346.456949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.23589 -39.45782 -37.63334 -34.44671 -34.29358 -33.45588 -32.47409 -29.72269 -28.78250 -28.10739 -25.54963 -24.54230 -23.34331 -22.60731 -20.41371 -19.93917 -19.42525 -18.00524 -17.75252 -17.02823 -16.49167 -15.84045 -15.01520 -14.78999 -14.54827 -14.12764 -13.98019 -13.83681 -13.63928 -13.37390 -13.05319 -12.76067 -12.13018 -11.89271 -11.83272 -11.63693 -11.38128 -10.95455 -10.80579 -10.57688 -10.24561 -10.22141 -10.07900 -9.88165 -9.81439 -9.69829 -9.64866 -8.80406 -8.59349 -6.86277 -5.77541 -3.14381 1.00153 1.52397 2.72939 3.11958 3.25686 3.40380 3.45855 3.46775 3.90311 4.34261 4.49326 4.72530 4.91559 5.00604 5.10080 5.28675 5.31655 5.38402 5.43893 5.50934 5.61091 5.72288 5.79983 6.00906 6.10831 6.23492 6.44595 6.49254 6.55137 6.66429 6.75775 7.01765 7.50992 7.56218 7.60247 7.78561 7.89029 8.23086 8.27279 9.16307 9.76628 10.43570 11.34125 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.003778 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.179492 B = 7408.976728 C = 8212.939851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.185 4.185 4 C -0.018 4.018 5 C 0.589 3.411 6 O -0.524 6.524 7 N -0.704 5.704 8 C 0.107 3.893 9 C 0.152 3.848 10 H 0.039 0.961 11 C -0.129 4.129 12 C -0.148 4.148 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.235 4.235 16 H 0.076 0.924 17 C -0.001 4.001 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 N -0.334 5.334 24 O 0.118 5.882 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.402 0.598 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.965 -8.472 2.069 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.207 4.207 4 C -0.177 4.177 5 C 0.371 3.629 6 O -0.399 6.399 7 N -0.355 5.355 8 C -0.017 4.017 9 C 0.043 3.957 10 H 0.057 0.943 11 C -0.167 4.167 12 C -0.187 4.187 13 C 0.047 3.953 14 N -0.312 5.312 15 C -0.363 4.363 16 H 0.094 0.906 17 C -0.199 4.199 18 N -0.562 5.562 19 Si 0.742 3.258 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.206 1.206 23 N -0.035 5.035 24 O 0.043 5.957 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.197 0.803 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.790 -8.398 2.015 20.680 hybrid contribution -0.104 1.069 -0.645 1.253 sum -18.893 -7.330 1.370 20.312 Atomic orbital electron populations 1.20356 0.83460 1.04845 1.04305 1.24489 0.96523 0.85546 1.03613 1.22466 0.89837 1.01560 1.06876 1.23703 0.97139 0.90042 1.06854 1.16939 0.81647 0.86480 0.77801 1.90813 1.86657 1.12476 1.49943 1.46053 1.05891 1.10812 1.72764 1.22400 0.80389 0.96165 1.02796 1.21135 0.86847 0.92063 0.95653 0.94304 1.22656 0.97686 0.98601 0.97714 1.23026 0.94931 1.00862 0.99831 1.21480 0.96097 0.89012 0.88751 1.44496 1.10256 1.50766 1.25715 1.19000 1.11343 1.11923 0.94049 0.90604 1.24908 0.98874 0.98695 0.97376 1.69941 1.20125 1.40515 1.25579 0.86130 0.77379 0.81262 0.81071 1.21358 1.21622 1.20561 1.74169 0.97111 1.15722 1.16529 1.84766 1.11177 1.33460 1.66254 0.89228 0.89644 0.88812 0.80254 0.76358 0.91511 0.90647 0.91819 0.92274 0.92251 0.92255 0.90712 0.95635 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.01 0.38 0.09 16 2 C -0.04 -0.34 7.47 -35.35 -0.26 -0.60 16 3 C -0.19 -2.08 10.92 -39.08 -0.43 -2.51 16 4 C -0.02 -0.26 7.19 -82.53 -0.59 -0.85 16 5 C 0.59 10.25 7.85 -12.11 -0.10 10.15 16 6 O -0.52 -10.81 16.95 5.37 0.09 -10.71 16 7 N -0.70 -11.80 5.40 -61.10 -0.33 -12.13 16 8 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 9 C 0.15 3.08 3.22 -66.96 -0.22 2.86 16 10 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.13 -2.22 6.07 -24.83 -0.15 -2.37 16 12 C -0.15 -2.75 7.10 -24.51 -0.17 -2.93 16 13 C 0.17 4.12 5.42 -2.53 -0.01 4.10 16 14 N -0.59 -14.77 3.13 -162.57 -0.51 -15.28 16 15 C -0.23 -6.49 9.73 -15.06 -0.15 -6.64 16 16 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 17 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 18 N -0.92 -26.73 10.54 55.49 0.58 -26.15 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 N -0.33 -4.46 11.84 33.29 0.39 -4.07 16 24 O 0.12 1.30 11.18 17.25 0.19 1.49 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.40 5.91 8.01 -40.82 -0.33 5.58 16 30 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 31 H 0.08 1.69 7.86 -51.93 -0.41 1.28 16 32 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.99 6.86 -51.93 -0.36 1.64 16 37 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -32.52 323.70 -6.80 -39.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.26 Total: 2.13 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.82 Total: 3.29 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.14 Total: -57.62 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.28 Total: -9.22 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.52 -6.80 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027738827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.744 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds