Wall clock time and date at job start Tue Mar 31 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29938 * 125.37694 * 2 1 4 4 C 1.36063 * 108.47323 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.45085 * 180.26283 * 4 3 2 6 6 O 1.21609 * 120.00469 * 179.69014 * 5 4 3 7 7 N 1.34779 * 119.99587 * 359.69244 * 5 4 3 8 8 C 1.46502 * 120.00086 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.47231 * 174.70434 * 8 7 5 10 10 H 1.08992 * 109.87497 * 53.58311 * 9 8 7 11 11 C 1.54319 * 109.87639 * 292.41017 * 9 8 7 12 12 C 1.55161 * 102.94019 * 218.38977 * 11 9 8 13 13 C 1.54913 * 101.57965 * 35.50613 * 12 11 9 14 14 N 1.47016 * 109.88002 * 174.60528 * 9 8 7 15 15 C 1.36941 * 125.64925 * 298.38671 * 14 9 8 16 16 H 1.07995 * 119.99752 * 345.87343 * 15 14 9 17 17 C 1.38811 * 120.00163 * 165.87172 * 15 14 9 18 18 N 1.31619 * 119.99800 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99956 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47532 * 59.99809 * 19 17 15 21 21 H 1.48504 * 109.46866 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46890 * 299.99794 * 19 17 15 23 23 C 1.36095 * 107.10620 * 0.02562 * 4 3 2 24 24 O 1.34046 * 125.37781 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47023 * 300.01276 * 1 2 3 27 27 H 1.09003 * 109.47184 * 60.00686 * 1 2 3 28 28 H 0.96998 * 120.00146 * 359.97438 * 7 5 4 29 29 H 1.09003 * 109.46777 * 294.69890 * 8 7 5 30 30 H 1.08995 * 109.47095 * 54.70009 * 8 7 5 31 31 H 1.09000 * 110.72776 * 336.75317 * 11 9 8 32 32 H 1.08997 * 110.72121 * 100.03041 * 11 9 8 33 33 H 1.08992 * 111.00482 * 277.42829 * 12 11 9 34 34 H 1.09007 * 111.00384 * 153.57766 * 12 11 9 35 35 H 1.09001 * 110.35939 * 204.15157 * 13 12 11 36 36 H 1.09001 * 110.45947 * 81.87660 * 13 12 11 37 37 H 0.97000 * 120.00038 * 180.02562 * 18 17 15 38 38 H 1.07999 * 126.52684 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5611 0.6638 0.0006 5 6 4.7439 1.5437 0.0062 6 8 5.8604 1.0617 0.0118 7 7 4.5879 2.8824 0.0052 8 6 5.7633 3.7569 0.0103 9 6 5.3157 5.2138 -0.1252 10 1 4.5774 5.4475 0.6418 11 6 4.7140 5.4497 -1.5266 12 6 5.2268 6.8681 -1.8906 13 6 6.6359 6.8640 -1.2471 14 7 6.4753 6.1075 0.0080 15 6 7.2745 6.2185 1.1145 16 1 6.9529 5.8006 2.0570 17 6 8.4980 6.8681 1.0247 18 7 8.8897 7.3778 -0.1238 19 14 9.5883 7.0188 2.5339 20 1 9.9374 5.6633 3.0299 21 1 10.8306 7.7495 2.1760 22 1 8.8641 7.7629 3.5955 23 6 3.5659 -0.6971 0.0003 24 8 2.2831 -1.0929 0.0005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 3.6974 3.2669 0.0004 29 1 6.3069 3.6295 0.9464 30 1 6.4129 3.4972 -0.8255 31 1 5.0871 4.7109 -2.2359 32 1 3.6249 5.4318 -1.4867 33 1 4.5962 7.6377 -1.4455 34 1 5.2912 6.9949 -2.9713 35 1 6.9598 7.8833 -1.0369 36 1 7.3520 6.3663 -1.9010 37 1 9.7448 7.8314 -0.1866 38 1 4.4361 -1.3368 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027843145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:31 Heat of formation + Delta-G solvation = 6.596497 kcal Electronic energy + Delta-G solvation = -21445.297976 eV Core-core repulsion = 18097.113858 eV Total energy + Delta-G solvation = -3348.184118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.58899 -39.30551 -37.57351 -35.07548 -34.19886 -32.50038 -32.40050 -29.68186 -28.77510 -27.98529 -25.25507 -24.39250 -23.03015 -21.63341 -20.48643 -20.10333 -19.52582 -18.13427 -17.10166 -16.80648 -16.31162 -15.83094 -14.95495 -14.77302 -14.59135 -14.14320 -14.06361 -13.79608 -13.49304 -13.19727 -13.05421 -12.88027 -12.07006 -11.86228 -11.74101 -11.40558 -11.27579 -10.99670 -10.93535 -10.75949 -10.23506 -10.13772 -10.05951 -9.84993 -9.77289 -9.66586 -9.18555 -8.64764 -8.54801 -6.82864 -5.74969 -3.11628 0.99566 1.88604 2.38126 3.29752 3.42164 3.42903 3.46671 3.47781 3.74464 4.49725 4.60777 4.78245 4.98847 5.01447 5.21301 5.35665 5.42012 5.44055 5.51401 5.55190 5.65248 5.84557 5.90864 6.09023 6.15821 6.29061 6.48508 6.56057 6.64358 6.72014 6.82008 7.07409 7.28112 7.53906 7.62512 7.80808 7.81759 8.27092 8.40930 9.19069 9.79547 10.47022 11.36828 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.003861 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.649757 B = 7249.853257 C = 7923.101481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.461 5.461 4 C -0.063 4.063 5 C 0.592 3.408 6 O -0.540 6.540 7 N -0.702 5.702 8 C 0.107 3.893 9 C 0.152 3.848 10 H 0.039 0.961 11 C -0.126 4.126 12 C -0.148 4.148 13 C 0.172 3.828 14 N -0.589 5.589 15 C -0.235 4.235 16 H 0.075 0.925 17 C -0.001 4.001 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.005 3.995 24 O -0.200 6.200 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.405 0.595 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.254 0.746 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 -13.046 -2.155 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.192 5.192 4 C -0.183 4.183 5 C 0.376 3.624 6 O -0.418 6.418 7 N -0.352 5.352 8 C -0.018 4.018 9 C 0.044 3.956 10 H 0.056 0.944 11 C -0.164 4.164 12 C -0.187 4.187 13 C 0.047 3.953 14 N -0.313 5.313 15 C -0.363 4.363 16 H 0.093 0.907 17 C -0.198 4.198 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.069 4.069 24 O -0.086 6.086 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.303 -12.607 -2.099 20.716 hybrid contribution 0.643 -0.527 0.763 1.128 sum -15.660 -13.134 -1.336 20.482 Atomic orbital electron populations 1.20290 0.80937 1.04815 1.05346 1.26341 0.96665 0.78405 1.00369 1.70757 1.00863 1.29940 1.17639 1.21987 0.92158 0.93170 1.10997 1.16794 0.85956 0.82302 0.77337 1.90834 1.24233 1.75432 1.51265 1.45965 1.11527 1.05131 1.72529 1.22347 0.86405 0.90280 1.02746 1.21125 0.91376 0.88137 0.94995 0.94379 1.22605 0.98890 0.98052 0.96835 1.23009 1.00487 0.95734 0.99476 1.21469 0.90004 0.97872 0.85945 1.44491 1.31431 1.41714 1.13669 1.18951 0.96915 1.32988 0.87456 0.90674 1.24906 0.96963 1.00907 0.97050 1.69929 1.21653 1.41338 1.23275 0.86219 0.79985 0.77774 0.81910 1.20956 1.21557 1.21063 1.25278 0.84656 0.95820 1.01113 1.84379 1.16818 1.37927 1.69458 0.89296 0.88297 0.88290 0.76082 0.91148 0.91383 0.91876 0.92288 0.92280 0.92345 0.90850 0.95622 0.93551 0.75316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.92 8.30 -13.08 -0.11 1.81 16 3 N -0.46 -5.97 11.06 -7.65 -0.08 -6.06 16 4 C -0.06 -0.90 6.99 -83.02 -0.58 -1.48 16 5 C 0.59 10.26 7.81 -12.52 -0.10 10.16 16 6 O -0.54 -11.00 16.88 5.27 0.09 -10.91 16 7 N -0.70 -11.86 5.37 -61.38 -0.33 -12.19 16 8 C 0.11 2.16 5.11 -4.04 -0.02 2.13 16 9 C 0.15 3.11 3.18 -66.96 -0.21 2.90 16 10 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.13 -2.20 6.25 -24.90 -0.16 -2.35 16 12 C -0.15 -2.79 7.09 -24.58 -0.17 -2.96 16 13 C 0.17 4.15 5.42 -2.53 -0.01 4.14 16 14 N -0.59 -14.86 3.13 -162.58 -0.51 -15.37 16 15 C -0.23 -6.50 9.71 -15.06 -0.15 -6.65 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 18 N -0.92 -26.84 10.55 55.49 0.59 -26.25 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.00 0.06 11.95 29.96 0.36 0.41 16 24 O -0.20 -2.08 10.73 6.53 0.07 -2.01 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.40 6.07 8.15 -40.82 -0.33 5.74 16 29 H 0.07 1.58 7.84 -51.93 -0.41 1.18 16 30 H 0.07 1.49 8.00 -51.93 -0.42 1.08 16 31 H 0.06 1.10 7.76 -51.93 -0.40 0.70 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.96 6.89 -51.93 -0.36 1.61 16 36 H 0.03 0.67 8.07 -51.93 -0.42 0.26 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.23 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -33.31 324.28 -6.45 -39.76 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.26 Total: 2.81 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.87 Total: 8.09 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.34 Total: -59.87 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.16 Total: -12.92 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.31 -6.45 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027843145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.356 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds